EY659180

Overview
NameEY659180
Unique NameEY659180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length909
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659180_ssr277 microsatellite EY659180_ssr277:277..288. BLAST: Citrus ESTs to Prunus persica proteins V1
EY659180_ssr750 microsatellite EY659180_ssr750:750..764. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL1J_ARATH (RING-H2 finger protein ATL1J OS=Arabidopsis thaliana GN=ATL1J PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.059e-16
Identity = 38/78 (48.72%), Postives = 50/78 (64.10%), Query Frame = 2
Query:  317 PAVTLRAGLDPAILRKIPVVAFNQQDFKDGL--ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRN 544
            P  +   G+    LR  PVV+++++    G+  EC +CLS+   GE+ RLLPKCNHGFHV CID W Q H TCP CR+
Sbjct:  101 PRSSSNKGIKKKALRMFPVVSYSREMNLPGIGEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQHHLTCPKCRH 178          
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL1A_ARATH (RING-H2 finger protein ATL1A OS=Arabidopsis thaliana GN=ATL1A PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.587e-16
Identity = 37/84 (44.05%), Postives = 53/84 (63.10%), Query Frame = 2
Query:  338 GLDPAILRKIPVVAFNQQDF--------KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERS 565
            GLD + +R IPV  F ++D         K+  EC+VCL+E ++ EK R++P C H FH++CID+W Q ++ CPLCR  V  E S
Sbjct:  101 GLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSVSCEAS 184          
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL5K_ARATH (RING-H2 finger protein ATL5K OS=Arabidopsis thaliana GN=ATL5K PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.991e-16
Identity = 43/105 (40.95%), Postives = 64/105 (60.95%), Query Frame = 2
Query:  311 QDPAVT----LRA-GLDPAILRKIPVVAFNQQ-DFKDGL--------------ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERS 565
            QDP +     LR+ GLD +++R IP+  F ++ D  DG+              EC+VCLSE +D EK R++P C+H FH++CID+W Q+++ CPLCR  V  + S
Sbjct:   84 QDPLMVYSPELRSRGLDESVIRAIPIFKFKKRYDQNDGVFTGEGEEEEEKRSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRVSCDTS 188          
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL5A_ARATH (RING-H2 finger protein ATL5A OS=Arabidopsis thaliana GN=ATL5A PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.991e-16
Identity = 37/72 (51.39%), Postives = 46/72 (63.89%), Query Frame = 2
Query:  332 RAGLDPAILRKIPVVAFNQQDFK-DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRN 544
            RAGL    L+K PV  +   + K    ECA+CL E  DGE+ R+LP CNH FH+ CID W  SHS+CP CR+
Sbjct:   77 RAGLKKRELKKFPVAEYGSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSSCPNCRH 148          
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL2H_ARATH (RING-H2 finger protein ATL2H OS=Arabidopsis thaliana GN=ATL2H PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.991e-16
Identity = 42/95 (44.21%), Postives = 56/95 (58.95%), Query Frame = 2
Query:  338 GLDPAILRKIPVVAFNQQDFKD-GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNNGNGEP---SVEIDIQN 610
            GLDP I+R  PV  ++    K+ G ECA+CLSE  D +  RL+  C H FH  CID+WF+ H TCP+CR  +D     +G  E    +V I IQ+
Sbjct:   77 GLDPFIIRSFPVFHYSSATKKNHGTECAICLSEFSDEDTVRLITVCRHPFHSNCIDLWFELHKTCPVCRCELDPGMIGSGRLESFHNTVTITIQD 171          
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL1I_ARATH (RING-H2 finger protein ATL1I OS=Arabidopsis thaliana GN=ATL1I PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.991e-16
Identity = 37/78 (47.44%), Postives = 50/78 (64.10%), Query Frame = 2
Query:  317 PAVTLRAGLDPAILRKIPVVAFNQQDFKDGL--ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRN 544
            P  +   G++   LR  PVV+++ +    GL  EC +CLS+   GE+ R+LPKC+HGFHV CID W Q H TCP CR+
Sbjct:  102 PCGSSNKGINKKALRMFPVVSYSPEMNLPGLGEECVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQHLTCPKCRH 179          
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL2G_ARATH (RING-H2 finger protein ATL2G OS=Arabidopsis thaliana GN=ATL2G PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.825e-16
Identity = 47/131 (35.88%), Postives = 65/131 (49.62%), Query Frame = 2
Query:  338 GLDPAILRKIPVVAFNQQDF----KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNNGNGEPSVEI-------DIQNSQDSLESGYSTDSPPNFPTNVLFWGNENL 697
