EY659180

Overview
NameEY659180
Unique NameEY659180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length909
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659180_ssr277 microsatellite EY659180_ssr277:277..288. BLAST: Citrus ESTs to Prunus persica proteins V1
EY659180_ssr750 microsatellite EY659180_ssr750:750..764. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL3L_ARATH (RING-H2 finger protein ATL3L OS=Arabidopsis thaliana GN=ATL3L PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.873e-18
Identity = 53/123 (43.09%), Postives = 69/123 (56.10%), Query Frame = 2
Query:  341 LDPAILRKIPVVAFNQQDFKDGLE-CAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD-----VERSNNGNGEPSV------EIDIQNSQDSLES---GYSTDSPPNFP 664
            LDP +L KIP+  ++ +  +  LE C+VCLSE E+ ++ R+LPKC H FHV+CID WF+S S+CPLCR PV       E        PSV      E    +S D  ES     S+ SP  FP
Sbjct:   88 LDPTVLEKIPIFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFRSRSSCPLCRAPVQPAQPVTEPEPVAAVFPSVKPIEDTEAGSSSSSDESESSTPSSSSGSPVRFP 210          
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL3A_ARATH (RING-H2 finger protein ATL3A OS=Arabidopsis thaliana GN=ATL3A PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 6.401e-18
Identity = 49/128 (38.28%), Postives = 70/128 (54.69%), Query Frame = 2
Query:  338 GLDPAILRKIPVVAFNQQD-FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCR----------------NPVDVERSNNGNGEPS---VEIDIQNSQDSLE--SGYSTDSPP 655
            GLD ++++ I V  + + D F +  +C+VCLSE ++ E  RLLPKCNH FHV CID W +SHS CPLCR                  +  E ++   G+ S   V +D++NS+   E  +  ST  PP
Sbjct:  133 GLDESLIKSITVYKYRKMDGFVESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRAFIVTSSAVEIVDLTNQQIVTENNSISTGDDSVVVVNLDLENSRSRNETVNEGSTPKPP 260          
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL5G_ARATH (Probable RING-H2 finger protein ATL5G OS=Arabidopsis thaliana GN=ATL5G PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.360e-18
Identity = 42/96 (43.75%), Postives = 59/96 (61.46%), Query Frame = 2
Query:  338 GLDPAILRKIPVVAFNQQD-FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNNGNGEPSVEIDIQNSQDS 622
            GL+ ++++ I V  +   D F DG +C+VCLSE E+ E  RLLPKCNH FH+ CID W +SHS CPLCR  V    +   +   +V + + N  +S
Sbjct:  116 GLNESMIKSITVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFVTGVNNPTASVGQNVSVVVANQSNS 211          
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL3H_ARATH (Putative RING-H2 finger protein ATL3H OS=Arabidopsis thaliana GN=ATL3H PE=5 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.862e-17
Identity = 40/83 (48.19%), Postives = 51/83 (61.45%), Query Frame = 2
Query:  305 PGQDPAVTLRAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD 553
            P     V    G++P++L  IPVV+FN   FKD +EC VCLS+  D +KAR+LP CNH FH +  D W  S  TCP CR  V+
Sbjct:   43 PSHSLHVIKATGINPSVLLSIPVVSFNANAFKDNIECVVCLSKFIDEDKARVLPSCNHCFHFDFTDTWLHSDYTCPNCRKNVE 125          
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL5B_ARATH (RING-H2 finger protein ATL5B OS=Arabidopsis thaliana GN=ATL5B PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.149e-17
Identity = 41/97 (42.27%), Postives = 57/97 (58.76%), Query Frame = 2
Query:  299 FAPGQDPAVT---LRAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNNGNG 580
            F P +DP  T   +  G+    L+ IPV +++ +      EC +CL +  +GE  R+LPKCNHGFHV+CID W  SHS+CP CR  + +E     NG
Sbjct:   72 FTPNEDPVDTNANVAKGIKKRALKVIPVDSYSPELKMKATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHSSCPTCRQSL-LEHQTPANG 167          
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL4J_ARATH (RING-H2 finger protein ATL4J OS=Arabidopsis thaliana GN=ATL4J PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 4.149e-17
Identity = 40/86 (46.51%), Postives = 55/86 (63.95%), Query Frame = 2
Query:  335 AGLDPAILRKIPVVAFNQ-QDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSN----NGN 577
            +GLD   +  +P+  F+  +  K GL+C+VCLS+ E  E  RLLPKC H FH+ CID W + H+TCPLCR+ V +E  +    NGN
Sbjct:   96 SGLDKTAIESLPLFRFSALKGSKQGLDCSVCLSKFESVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRDRVSMEEDSSVLTNGN 181          
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL1B_ARATH (RING-H2 finger protein ATL1B OS=Arabidopsis thaliana GN=ATL1B PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.149e-17
Identity = 44/120 (36.67%), Postives = 64/120 (53.33%), Query Frame = 2
