EY659180

Overview
NameEY659180
Unique NameEY659180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length909
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659180_ssr277 microsatellite EY659180_ssr277:277..288. BLAST: Citrus ESTs to Prunus persica proteins V1
EY659180_ssr750 microsatellite EY659180_ssr750:750..764. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL1D_ARATH (RING-H2 finger protein ATL1D OS=Arabidopsis thaliana GN=ATL1D PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.973e-15
Identity = 34/70 (48.57%), Postives = 49/70 (70.00%), Query Frame = 2
Query:  335 AGLDPAILRKIPVVAFNQ-QDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCR 541
            +GLD A++  +PV  + + +  K+  +CAVCL E  + +K RLLP C+H FH++CID W  S+STCPLCR
Sbjct:  117 SGLDQALIDALPVFLYKEIKGTKEPFDCAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNSTCPLCR 186          
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL4D_ARATH (Putative RING-H2 finger protein ATL4D OS=Arabidopsis thaliana GN=ATL4D PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.883e-15
Identity = 38/104 (36.54%), Postives = 62/104 (59.62%), Query Frame = 2
Query:  329 LRAGLDPAILRKIPVVAFNQ-QDFK---DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNNGNGEPSVEIDIQNSQDSLE 628
            +R G+D  ++   P   +++ + FK    G+ECA+CL E ED E  R +P C+H FH  CID W  S STCP+CR  + + +S +    PS++++  N+Q  ++
Sbjct:   88 VRRGIDKDVIESFPAFLYSEVKAFKIGNGGVECAICLCEFEDEEPLRWMPPCSHTFHANCIDEWLSSRSTCPVCRANLSL-KSGDSFPHPSMDVETGNAQRGVQ 190          
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL3D_ARATH (RING-H2 finger protein ATL3D OS=Arabidopsis thaliana GN=ATL3D PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.883e-15
Identity = 34/79 (43.04%), Postives = 54/79 (68.35%), Query Frame = 2
Query:  338 GLDPAILRKIPVVAFNQQ--DFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSN 568
            GLDPA +R +PVV   ++  + ++  EC +CL   E+GEK ++LP C+H +H EC+D W ++ S+CPLCR  + V+ S+
Sbjct:   80 GLDPAEIRSLPVVLCRRERAEEEEEKECCICLGGFEEGEKMKVLPPCSHCYHCECVDRWLKTESSCPLCRVSIRVDSSS 158          
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL5H_ARATH (RING-H2 finger protein ATL5H OS=Arabidopsis thaliana GN=ATL5H PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 5.072e-15
Identity = 42/103 (40.78%), Postives = 54/103 (52.43%), Query Frame = 2
Query:  326 TLRAGLDPAILRKIPVVAFN----QQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNNGNGEPSVEIDIQNSQDS 622
            T+  GLD   +   P   ++    Q+  K  LECA+CL+E ED E  RLLPKC+H FH  CI  W Q H TCP+CR  +          E  VE D++  Q S
Sbjct:   91 TVARGLDAETIETFPTFVYSEVKTQKIGKGALECAICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQGHVTCPVCRTNL---AEQTPEPEVVVETDLEAQQQS 190          
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL3B_ARATH (RING-H2 finger protein ATL3B OS=Arabidopsis thaliana GN=ATL3B PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 5.072e-15
Identity = 40/96 (41.67%), Postives = 55/96 (57.29%), Query Frame = 2
Query:  338 GLDPAILRKIPVVAFN----QQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCR-----NPVDVERSNNGNGEPSVEI 598
            GLD +++   P   ++    Q+  K  LECA+CL+E ED E  RLLPKC+H FH  CID W ++H TCP+CR        + E    G  EP +E+
Sbjct:   99 GLDVSVVETFPTFLYSDVKTQKLGKGELECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCRANLAEQVAEGESVEPGGTEPDLEL 194          
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL4K_ARATH (RING-H2 finger protein ATL4K OS=Arabidopsis thaliana GN=ATL4K PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 6.624e-15
Identity = 43/109 (39.45%), Postives = 66/109 (60.55%), Query Frame = 2
Query:  335 AGLDPAILRKIPVVAFNQQ-DFKD-GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNNGNGEPSVEIDIQNSQD--SLESGYSTDS 649
            +G+D + +  +PV  +      K+   +CAVCL E E  +K RLLPKC+H FH++CID W  SHSTCPLCR+ +  + S++ +   S  + ++++ D  S E G   DS
Sbjct:  106 SGVDQSFIDTLPVFHYKSIIGLKNYPFDCAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWLLSHSTCPLCRSSLLSDLSSHQDPRSSFLLVLESASDHSSREIGGDRDS 214          
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL4F_ARATH (RING-H2 finger protein ATL4F OS=Arabidopsis thaliana GN=ATL4F PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.130e-14
Identity = 40/124 (32.26%), Postives = 62/124 (50.00%), Query Frame = 2
Query:  299 FAPGQDPAVTLRAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCR------NPVDVER---------SNNGNGEPSVEIDIQNSQDSL 625
