EY659216

Overview
NameEY659216
Unique NameEY659216
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length713
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10018 contig Csv1_Contig10018:729..1443. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: ISPH_CLOAB (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Clostridium acetobutylicum GN=ispH PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.856e-13
Identity = 44/96 (45.83%), Postives = 60/96 (62.50%), Query Frame = 1
Query:   70 RLVLSNRKAMADSQA--QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 351
            R +LS  K   +     +L  G VV G V+ L  +GAF++I G++GLLHVS+IS  RV   A VL+ GD +KV +LS D+E  ++SLS KKL   P
Sbjct:  463 RALLSKEKEKVEETVWNKLEEGQVVEGEVKRLTDFGAFVEIEGVDGLLHVSEISWGRVEKPADVLKIGDKIKVYVLSVDKENKKLSLSVKKLTENP 558          
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RS1_PSEAE (30S ribosomal protein S1 OS=Pseudomonas aeruginosa GN=rpsA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.053e-13
Identity = 39/109 (35.78%), Postives = 68/109 (62.39%), Query Frame = 1
Query:   49 EVDEEQSRLVLSNRKAM-ADSQAQ-------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 351
            ++D++++ +V+S R  + A++ A+       L  G  V G V++L  YGAF+D+GG++GLLH++ ++  R+   + ++  GD + V +L  DRER RVSL  K+L   P
Sbjct:  158 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSLGLKQLGEDP 266          

HSP 2 Score: 68.9366 bits (167), Expect = 2.963e-11
Identity = 47/142 (33.10%), Postives = 78/142 (54.93%), Query Frame = 1
Query:   49 EVDEEQSRLVLSNRKAMA----DSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATV-LQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARAD 456
            ++DEE+ R+ L  ++  +    D  +Q   G  + GT++S+  +G FI + GGI+GL+H+S IS + V + A    + GD L+ +ILS D ER R+SL  K+LE  P     N   + EK   +  T ++  A+   ++  D
Sbjct:  334 DIDEERRRISLGIKQCKSNPWEDFSSQFNKGDRISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELETVILSVDPERERISLGIKQLEDDP---FSNYASLHEKGSIVRGTVKEVDAKGAVISLGD 472          
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RS1_BUCBP (30S ribosomal protein S1 OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=rpsA PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.211e-13
Identity = 40/110 (36.36%), Postives = 70/110 (63.64%), Query Frame = 1
Query:   49 EVDEEQSRLVLSNRKAMADSQAQ---------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 351
            ++D++++ +V+S R+A+ +S+           L  G +V G V++L  YGAF+D+GG++GLLH++ ++  RV   + ++  GD +K+ IL  DRE+ RVSL  K+L   P
Sbjct:  158 KLDQKRNNVVVS-RRAVIESEYNAERNLLLETLQEGLIVSGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNIGDEVKIKILKFDREKIRVSLGLKQLSDDP 266          
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RS1_HAEIN (30S ribosomal protein S1 OS=Haemophilus influenzae GN=rpsA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.571e-12
Identity = 38/109 (34.86%), Postives = 66/109 (60.55%), Query Frame = 1
Query:   49 EVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 351
            ++D++++ +V+S R  +    +Q        L  GS V G V++L  YGAF+D+GG++GLLH++ ++  RV   + ++  GD + V +L  D++R RVSL  K+L   P
Sbjct:  158 KLDQKRNNVVVSRRAVIESENSQEREQVLENLVEGSEVKGVVKNLTEYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDP 266          
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RS1_RICFE (30S ribosomal protein S1 OS=Rickettsia felis GN=rpsA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.052e-12
Identity = 38/113 (33.63%), Postives = 69/113 (61.06%), Query Frame = 1
Query:   52 VDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 366
            +D++   +V+S R  + +S+++        +  G V+ GTV+++  YGAFID+G ++GLLH++ IS  RV   + VL+    +KVM++  D +  R+SL  K+L+  P + I+
Sbjct:  172 MDKKLDNIVVSRRAILEESRSEARDEMLSKIKEGMVLEGTVKNITDYGAFIDLGSVDGLLHLTDISWGRVNHPSEVLEFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWEAIK 284          
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RS1_PROSP (30S ribosomal protein S1 (Fragment) OS=Providencia sp. GN=rpsA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.052e-12
Identity = 40/109 (36.70%), Postives = 68/109 (62.39%), Query Frame = 1
Query:   49 EVDEEQSRLVLSNRKAM-ADSQAQ-------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 351
            ++D++++ +V+S R  + ++S A+       L  G  V G V++L  YGAF+D+GG++GLLH++ ++  RV   + ++  GD + V +L  DRER RVSL  K+L   P