Query:  311 QDPAVTLRAGLDPAILRKIPVVAFNQQ--DFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNNGNG-----------EPSVEIDIQNSQDSLES 631
            Q P      GL   +L+ +P + F+ +  + +   ECA+CL+E   G++ R+LP+C HGFHV CID W  SHS+CP CR  + V R +   G           EP +EI I+  +D   S
Sbjct:   75 QPPVAAANKGLKKKVLQSLPKLTFSPESPESEKFAECAICLAEFSAGDELRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVVARCHKCGGLPGSSSSGLESEPEIEIRIKQGEDDPNS 194          
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL5F_ARATH (RING-H2 finger protein ATL5F OS=Arabidopsis thaliana GN=ATL5F PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.419e-17
Identity = 45/106 (42.45%), Postives = 57/106 (53.77%), Query Frame = 2
Query:  338 GLDPAILRKIPVVAFNQ-QDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPV-------DVERSNNGNGEPSVEIDIQNSQDSLES 631
            GL  + +  I VV F + +   DG EC+VCL+E E+ E  RLLPKC+H FH+ CID W  SH  CPLCR PV         E   N   +     D++  QDS  S
Sbjct:  109 GLHRSAINSITVVGFKKGEGIIDGTECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVLLITEPPHQETETNHQPDSESSNDLRGRQDSSRS 214          
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL1K_ARATH (RING-H2 finger protein ATL1K OS=Arabidopsis thaliana GN=ATL1K PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.077e-17
Identity = 39/71 (54.93%), Postives = 47/71 (66.20%), Query Frame = 2
Query:  338 GLDPAILRKIPVVAFNQQDFKDGL--ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRN 544
            G+    LR  PVV+++ +    GL  EC +CLS+   GE+ RLLPKCNHGFHV CID W Q H TCP CRN
Sbjct:  108 GIKKKALRMFPVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQHLTCPKCRN 178          
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL5O_ARATH (RING-H2 finger protein ATL5O OS=Arabidopsis thaliana GN=ATL5O PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.577e-16
Identity = 42/109 (38.53%), Postives = 64/109 (58.72%), Query Frame = 2
Query:  338 GLDPAILRKIPVVAF--NQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNNGNGEPSVEIDIQNSQDSLESGYSTDSPPN 658
            GLD +++  IP+  +  N+++  +  EC +CL   E G+  R L  C HGFHVECIDMW  SHSTCPLCR+PV    S+  N + +V    + ++  L+   + ++  N
Sbjct:  111 GLDSSVISSIPLFVYEENEEEEDEEEECVICLGLWEAGDFGRKLRNCGHGFHVECIDMWLSSHSTCPLCRSPVLAAVSDEENLKLAVNAVEEEAEVRLQMSPAGENESN 219          
The following BLAST results are available for this feature:
BLAST of EY659180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
ATL3L_ARATH2.873e-1843.09RING-H2 finger protein ATL3L OS=Arabidopsis thalia... [more]
ATL3A_ARATH6.401e-1838.28RING-H2 finger protein ATL3A OS=Arabidopsis thalia... [more]
ATL5G_ARATH8.360e-1843.75Probable RING-H2 finger protein ATL5G OS=Arabidops... [more]
ATL3H_ARATH1.862e-1748.19Putative RING-H2 finger protein ATL3H OS=Arabidops... [more]
ATL5B_ARATH4.149e-1742.27RING-H2 finger protein ATL5B OS=Arabidopsis thalia... [more]
ATL4J_ARATH4.149e-1746.51RING-H2 finger protein ATL4J OS=Arabidopsis thalia... [more]
ATL1B_ARATH4.149e-1736.67RING-H2 finger protein ATL1B OS=Arabidopsis thalia... [more]
ATL5F_ARATH5.419e-1742.45RING-H2 finger protein ATL5F OS=Arabidopsis thalia... [more]
ATL1K_ARATH7.077e-1754.93RING-H2 finger protein ATL1K OS=Arabidopsis thalia... [more]
ATL5O_ARATH1.577e-1638.53RING-H2 finger protein ATL5O OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-004-C08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659180 ID=EY659180; Name=EY659180; organism=Citrus sinensis; type=EST; length=909bp
CTTTCGTTTCTTGTATAAAGTTTCTCTCGTTCCGACACAAGCACACAAAA
ATCCTCATCTGGGTTTGTTTTGCTTCTAACGAAAAATGAGTGCCTCTGAC
GGTGATGAAAATGGATTTAACAACACCGGTTCTCTTGAAATAACGGGACA
AATCATGGTGATAGCAATAATTGTTCTCTTTTTCGTAGTGGTCTTTATTC
TGTTTCTTCACCTGTACGCCAAGTGGTTCTGGTGGCGGATTGAGCAGACG
CCGGAACCTTCTCCCAGTCGTAGCCACCGCCGCCGCCGTCGTTTTGTCTT
TGCTCCCGGGCAGGACCCTGCTGTCACTCTCCGTGCTGGGCTTGATCCTG
CAATCCTGAGGAAAATCCCTGTGGTTGCATTCAACCAGCAGGACTTTAAA
GATGGACTTGAATGTGCAGTGTGCTTAAGCGAGCTTGAAGATGGAGAGAA
AGCTAGGCTGCTGCCGAAATGTAACCATGGGTTTCATGTTGAGTGCATTG
ACATGTGGTTTCAGTCTCACTCAACTTGCCCTCTCTGTAGGAACCCCGTT
GATGTTGAACGCTCAAACAATGGCAACGGTGAACCATCAGTGGAGATTGA
TATTCAGAATTCACAAGATAGTTTGGAATCTGGGTACTCAACAGATTCAC
CTCCGAATTTCCCTACTAATGTGCTGTTCTGGGGAAATGAAAATCTGGTT
AGCTCTGCTGGTGGTTGCGTGCACGAGGGNTGTTCTNCATCATCATCTNC
TTCTTCTTCTTCTTCTCTACTGAGATGAATATANNTCGCGGGGTGCTGAA
AATGTGGTGATCGATATTCCTGTAATAGTATGAGTGAGCATTNCNATCAT
TGTCACCTGTCGAGGAACAAAGTCGNCTATGACACAGATTGAGTCATTGA
AAAGCTTTG
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