            F P  +   T   GL   I   +P+V + +    +  +C+VCL + +  EK + +P C H FH+ECID+W  SH+TCPLCR        VD+            N   GE S + D Q++ +++
Sbjct:   59 FVPTNNNLSTAELGLSKDIREMLPIVIYKESFTVNDTQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPLCRLSLIPKPSVDLSHQSIEIVSSIENTNGGEASTQPDSQSATEAI 182          
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL2E_ARATH (RING-H2 finger protein ATL2E OS=Arabidopsis thaliana GN=ATL2E PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.130e-14
Identity = 38/107 (35.51%), Postives = 57/107 (53.27%), Query Frame = 2
Query:  326 TLRAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNNGNGEPSVEIDIQNSQDSLESGYSTD 646
            + R GLD   +R +PV  + +   +   +C +CLS+ E+GE  +++P C H FHV+C+D W  S+ TCPLCR+       + G  EP         QDS E   + D
Sbjct:  111 SFRRGLDSQAVRSLPVYRYTKAAKQRNEDCVICLSDFEEGETVKVIPHCGHVFHVDCVDTWLSSYVTCPLCRSNQLFSDKDLGMQEPP-------DQDSAEEHDTCD 210          
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL2C_ARATH (Putative RING-H2 finger protein ATL2C OS=Arabidopsis thaliana GN=ATL2C PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.130e-14
Identity = 41/98 (41.84%), Postives = 59/98 (60.20%), Query Frame = 2
Query:  335 AGLDPAILRKIPVVAFNQ-QDFK-DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNNGNGEPSVEIDIQNSQDS 622
            +G+D +++  +PV  +      K    +C VCL E E  +K RLLPKC+H FHVECID W  SHSTCPLCR+ +    S++ N   S  + +++ Q S
Sbjct:   98 SGVDQSLIDTLPVFHYKSIVGLKISPFDCPVCLCEFETEDKLRLLPKCSHAFHVECIDTWLLSHSTCPLCRSNLLSGFSSHHNLSSSYLLVLESEQSS 195          
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL4E_ARATH (RING-H2 finger protein ATL4E OS=Arabidopsis thaliana GN=ATL4E PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.476e-14
Identity = 40/124 (32.26%), Postives = 62/124 (50.00%), Query Frame = 2
Query:  299 FAPGQDPAVTLRAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERS---------------NNGNGEPSVEIDIQNSQDSL 625
            F P  +   T   GL   I   +PVV + +       +C+VCL + +  EK + +P C H FH+ECID+W  SH+TCPLCR  +  + S               N+  GE S + D Q++ +++
Sbjct:   73 FVPTNNNLSTAELGLSKDIREMLPVVIYKESFIVKDSQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPLCRLSLIPKPSLDLSHQSTEIVSSIENSNGGEASTQPDSQSATEAI 196          
The following BLAST results are available for this feature:
BLAST of EY659180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
ATL1D_ARATH2.973e-1548.57RING-H2 finger protein ATL1D OS=Arabidopsis thalia... [more]
ATL4D_ARATH3.883e-1536.54Putative RING-H2 finger protein ATL4D OS=Arabidops... [more]
ATL3D_ARATH3.883e-1543.04RING-H2 finger protein ATL3D OS=Arabidopsis thalia... [more]
ATL5H_ARATH5.072e-1540.78RING-H2 finger protein ATL5H OS=Arabidopsis thalia... [more]
ATL3B_ARATH5.072e-1541.67RING-H2 finger protein ATL3B OS=Arabidopsis thalia... [more]
ATL4K_ARATH6.624e-1539.45RING-H2 finger protein ATL4K OS=Arabidopsis thalia... [more]
ATL4F_ARATH1.130e-1432.26RING-H2 finger protein ATL4F OS=Arabidopsis thalia... [more]
ATL2E_ARATH1.130e-1435.51RING-H2 finger protein ATL2E OS=Arabidopsis thalia... [more]
ATL2C_ARATH1.130e-1441.84Putative RING-H2 finger protein ATL2C OS=Arabidops... [more]
ATL4E_ARATH1.476e-1432.26RING-H2 finger protein ATL4E OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-004-C08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659180 ID=EY659180; Name=EY659180; organism=Citrus sinensis; type=EST; length=909bp
CTTTCGTTTCTTGTATAAAGTTTCTCTCGTTCCGACACAAGCACACAAAA
ATCCTCATCTGGGTTTGTTTTGCTTCTAACGAAAAATGAGTGCCTCTGAC
GGTGATGAAAATGGATTTAACAACACCGGTTCTCTTGAAATAACGGGACA
AATCATGGTGATAGCAATAATTGTTCTCTTTTTCGTAGTGGTCTTTATTC
TGTTTCTTCACCTGTACGCCAAGTGGTTCTGGTGGCGGATTGAGCAGACG
CCGGAACCTTCTCCCAGTCGTAGCCACCGCCGCCGCCGTCGTTTTGTCTT
TGCTCCCGGGCAGGACCCTGCTGTCACTCTCCGTGCTGGGCTTGATCCTG
CAATCCTGAGGAAAATCCCTGTGGTTGCATTCAACCAGCAGGACTTTAAA
GATGGACTTGAATGTGCAGTGTGCTTAAGCGAGCTTGAAGATGGAGAGAA
AGCTAGGCTGCTGCCGAAATGTAACCATGGGTTTCATGTTGAGTGCATTG
ACATGTGGTTTCAGTCTCACTCAACTTGCCCTCTCTGTAGGAACCCCGTT
GATGTTGAACGCTCAAACAATGGCAACGGTGAACCATCAGTGGAGATTGA
TATTCAGAATTCACAAGATAGTTTGGAATCTGGGTACTCAACAGATTCAC
CTCCGAATTTCCCTACTAATGTGCTGTTCTGGGGAAATGAAAATCTGGTT
AGCTCTGCTGGTGGTTGCGTGCACGAGGGNTGTTCTNCATCATCATCTNC
TTCTTCTTCTTCTTCTCTACTGAGATGAATATANNTCGCGGGGTGCTGAA
AATGTGGTGATCGATATTCCTGTAATAGTATGAGTGAGCATTNCNATCAT
TGTCACCTGTCGAGGAACAAAGTCGNCTATGACACAGATTGAGTCATTGA
AAAGCTTTG
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