EY659216

Overview
NameEY659216
Unique NameEY659216
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length713
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10018 contig Csv1_Contig10018:729..1443. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RS1_NEIMB (30S ribosomal protein S1 OS=Neisseria meningitidis serogroup B GN=rpsA PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.798e-12
Identity = 37/109 (33.94%), Postives = 67/109 (61.47%), Query Frame = 1 
Query:   49 EVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 351
            ++D++++ +V+S R  +  +  +        L  GSV+ G V+++  YGAF+D+GGI+GLLH++ ++  RV   + VL+ G  ++  +L  D+E+ RVSL  K+L   P
Sbjct:  159 KLDKKRNNVVVSRRAVLEATLGEERKALLENLQEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQEKQRVSLGMKQLGEDP 267
The following BLAST results are available for this feature:
BLAST of EY659216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RS1_NEIMB7.798e-1233.9430S ribosomal protein S1 OS=Neisseria meningitidis... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-004-F09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659216 ID=EY659216; Name=EY659216; organism=Citrus sinensis; type=EST; length=713bp
AATCAACTGCAGAAGAGCTTCTCGGTAAAGACTTCCTCTAAGTTTGTGGA
GGTTGATGAGGAACAGTCTAGGCTTGTCCTAAGTAACCGCAAGGCCATGG
CTGACAGCCAGGCACAGCTAGGAATTGGATCAGTGGTCATTGGTACTGTA
CAGAGCCTGAAACCATATGGTGCCTTCATTGACATTGGTGGAATCAATGG
TCTTCTTCATGTCAGTCAGATCAGTCACGATCGTGTGGCTGATATTGCTA
CAGTGCTTCAACCTGGTGATACTCTCAAGGTCATGATACTGAGCCATGAC
CGAGAGAGAGGCCGTGTCAGTCTTTCAACAAAGAAGTTAGAACCTACCCC
TGGAGACATGATTCGCAATCCAAAACTTGTTTTTGAGAAGGCTGAGGAGA
TGGCACAAACATTCAGGCAGAGAATTGCTCAAGCAGAAGCCATGGCTCGT
GCAGACATGCTTAGATTCCAGCCTGAGAGTGGCTTAACTCTTAACTCGGA
TGGGATCTTGGGTCCACTTTCACCTGACTTGCCGGCGGATGGATTAGATT
TGACTGACATTTCCCCAGCTGATGATTGAACTTAAATAGCAGTTGTATTG
TATCTTTTGCAACCCAAGACATATTATTAATTNTGTAAAATTTACTGCGA
TTGAAACTTCCAGCCAAATATGCAACTTCAAATTTTTTCCTCTTGGTTNA
AAAAAAAAAANNA
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