EY659180

Overview
NameEY659180
Unique NameEY659180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length909
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL4C_ARATH (Putative RING-H2 finger protein ATL4C OS=Arabidopsis thaliana GN=ATL4C PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.476e-14
Identity = 40/107 (37.38%), Postives = 61/107 (57.01%), Query Frame = 2
Query:  302 APGQDPAVT-LRAGLDPAILRKIPVVAFNQ----QDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNNGNGEPSVEIDIQ 607
            A GQD   +  R GL+  ++   P   +++    +  K G+ECA+CLSE ED E  R +P C+H FH  CID+W  S STCP+CR  + ++    G   P + +D++
Sbjct:   81 AAGQDVLHSRARRGLEKEVIESFPTFLYSEVKGLKIGKGGVECAICLSEFEDQETLRWMPPCSHTFHANCIDVWLSSWSTCPVCRANLSLK---PGESYPYLNMDVE 184          
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL2F_ARATH (RING-H2 finger protein ATL2F OS=Arabidopsis thaliana GN=ATL2F PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.476e-14
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 2
Query:  320 AVTLRAGLDPAILRKIPVVAFNQQDFK----DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCR 541
            ++T   GLD AI+   P   +++   +     G+ECAVC+ E ED E  RL+P+C H FH +C+ +W   HSTCPLCR
Sbjct:   61 SITAVRGLDEAIINSFPTFLYSEVKERRIGIGGVECAVCICEFEDHETLRLMPECCHVFHADCVSVWLSDHSTCPLCR 138          
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL1N_ARATH (RING-H2 finger protein ATL1N OS=Arabidopsis thaliana GN=ATL1N PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.476e-14
Identity = 36/72 (50.00%), Postives = 46/72 (63.89%), Query Frame = 2
Query:  338 GLDPAILRKIPVVAFNQQDF----KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCR 541
            GLD +I+   P   ++        K+ LEC+VCL+E ED E  RL+PKC H FH  CID W +SH+TCPLCR
Sbjct:  115 GLDASIIETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLRSHTTCPLCR 186          
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL1G_ARATH (RING-H2 finger protein ATL1G OS=Arabidopsis thaliana GN=ATL1G PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.476e-14
Identity = 39/131 (29.77%), Postives = 63/131 (48.09%), Query Frame = 2
Query:  299 FAPGQDPAVTLRAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNNGNGE-------PSVEIDIQNSQDSLESGYSTDSPPNFPTN 670
            F PG   + T+  GL   +   +P+V F +       +C+VCL + +  +K + +P C H FH++CID+W  SH+TCPLCR  +   RS     +       P  E+  Q   + +     +  P + P N
Sbjct:   63 FIPGNSLS-TIELGLSKELREMLPIVVFKESFTVMDSQCSVCLGDYQPNDKLQQIPVCKHTFHMDCIDLWLTSHTTCPLCRLALIPSRSRQSQDDPVPSLVSPDEEVSSQPESEPVNHRVVSTQPESEPVN 192          
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL1O_ARATH (RING-H2 finger protein ATL1O OS=Arabidopsis thaliana GN=ATL1O PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.927e-14
Identity = 38/99 (38.38%), Postives = 53/99 (53.54%), Query Frame = 2
Query:  338 GLDPAILRKIPVVAFNQQD-FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNNGNGEPSVEIDIQNSQDSLES 631
            GL  +I+  I +  + + D   +  +C VCL+E E+ E  RLLPKCNH FH+ CID W  SH+ CPLCR  + +           VE+    S   LE+
Sbjct:  151 GLQQSIINSITICNYKRGDGLIERTDCPVCLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLCRAGIAMISVTTPRYSGPVEVTPGGSGSHLEN 249          
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL1F_ARATH (RING-H2 finger protein ATL1F OS=Arabidopsis thaliana GN=ATL1F PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.517e-14
Identity = 37/94 (39.36%), Postives = 55/94 (58.51%), Query Frame = 2
Query:  338 GLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE-RSNNGNGEPSVEIDIQNSQ 616
            GLD  I+   P   ++ +D     +C++CL+E  D +  RL+  CNH FH  CID+WF+ H TCP+CR  +DVE R++        EID+  S+
Sbjct:  130 GLDSKIIESFPEYPYSVKDHGTD-QCSICLTEFMDDDTIRLISTCNHSFHTICIDLWFEGHKTCPVCRRELDVEDRTSLEKPLEVPEIDLVRSE 222          
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL4I_ARATH (Putative RING-H2 finger protein ATL4I OS=Arabidopsis thaliana GN=ATL4I PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.294e-14
Identity = 45/117 (38.46%), Postives = 63/117 (53.85%), Query Frame = 2
Query:  311 QDPAVTLRAGLDPAILRKIPVVAFNQ----QDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNNGNGEPSVE---ID-IQNSQDSLESGY 637