            GLD   +   P   +++       K G+ECAVCL E ED E  RL+P C H FH +C+D+W   HSTCPLCR   D+  +  G+ + S E         I +S D  E G   +S      + + W N N+
Sbjct:  106 GLDAEAIETFPTFLYSEVKAVRIGKGGVECAVCLCEFEDDETLRLMPPCCHVFHADCVDVWLSEHSTCPLCR--ADLVLNQQGDDDDSTESYSGTDPGTISSSTDP-ERGMVLESSDAHLLDAVTWSNSNI 233          
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL4H_ARATH (Putative RING-H2 finger protein ATL4H OS=Arabidopsis thaliana GN=ATL4H PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.022e-15
Identity = 39/77 (50.65%), Postives = 50/77 (64.94%), Query Frame = 2
Query:  335 AGLDPAILRKIPVVAF--NQQDFK-DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDV 556
            AGLD  +++KI       +Q  FK +G +C++CL E  + E  RLLPKCNH FHV CID W +SHS CPLCR  + V
Sbjct:  152 AGLDDTLIKKIGFFKLKKHQNGFKINGTDCSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKIIV 228          
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL3C_ARATH (RING-H2 finger protein ATL3C OS=Arabidopsis thaliana GN=ATL3C PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.743e-15
Identity = 39/77 (50.65%), Postives = 49/77 (63.64%), Query Frame = 2
Query:  338 GLDPAILRKIPVVAFNQQ--DFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVER 562
            GL    L++IPV  +     D K   EC +CL + EDGEK R+LPKCNHGFHV CID W  S S+CP CR  + +E+
Sbjct:   88 GLKKQALKQIPVGLYGSGIIDMK-ATECLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLLEQ 163          
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL1R_ARATH (RING-H2 finger protein ATL1R OS=Arabidopsis thaliana GN=ATL1R PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.277e-15
Identity = 41/118 (34.75%), Postives = 59/118 (50.00%), Query Frame = 2
Query:  317 PAVTLRAGLDPAILRKIPVVAFNQQD--FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNNGNGEPSVEIDIQNSQDSLESGYSTDSPPNFP 664
            P      GL   +LR +P + ++      +  +ECA+CL+E   G++ R+LP+C HGFHV CID W  SHS+CP CR  + V R +   G P            ++     D P N P
Sbjct:   70 PVAAANKGLKKKVLRSLPKLTYSPDSPPAEKLVECAICLTEFAAGDELRVLPQCGHGFHVSCIDTWLGSHSSCPSCRQILVVTRCHKCGGLPGSSSSGPEPDTRIKQ--REDGPDNLP 185          
The following BLAST results are available for this feature:
BLAST of EY659180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
ATL1J_ARATH2.059e-1648.72RING-H2 finger protein ATL1J OS=Arabidopsis thalia... [more]
ATL1A_ARATH4.587e-1644.05RING-H2 finger protein ATL1A OS=Arabidopsis thalia... [more]
ATL5K_ARATH5.991e-1640.95RING-H2 finger protein ATL5K OS=Arabidopsis thalia... [more]
ATL5A_ARATH5.991e-1651.39RING-H2 finger protein ATL5A OS=Arabidopsis thalia... [more]
ATL2H_ARATH5.991e-1644.21RING-H2 finger protein ATL2H OS=Arabidopsis thalia... [more]
ATL1I_ARATH5.991e-1647.44RING-H2 finger protein ATL1I OS=Arabidopsis thalia... [more]
ATL2G_ARATH7.825e-1635.88RING-H2 finger protein ATL2G OS=Arabidopsis thalia... [more]
ATL4H_ARATH1.022e-1550.65Putative RING-H2 finger protein ATL4H OS=Arabidops... [more]
ATL3C_ARATH1.743e-1550.65RING-H2 finger protein ATL3C OS=Arabidopsis thalia... [more]
ATL1R_ARATH2.277e-1534.75RING-H2 finger protein ATL1R OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-004-C08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659180 ID=EY659180; Name=EY659180; organism=Citrus sinensis; type=EST; length=909bp
CTTTCGTTTCTTGTATAAAGTTTCTCTCGTTCCGACACAAGCACACAAAA
ATCCTCATCTGGGTTTGTTTTGCTTCTAACGAAAAATGAGTGCCTCTGAC
GGTGATGAAAATGGATTTAACAACACCGGTTCTCTTGAAATAACGGGACA
AATCATGGTGATAGCAATAATTGTTCTCTTTTTCGTAGTGGTCTTTATTC
TGTTTCTTCACCTGTACGCCAAGTGGTTCTGGTGGCGGATTGAGCAGACG
CCGGAACCTTCTCCCAGTCGTAGCCACCGCCGCCGCCGTCGTTTTGTCTT
TGCTCCCGGGCAGGACCCTGCTGTCACTCTCCGTGCTGGGCTTGATCCTG
CAATCCTGAGGAAAATCCCTGTGGTTGCATTCAACCAGCAGGACTTTAAA
GATGGACTTGAATGTGCAGTGTGCTTAAGCGAGCTTGAAGATGGAGAGAA
AGCTAGGCTGCTGCCGAAATGTAACCATGGGTTTCATGTTGAGTGCATTG
ACATGTGGTTTCAGTCTCACTCAACTTGCCCTCTCTGTAGGAACCCCGTT
GATGTTGAACGCTCAAACAATGGCAACGGTGAACCATCAGTGGAGATTGA
TATTCAGAATTCACAAGATAGTTTGGAATCTGGGTACTCAACAGATTCAC
CTCCGAATTTCCCTACTAATGTGCTGTTCTGGGGAAATGAAAATCTGGTT
AGCTCTGCTGGTGGTTGCGTGCACGAGGGNTGTTCTNCATCATCATCTNC
TTCTTCTTCTTCTTCTCTACTGAGATGAATATANNTCGCGGGGTGCTGAA
AATGTGGTGATCGATATTCCTGTAATAGTATGAGTGAGCATTNCNATCAT
TGTCACCTGTCGAGGAACAAAGTCGNCTATGACACAGATTGAGTCATTGA
AAAGCTTTG
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