EY659202

Overview
NameEY659202
Unique NameEY659202
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length942
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659202_ssr388 microsatellite EY659202_ssr388:388..399. BLAST: Citrus ESTs to TAIR9
Csv1_Contig6352 contig Csv1_Contig6352:593..1540. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
[Close]
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_EUCGG (Photosystem I assembly protein ycf3 OS=Eucalyptus globulus subsp. globulus GN=ycf3 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.286e-16
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 3 
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRSRINGNFIDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42
[Close]
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_CHLSC (Photosystem I assembly protein ycf3 OS=Chloranthus spicatus GN=ycf3 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.286e-16
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 3 
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRSRINGNFIDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42
[Close]
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_TOBAC (Photosystem I assembly protein ycf3 OS=Nicotiana tabacum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 8.210e-16
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 3 
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRSRINGNFIDKTFSIVANILLR+IPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRVIPTTSGEKEAFTYYRDG 42
[Close]
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_NICTO (Photosystem I assembly protein ycf3 OS=Nicotiana tomentosiformis GN=ycf3 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 8.210e-16
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 3 
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRSRINGNFIDKTFSIVANILLR+IPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRVIPTTSGEKEAFTYYRDG 42
[Close]
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_NICSY (Photosystem I assembly protein ycf3 OS=Nicotiana sylvestris GN=ycf3 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 8.210e-16
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 3 
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRSRINGNFIDKTFSIVANILLR+IPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRVIPTTSGEKEAFTYYRDG 42
[Close]
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_DAUCA (Photosystem I assembly protein ycf3 OS=Daucus carota GN=ycf3 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 8.210e-16
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 3 
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRSRINGNFIDKTFSI+ANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSIIANILLRIIPTTSGEKEAFTYYRDG 42
[Close]
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_PELHO (Photosystem I assembly protein ycf3 OS=Pelargonium hortorum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.400e-15
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 3 
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRSRINGNFIDKTFSIVANILLRIIPTT GE+EAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEREAFTYYRDG 42
[Close]
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_PIPCE (Photosystem I assembly protein ycf3 OS=Piper cenocladum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.829e-15
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 3 
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 347
            MPRS+INGNFIDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSQINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42
[Close]
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_ORYSJ (Photosystem I assembly protein ycf3 OS=Oryza sativa subsp. japonica GN=ycf3 PE=2 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 1.829e-15
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 3 
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGAI 353
            MPRSRINGNFIDKTFSIVANILLRIIPTT GEK AFTYYRDG +
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKRAFTYYRDGML 44
[Close]
BLAST of EY659202 vs. ExPASy Swiss-Prot
Match: YCF3_ORYSI (Photosystem I assembly protein ycf3 OS=Oryza sativa subsp. indica GN=ycf3 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.829e-15
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 3 
Query:  222 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGAI 353
            MPRSRINGNFIDKTFSIVANILLRIIPTT GEK AFTYYRDG +
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKRAFTYYRDGML 44
The following BLAST results are available for this feature:
BLAST of EY659202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
YCF3_EUCGG6.286e-1697.62Photosystem I assembly protein ycf3 OS=Eucalyptus ... [more]
YCF3_CHLSC6.286e-1697.62Photosystem I assembly protein ycf3 OS=Chloranthus... [more]
YCF3_TOBAC8.210e-1695.24Photosystem I assembly protein ycf3 OS=Nicotiana t... [more]
YCF3_NICTO8.210e-1695.24Photosystem I assembly protein ycf3 OS=Nicotiana t... [more]
YCF3_NICSY8.210e-1695.24Photosystem I assembly protein ycf3 OS=Nicotiana s... [more]
YCF3_DAUCA8.210e-1695.24Photosystem I assembly protein ycf3 OS=Daucus caro... [more]
YCF3_PELHO1.400e-1595.24Photosystem I assembly protein ycf3 OS=Pelargonium... [more]
YCF3_PIPCE1.829e-1595.24Photosystem I assembly protein ycf3 OS=Piper cenoc... [more]
YCF3_ORYSJ1.829e-1590.91Photosystem I assembly protein ycf3 OS=Oryza sativ... [more]
YCF3_ORYSI1.829e-1590.91Photosystem I assembly protein ycf3 OS=Oryza sativ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-004-E07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659202 ID=EY659202; Name=EY659202; organism=Citrus sinensis; type=EST; length=942bp
CCGGNATTAAAGCCTCGACCCACGCGTCCGTTTTTTTTTTTCTGATATTT
CTACCTGATTTAATCAATGAGTTGGAACGAATCAACGGATCGGTCTATTT
TTTTTTTTATTTTTTTTAACACGTCTGCTTTTATGTTATTTTGTACTGTA
CAATTCCTTTGTTTGTGGGATCATTTTCTCACAAGAGGTAATGAAACGAA
TTATAGAATGGATTTTTACCTATGCCTAGATCGCGGATAAACGGAAATTT
TATTGATAAGACCTTTTCGATTGTAGCCAATATATTATTACGAATAATTC
CGACAACTGTAGGAGAAAAAGAGGCATTTACCTATTACAGAGATGGTGCG
ATTTGATTAGTTTTTTATTTACCCCTTTCGGTCTTAGAAGAAAGAAAGAC
AATTCGGGATAGAAAAAAAAAAAAAAAAGATTATTGAAAAAATCTACGCT
TGTTGAAGGTGAAGTTTATAGATAAAACCATTCCTTCTGTCGTGTATCCC
CGATTAATGCAGCCTCAGATGCTTCAATTGTCGATTCTAGTATTGAGCGA
AAGGTTACACCTATGGGTTCTGTATTGCAAGTCAACCCTACTACACCAGT
ACCAATAGGCGGCATAGGGGAAGAGGCGCTACGTCTAGGAATCAGCAACA
CGAAAACTTTGTTATAAACTGCCCCCTTCCTTAGCGGGATCGGGACTAAG
AAGAATGGTTGGGATAACAAACATCCATCTCGTTCGTACTGTGGATACCC
GTATAACCATCGAAGACTGTTGAAGTGATAATTNCCTGTAAATTAAAGGG
GCGTGAGAACAAGAAATTGTTGAGTTTNCGGTTTTATCTAGTACCAACAC
GCGTGATATAAAGAAAAAGCTTTGCAAAAGGTTNGCTAGAGATTNCNNTG
TAAACATTACCCCCCTTAGTTCATATGAGAATATTCAATCTT
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