EY659216

Overview
NameEY659216
Unique NameEY659216
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length713
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10018 contig Csv1_Contig10018:729..1443. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RS1_MYCTU (30S ribosomal protein S1 OS=Mycobacterium tuberculosis GN=rpsA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.500e-12
Identity = 39/109 (35.78%), Postives = 66/109 (60.55%), Query Frame = 1
Query:   49 EVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 351
            E+D+ ++ +VLS R  +  +Q++        L  G++  G V S+  +GAF+D+GG++GL+HVS++S   +   + V+Q GD + V +L  D +R RVSLS K  +  P
Sbjct:  175 ELDKNRNNVVLSRRAWLEQTQSEVRSEFLNNLQKGTIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDP 283          
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RS1_ECOLI (30S ribosomal protein S1 OS=Escherichia coli (strain K12) GN=rpsA PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.500e-12
Identity = 38/109 (34.86%), Postives = 64/109 (58.72%), Query Frame = 1
Query:   49 EVDEEQSRLVLSNRKAMADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 351
            ++D++++ +V+S R  +    +         L  G  V G V++L  YGAF+D+GG++GLLH++ ++  RV   + ++  GD + V +L  DRER RVSL  K+L   P
Sbjct:  158 KLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDP 266          
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RS1_ECOL6 (30S ribosomal protein S1 OS=Escherichia coli O6 GN=rpsA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.500e-12
Identity = 38/109 (34.86%), Postives = 64/109 (58.72%), Query Frame = 1
Query:   49 EVDEEQSRLVLSNRKAMADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 351
            ++D++++ +V+S R  +    +         L  G  V G V++L  YGAF+D+GG++GLLH++ ++  RV   + ++  GD + V +L  DRER RVSL  K+L   P
Sbjct:  158 KLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDP 266          
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RS1_ECO57 (30S ribosomal protein S1 OS=Escherichia coli O157:H7 GN=rpsA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.500e-12
Identity = 38/109 (34.86%), Postives = 64/109 (58.72%), Query Frame = 1
Query:   49 EVDEEQSRLVLSNRKAMADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 351
            ++D++++ +V+S R  +    +         L  G  V G V++L  YGAF+D+GG++GLLH++ ++  RV   + ++  GD + V +L  DRER RVSL  K+L   P
Sbjct:  158 KLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDP 266          
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RS1_BUCAP (30S ribosomal protein S1 OS=Buchnera aphidicola subsp. Schizaphis graminum GN=rpsA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.500e-12
Identity = 39/115 (33.91%), Postives = 66/115 (57.39%), Query Frame = 1
Query:   49 EVDEEQSRLVLSNRKAMADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRN 369
            ++D++++ +V+S R  +    +         L  G  + G V++L  YGAF+D+GG++GLLH++ ++  RV   + ++  GD + V IL  D+ER RVSL  K+L   P   I N
Sbjct:  158 KLDQKRNNVVVSRRAVIESENSAERDQLLESLQEGIEIKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKILKFDKERTRVSLGLKQLGEDPWIAISN 272          
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RS1_BUCAI (30S ribosomal protein S1 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=rpsA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.500e-12
Identity = 38/109 (34.86%), Postives = 64/109 (58.72%), Query Frame = 1
Query:   49 EVDEEQSRLVLSNRKAMADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 351
            ++D++++ +V+S R  +    +         L  G  V G V++L  YGAF+D+GG++GLLH++ ++  RV   + ++  GD + + IL  DRER RVSL  K+L   P
Sbjct:  158 KLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMHVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEINIKILKFDRERTRVSLGLKQLGEDP 266          
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RS1_RICTY (30S ribosomal protein S1 OS=Rickettsia typhi GN=rpsA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.571e-12
Identity = 37/113 (32.74%), Postives = 68/113 (60.18%), Query Frame = 1
Query:   52 VDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 366