            Q  A  +  GL+  I+   P   ++     ++ K GLECA+CL E +     RLL  C H FH ECID+WF+SH TCP+CR  +D       N +P+V+   ID IQ + D  E  +
Sbjct:   72 QPEAPPVNPGLELRIINSFPTFPYSSVKDLREEKYGLECAICLLEFDGDHVLRLLTTCYHVFHQECIDLWFESHRTCPVCRRDLDPPPPPE-NTKPTVDEMIIDVIQETSDDEEDDH 187          
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL2K_ARATH (RING-H2 finger protein ATL2K OS=Arabidopsis thaliana GN=ATL2K PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.294e-14
Identity = 32/74 (43.24%), Postives = 45/74 (60.81%), Query Frame = 2
Query:  332 RAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD 553
            + GLD  ++  +P      ++   G ECAVCLS LE+ + AR+LP C H FHV C+D W  + STCP+CR   +
Sbjct:   73 KRGLDSLVIASLPTFVVGIKNDVAGTECAVCLSLLEEKDNARMLPNCKHVFHVSCVDTWLTTQSTCPVCRTEAE 146          
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL3J_ARATH (RING-H2 finger protein ATL3J OS=Arabidopsis thaliana GN=ATL3J PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.608e-14
Identity = 39/100 (39.00%), Postives = 57/100 (57.00%), Query Frame = 2
Query:  350 AILRKIPVVAFN----QQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNP-----------VDVERSNNGNGEPSVEIDI 604
            ++L  +P+  F+    +    +  +CAVCLS+ E  ++ RLLP C H FH +CID+W  S+ TCPLCR+P           + V  SNNG GE S  ++I
Sbjct:   92 SVLDSLPIFKFSSVTRRSSSMNSGDCAVCLSKFEPEDQLRLLPLCCHAFHADCIDIWLVSNQTCPLCRSPLFASESDLMKSLAVVGSNNGGGENSFRLEI 191          
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL1H_ARATH (RING-H2 finger protein ATL1H OS=Arabidopsis thaliana GN=ATL1H PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.565e-14
Identity = 33/72 (45.83%), Postives = 45/72 (62.50%), Query Frame = 2
Query:  338 GLDPAILRKIPVVAFNQ----QDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCR 541
            GL   ++   P   ++Q    +  K G+ECA+CL+E ED E  RL+P C+H FH  CID+W  S STCP+CR
Sbjct:   99 GLGKDVINSFPSFLYSQVKGLKIGKGGVECAICLNEFEDEETLRLMPPCSHAFHASCIDVWLSSRSTCPVCR 170          
The following BLAST results are available for this feature:
BLAST of EY659180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
ATL4C_ARATH1.476e-1437.38Putative RING-H2 finger protein ATL4C OS=Arabidops... [more]
ATL2F_ARATH1.476e-1443.59RING-H2 finger protein ATL2F OS=Arabidopsis thalia... [more]
ATL1N_ARATH1.476e-1450.00RING-H2 finger protein ATL1N OS=Arabidopsis thalia... [more]
ATL1G_ARATH1.476e-1429.77RING-H2 finger protein ATL1G OS=Arabidopsis thalia... [more]
ATL1O_ARATH1.927e-1438.38RING-H2 finger protein ATL1O OS=Arabidopsis thalia... [more]
ATL1F_ARATH2.517e-1439.36RING-H2 finger protein ATL1F OS=Arabidopsis thalia... [more]
ATL4I_ARATH4.294e-1438.46Putative RING-H2 finger protein ATL4I OS=Arabidops... [more]
ATL2K_ARATH4.294e-1443.24RING-H2 finger protein ATL2K OS=Arabidopsis thalia... [more]
ATL3J_ARATH5.608e-1439.00RING-H2 finger protein ATL3J OS=Arabidopsis thalia... [more]
ATL1H_ARATH9.565e-1445.83RING-H2 finger protein ATL1H OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-004-C08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659180 ID=EY659180; Name=EY659180; organism=Citrus sinensis; type=EST; length=909bp
CTTTCGTTTCTTGTATAAAGTTTCTCTCGTTCCGACACAAGCACACAAAA
ATCCTCATCTGGGTTTGTTTTGCTTCTAACGAAAAATGAGTGCCTCTGAC
GGTGATGAAAATGGATTTAACAACACCGGTTCTCTTGAAATAACGGGACA
AATCATGGTGATAGCAATAATTGTTCTCTTTTTCGTAGTGGTCTTTATTC
TGTTTCTTCACCTGTACGCCAAGTGGTTCTGGTGGCGGATTGAGCAGACG
CCGGAACCTTCTCCCAGTCGTAGCCACCGCCGCCGCCGTCGTTTTGTCTT
TGCTCCCGGGCAGGACCCTGCTGTCACTCTCCGTGCTGGGCTTGATCCTG
CAATCCTGAGGAAAATCCCTGTGGTTGCATTCAACCAGCAGGACTTTAAA
GATGGACTTGAATGTGCAGTGTGCTTAAGCGAGCTTGAAGATGGAGAGAA
AGCTAGGCTGCTGCCGAAATGTAACCATGGGTTTCATGTTGAGTGCATTG
ACATGTGGTTTCAGTCTCACTCAACTTGCCCTCTCTGTAGGAACCCCGTT
GATGTTGAACGCTCAAACAATGGCAACGGTGAACCATCAGTGGAGATTGA
TATTCAGAATTCACAAGATAGTTTGGAATCTGGGTACTCAACAGATTCAC
CTCCGAATTTCCCTACTAATGTGCTGTTCTGGGGAAATGAAAATCTGGTT
AGCTCTGCTGGTGGTTGCGTGCACGAGGGNTGTTCTNCATCATCATCTNC
TTCTTCTTCTTCTTCTCTACTGAGATGAATATANNTCGCGGGGTGCTGAA
AATGTGGTGATCGATATTCCTGTAATAGTATGAGTGAGCATTNCNATCAT
TGTCACCTGTCGAGGAACAAAGTCGNCTATGACACAGATTGAGTCATTGA
AAAGCTTTG
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