EY659216
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: ISPH_CLOAB (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Clostridium acetobutylicum GN=ispH PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.856e-13 Identity = 44/96 (45.83%), Postives = 60/96 (62.50%), Query Frame = 1 Query: 70 RLVLSNRKAMADSQA--QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 351 R +LS K + +L G VV G V+ L +GAF++I G++GLLHVS+IS RV A VL+ GD +KV +LS D+E ++SLS KKL P Sbjct: 463 RALLSKEKEKVEETVWNKLEEGQVVEGEVKRLTDFGAFVEIEGVDGLLHVSEISWGRVEKPADVLKIGDKIKVYVLSVDKENKKLSLSVKKLTENP 558
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RS1_PSEAE (30S ribosomal protein S1 OS=Pseudomonas aeruginosa GN=rpsA PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.053e-13 Identity = 39/109 (35.78%), Postives = 68/109 (62.39%), Query Frame = 1 Query: 49 EVDEEQSRLVLSNRKAM-ADSQAQ-------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 351 ++D++++ +V+S R + A++ A+ L G V G V++L YGAF+D+GG++GLLH++ ++ R+ + ++ GD + V +L DRER RVSL K+L P Sbjct: 158 KLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSLGLKQLGEDP 266 HSP 2 Score: 68.9366 bits (167), Expect = 2.963e-11 Identity = 47/142 (33.10%), Postives = 78/142 (54.93%), Query Frame = 1 Query: 49 EVDEEQSRLVLSNRKAMA----DSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATV-LQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARAD 456 ++DEE+ R+ L ++ + D +Q G + GT++S+ +G FI + GGI+GL+H+S IS + V + A + GD L+ +ILS D ER R+SL K+LE P N + EK + T ++ A+ ++ D Sbjct: 334 DIDEERRRISLGIKQCKSNPWEDFSSQFNKGDRISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELETVILSVDPERERISLGIKQLEDDP---FSNYASLHEKGSIVRGTVKEVDAKGAVISLGD 472
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RS1_BUCBP (30S ribosomal protein S1 OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=rpsA PE=3 SV=2) HSP 1 Score: 73.9442 bits (180), Expect = 9.211e-13 Identity = 40/110 (36.36%), Postives = 70/110 (63.64%), Query Frame = 1 Query: 49 EVDEEQSRLVLSNRKAMADSQAQ---------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 351 ++D++++ +V+S R+A+ +S+ L G +V G V++L YGAF+D+GG++GLLH++ ++ RV + ++ GD +K+ IL DRE+ RVSL K+L P Sbjct: 158 KLDQKRNNVVVS-RRAVIESEYNAERNLLLETLQEGLIVSGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNIGDEVKIKILKFDREKIRVSLGLKQLSDDP 266
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RS1_HAEIN (30S ribosomal protein S1 OS=Haemophilus influenzae GN=rpsA PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.571e-12 Identity = 38/109 (34.86%), Postives = 66/109 (60.55%), Query Frame = 1 Query: 49 EVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 351 ++D++++ +V+S R + +Q L GS V G V++L YGAF+D+GG++GLLH++ ++ RV + ++ GD + V +L D++R RVSL K+L P Sbjct: 158 KLDQKRNNVVVSRRAVIESENSQEREQVLENLVEGSEVKGVVKNLTEYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDP 266
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RS1_RICFE (30S ribosomal protein S1 OS=Rickettsia felis GN=rpsA PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.052e-12 Identity = 38/113 (33.63%), Postives = 69/113 (61.06%), Query Frame = 1 Query: 52 VDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 366 +D++ +V+S R + +S+++ + G V+ GTV+++ YGAFID+G ++GLLH++ IS RV + VL+ +KVM++ D + R+SL K+L+ P + I+ Sbjct: 172 MDKKLDNIVVSRRAILEESRSEARDEMLSKIKEGMVLEGTVKNITDYGAFIDLGSVDGLLHLTDISWGRVNHPSEVLEFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWEAIK 284
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RS1_PROSP (30S ribosomal protein S1 (Fragment) OS=Providencia sp. GN=rpsA PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.052e-12 Identity = 40/109 (36.70%), Postives = 68/109 (62.39%), Query Frame = 1 Query: 49 EVDEEQSRLVLSNRKAM-ADSQAQ-------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 351 ++D++++ +V+S R + ++S A+ L G V G V++L YGAF+D+GG++GLLH++ ++ RV + ++ GD + V +L DRER RVSL K+L P Sbjct: 53 KLDQKRNNVVVSRRAVIESESSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDP 161
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RS1_RICCN (30S ribosomal protein S1 OS=Rickettsia conorii GN=rpsA PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.680e-12 Identity = 38/113 (33.63%), Postives = 68/113 (60.18%), Query Frame = 1 Query: 52 VDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 366 +D++ +V+S R + +S+++ + G V+ GTV+++ YGAFID+G ++GLLH++ IS RV + VL +KVM++ D + R+SL K+L+ P + I+ Sbjct: 172 MDKKLGNIVVSRRAILEESRSEARDEMLSKIKEGMVLEGTVKNITDYGAFIDLGSVDGLLHLTDISWGRVNHPSEVLDFNQKVKVMVIKFDEKNKRISLGIKQLDSNPWEAIK 284
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RS1_COXBU (30S ribosomal protein S1 OS=Coxiella burnetii GN=rpsA PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.680e-12 Identity = 38/109 (34.86%), Postives = 67/109 (61.47%), Query Frame = 1 Query: 49 EVDEEQSRLVLSNRKAM-----ADSQA---QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 351 ++D+ ++ +V+S R M A+ QA +L G + G ++++ YGAF+D+GG++GLLH++ ++ RV + +L GD + V +L DR++ RVSL K+L P Sbjct: 154 KMDQRRNNVVVSRRAVMEAETSAERQARLEELQEGQEIKGVIKNITDYGAFVDLGGVDGLLHITDMAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKRVSLGMKQLADDP 262
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RS1_SHIFL (30S ribosomal protein S1 OS=Shigella flexneri GN=rpsA PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.500e-12 Identity = 38/109 (34.86%), Postives = 64/109 (58.72%), Query Frame = 1 Query: 49 EVDEEQSRLVLSNRKAMADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 351 ++D++++ +V+S R + + L G V G V++L YGAF+D+GG++GLLH++ ++ RV + ++ GD + V +L DRER RVSL K+L P Sbjct: 158 KLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDP 266
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RS1_RHOPA (30S ribosomal protein S1 OS=Rhodopseudomonas palustris GN=rpsA PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.500e-12 Identity = 40/109 (36.70%), Postives = 64/109 (58.72%), Query Frame = 1 Query: 49 EVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 351 ++D + +V+S R + +++A+ L G V+ G V+++ YGAF+D+GGI+GLLHV+ I+ RV VL G T+KV I+ + E R+SL K+L P Sbjct: 167 KMDRRRGNIVVSRRTVLEETRAEQRQELVQNLEEGQVIDGVVKNITDYGAFVDLGGIDGLLHVTDIAWRRVNHPTEVLTIGQTVKVKIIKINHETHRISLGMKQLLDDP 275 The following BLAST results are available for this feature:
BLAST of EY659216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 41
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Sequences
The
following sequences are available for this feature:
EST sequence >EY659216 ID=EY659216; Name=EY659216; organism=Citrus sinensis; type=EST; length=713bpback to top |