            +D++   +V+S R  + +S+++        +  G ++ G V+++  YGAFID+G ++GLLH++ IS  RV   + VL+    +KVM++  D +  R+SL  K+L+  P D I+
Sbjct:  172 MDKKLGNIVVSRRVILEESRSEARDEMLSKIKEGMILEGVVKNITDYGAFIDLGSVDGLLHLTDISWGRVNHPSEVLEFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWDAIK 284          
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RS1_RICPR (30S ribosomal protein S1 OS=Rickettsia prowazekii GN=rpsA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.571e-12
Identity = 38/113 (33.63%), Postives = 68/113 (60.18%), Query Frame = 1
Query:   52 VDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 366
            +D++   +V+S R  + +S+++        +  G V+ G V+++  YGAFID+G ++GLLH++ IS  RV   + VL+    +KVM++  D +  R+SL  K+L+  P D I+
Sbjct:  172 MDKKLGNIVVSRRVILEESRSEARDEMLSKIKEGIVLEGVVKNITDYGAFIDLGSVDGLLHLTDISWGRVNHPSEVLEFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWDAIK 284          
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RS1_MYCLE (30S ribosomal protein S1 OS=Mycobacterium leprae GN=rpsA PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.970e-12
Identity = 39/109 (35.78%), Postives = 66/109 (60.55%), Query Frame = 1
Query:   49 EVDEEQSRLVLSNRKAMADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 351
            E+D+ ++ +VLS R  +  +Q+        QL  G++  G V S+  +GAF+D+GG++GL+HVS++S   +   + V+Q G+ + V +L  D +R RVSLS K  +  P
Sbjct:  175 ELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQVGNEVTVEVLDVDMDRERVSLSLKATQEDP 283          
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RS1_RICBR (30S ribosomal protein S1 OS=Rickettsia bellii (strain RML369-C) GN=rpsA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.798e-12
Identity = 37/113 (32.74%), Postives = 69/113 (61.06%), Query Frame = 1
Query:   52 VDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 366
            +D++   +V+S R  + +S+++        +  G ++ GTV+++  YGAFID+G ++GLLH++ IS  RV   + VL+    +KVM++  + E  R+SL  K+L+  P + I+
Sbjct:  175 MDKKLGNIVVSRRAILEESRSEARDEMLSKIKEGMILEGTVKNITDYGAFIDLGSVDGLLHLTDISWARVNHPSEVLEFNQKVKVMVIKFNEETKRISLGMKQLDYNPWEKIK 287          
The following BLAST results are available for this feature:
BLAST of EY659216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RS1_MYCTU3.500e-1235.7830S ribosomal protein S1 OS=Mycobacterium tubercul... [more]
RS1_ECOLI3.500e-1234.8630S ribosomal protein S1 OS=Escherichia coli (stra... [more]
RS1_ECOL63.500e-1234.8630S ribosomal protein S1 OS=Escherichia coli O6 GN... [more]
RS1_ECO573.500e-1234.8630S ribosomal protein S1 OS=Escherichia coli O157:... [more]
RS1_BUCAP3.500e-1233.9130S ribosomal protein S1 OS=Buchnera aphidicola su... [more]
RS1_BUCAI3.500e-1234.8630S ribosomal protein S1 OS=Buchnera aphidicola su... [more]
RS1_RICTY4.571e-1232.7430S ribosomal protein S1 OS=Rickettsia typhi GN=rp... [more]
RS1_RICPR4.571e-1233.6330S ribosomal protein S1 OS=Rickettsia prowazekii ... [more]
RS1_MYCLE5.970e-1235.7830S ribosomal protein S1 OS=Mycobacterium leprae G... [more]
RS1_RICBR7.798e-1232.7430S ribosomal protein S1 OS=Rickettsia bellii (str... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-004-F09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659216 ID=EY659216; Name=EY659216; organism=Citrus sinensis; type=EST; length=713bp
AATCAACTGCAGAAGAGCTTCTCGGTAAAGACTTCCTCTAAGTTTGTGGA
GGTTGATGAGGAACAGTCTAGGCTTGTCCTAAGTAACCGCAAGGCCATGG
CTGACAGCCAGGCACAGCTAGGAATTGGATCAGTGGTCATTGGTACTGTA
CAGAGCCTGAAACCATATGGTGCCTTCATTGACATTGGTGGAATCAATGG
TCTTCTTCATGTCAGTCAGATCAGTCACGATCGTGTGGCTGATATTGCTA
CAGTGCTTCAACCTGGTGATACTCTCAAGGTCATGATACTGAGCCATGAC
CGAGAGAGAGGCCGTGTCAGTCTTTCAACAAAGAAGTTAGAACCTACCCC
TGGAGACATGATTCGCAATCCAAAACTTGTTTTTGAGAAGGCTGAGGAGA
TGGCACAAACATTCAGGCAGAGAATTGCTCAAGCAGAAGCCATGGCTCGT
GCAGACATGCTTAGATTCCAGCCTGAGAGTGGCTTAACTCTTAACTCGGA
TGGGATCTTGGGTCCACTTTCACCTGACTTGCCGGCGGATGGATTAGATT
TGACTGACATTTCCCCAGCTGATGATTGAACTTAAATAGCAGTTGTATTG
TATCTTTTGCAACCCAAGACATATTATTAATTNTGTAAAATTTACTGCGA
TTGAAACTTCCAGCCAAATATGCAACTTCAAATTTTTTCCTCTTGGTTNA
AAAAAAAAAANNA
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