Sbjct:   53 KLDQKRNNVVVSRRAVIESESSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDP 161          
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RS1_RICCN (30S ribosomal protein S1 OS=Rickettsia conorii GN=rpsA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.680e-12
Identity = 38/113 (33.63%), Postives = 68/113 (60.18%), Query Frame = 1
Query:   52 VDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 366
            +D++   +V+S R  + +S+++        +  G V+ GTV+++  YGAFID+G ++GLLH++ IS  RV   + VL     +KVM++  D +  R+SL  K+L+  P + I+
Sbjct:  172 MDKKLGNIVVSRRAILEESRSEARDEMLSKIKEGMVLEGTVKNITDYGAFIDLGSVDGLLHLTDISWGRVNHPSEVLDFNQKVKVMVIKFDEKNKRISLGIKQLDSNPWEAIK 284          
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RS1_COXBU (30S ribosomal protein S1 OS=Coxiella burnetii GN=rpsA PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.680e-12
Identity = 38/109 (34.86%), Postives = 67/109 (61.47%), Query Frame = 1
Query:   49 EVDEEQSRLVLSNRKAM-----ADSQA---QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 351
            ++D+ ++ +V+S R  M     A+ QA   +L  G  + G ++++  YGAF+D+GG++GLLH++ ++  RV   + +L  GD + V +L  DR++ RVSL  K+L   P
Sbjct:  154 KMDQRRNNVVVSRRAVMEAETSAERQARLEELQEGQEIKGVIKNITDYGAFVDLGGVDGLLHITDMAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKRVSLGMKQLADDP 262          
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RS1_SHIFL (30S ribosomal protein S1 OS=Shigella flexneri GN=rpsA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.500e-12
Identity = 38/109 (34.86%), Postives = 64/109 (58.72%), Query Frame = 1
Query:   49 EVDEEQSRLVLSNRKAMADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 351
            ++D++++ +V+S R  +    +         L  G  V G V++L  YGAF+D+GG++GLLH++ ++  RV   + ++  GD + V +L  DRER RVSL  K+L   P
Sbjct:  158 KLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDP 266          
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RS1_RHOPA (30S ribosomal protein S1 OS=Rhodopseudomonas palustris GN=rpsA PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.500e-12
Identity = 40/109 (36.70%), Postives = 64/109 (58.72%), Query Frame = 1
Query:   49 EVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 351
            ++D  +  +V+S R  + +++A+        L  G V+ G V+++  YGAF+D+GGI+GLLHV+ I+  RV     VL  G T+KV I+  + E  R+SL  K+L   P
Sbjct:  167 KMDRRRGNIVVSRRTVLEETRAEQRQELVQNLEEGQVIDGVVKNITDYGAFVDLGGIDGLLHVTDIAWRRVNHPTEVLTIGQTVKVKIIKINHETHRISLGMKQLLDDP 275          
The following BLAST results are available for this feature:
BLAST of EY659216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
ISPH_CLOAB1.856e-1345.834-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
RS1_PSEAE7.053e-1335.7830S ribosomal protein S1 OS=Pseudomonas aeruginosa... [more]
RS1_BUCBP9.211e-1336.3630S ribosomal protein S1 OS=Buchnera aphidicola su... [more]
RS1_HAEIN1.571e-1234.8630S ribosomal protein S1 OS=Haemophilus influenzae... [more]
RS1_RICFE2.052e-1233.6330S ribosomal protein S1 OS=Rickettsia felis GN=rp... [more]
RS1_PROSP2.052e-1236.7030S ribosomal protein S1 (Fragment) OS=Providencia... [more]
RS1_RICCN2.680e-1233.6330S ribosomal protein S1 OS=Rickettsia conorii GN=... [more]
RS1_COXBU2.680e-1234.8630S ribosomal protein S1 OS=Coxiella burnetii GN=r... [more]
RS1_SHIFL3.500e-1234.8630S ribosomal protein S1 OS=Shigella flexneri GN=r... [more]
RS1_RHOPA3.500e-1236.7030S ribosomal protein S1 OS=Rhodopseudomonas palus... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-004-F09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659216 ID=EY659216; Name=EY659216; organism=Citrus sinensis; type=EST; length=713bp
AATCAACTGCAGAAGAGCTTCTCGGTAAAGACTTCCTCTAAGTTTGTGGA
GGTTGATGAGGAACAGTCTAGGCTTGTCCTAAGTAACCGCAAGGCCATGG
CTGACAGCCAGGCACAGCTAGGAATTGGATCAGTGGTCATTGGTACTGTA
CAGAGCCTGAAACCATATGGTGCCTTCATTGACATTGGTGGAATCAATGG
TCTTCTTCATGTCAGTCAGATCAGTCACGATCGTGTGGCTGATATTGCTA
CAGTGCTTCAACCTGGTGATACTCTCAAGGTCATGATACTGAGCCATGAC
CGAGAGAGAGGCCGTGTCAGTCTTTCAACAAAGAAGTTAGAACCTACCCC
TGGAGACATGATTCGCAATCCAAAACTTGTTTTTGAGAAGGCTGAGGAGA
TGGCACAAACATTCAGGCAGAGAATTGCTCAAGCAGAAGCCATGGCTCGT
GCAGACATGCTTAGATTCCAGCCTGAGAGTGGCTTAACTCTTAACTCGGA
TGGGATCTTGGGTCCACTTTCACCTGACTTGCCGGCGGATGGATTAGATT
TGACTGACATTTCCCCAGCTGATGATTGAACTTAAATAGCAGTTGTATTG
TATCTTTTGCAACCCAAGACATATTATTAATTNTGTAAAATTTACTGCGA
TTGAAACTTCCAGCCAAATATGCAACTTCAAATTTTTTCCTCTTGGTTNA
AAAAAAAAAANNA
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