EY659180

Overview
NameEY659180
Unique NameEY659180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length909
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659180_ssr277 microsatellite EY659180_ssr277:277..288. BLAST: Citrus ESTs to Prunus persica proteins V1
EY659180_ssr750 microsatellite EY659180_ssr750:750..764. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL3I_ARATH (RING-H2 finger protein ATL3I OS=Arabidopsis thaliana GN=ATL3I PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.783e-13
Identity = 33/71 (46.48%), Postives = 44/71 (61.97%), Query Frame = 2
Query:  335 AGLDPAILRKIPVVAFNQQ--DFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCR 541
            +GLD   +  +PV  +       +   +CAVCL+E  D +K RLLP C+H FH+ CID W  S+STCPLCR
Sbjct:  179 SGLDQTAIDALPVFLYGNVTISLEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPLCR 249          
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL2L_ARATH (RING-H2 finger protein ATL2L OS=Arabidopsis thaliana GN=ATL2L PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.783e-13
Identity = 33/76 (43.42%), Postives = 46/76 (60.53%), Query Frame = 2
Query:  332 RAGLDPAILRKIPVVAFNQQD--FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD 553
            + GL+P ++  +P       D       ECAVCLS L++ +KAR LP C H FHV+C+D W  + STCP+CR  V+
Sbjct:   79 KRGLNPTVIASLPTFTVGATDGVAASATECAVCLSVLKEQDKARELPNCKHIFHVDCVDTWLTTCSTCPVCRTEVE 154          
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL1C_ARATH (RING-H2 finger protein ATL1C OS=Arabidopsis thaliana GN=ATL1C PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.635e-13
Identity = 34/76 (44.74%), Postives = 45/76 (59.21%), Query Frame = 2
Query:  326 TLRAGLDPAILRKIPVVAFNQQDF----KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCR 541
            T   GLD +++   P   ++        K+ LEC VCL+E ED E  RL+P+C H FH  CID W +S +TCPLCR
Sbjct:   85 TTEPGLDASVIETFPTFPYSTVKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLRSQTTCPLCR 160          
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL5L_ARATH (Putative RING-H2 finger protein ATL5L OS=Arabidopsis thaliana GN=ATL5L PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.747e-13
Identity = 43/120 (35.83%), Postives = 66/120 (55.00%), Query Frame = 2
Query:  305 PGQDPAVTLRAGLDPAILRKIPVVAFNQ----QDFKDGLECAVCLSELEDGE-KARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNNGNGEPSVEIDIQNSQDSLESGYSTDS 649
            P Q P   +  GL+P I++  P+  F+     ++ K GLECA+CL E E+     RLL  C H FH ECID W +S+ TCP+CR  +D     N   E  +E+  +N+ ++ +   ++ S
Sbjct:   77 PVQPP---VNPGLEPHIIQSYPLFPFSSVKDLREDKYGLECAICLLEFEEEHILLRLLTTCYHVFHQECIDQWLESNKTCPVCRRNLDPNAPENIK-ELIIEVIQENAHENRDQEQTSTS 192          
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL4B_ARATH (Putative RING-H2 finger protein ATL4B OS=Arabidopsis thaliana GN=ATL4B PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.747e-13
Identity = 32/74 (43.24%), Postives = 45/74 (60.81%), Query Frame = 2
Query:  332 RAGLDPAILRKIPVVAFNQ----QDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCR 541
            R GL+  ++   P+  +++    +  K G+ECA+CLSE  D E  R +P C+H FH  CID+W  S STCP CR
Sbjct:   92 RRGLEKELVESFPIFLYSEVKGLKIGKGGVECAICLSEFVDKETLRWMPPCSHTFHANCIDVWLSSQSTCPACR 165          
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL1L_ARATH (RING-H2 finger protein ATL1L OS=Arabidopsis thaliana GN=ATL1L PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.747e-13
Identity = 34/78 (43.59%), Postives = 46/78 (58.97%), Query Frame = 2
Query:  317 PAVTLRAGLDPAILRKIPVVAFNQQDFKDGL--ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRN 544
            P      G+    L+    V+++ +    GL  ECA+CLSE    E+ +LLP C+HGFHV CID W  SHS+CP CR+
Sbjct:   97 PVRLTNTGVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDKWLSSHSSCPTCRH 174          
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL5I_ARATH (RING-H2 finger protein ATL5I OS=Arabidopsis thaliana GN=ATL5I PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.200e-13
Identity = 35/80 (43.75%), Postives = 46/80 (57.50%), Query Frame = 2
Query:  335 AGLDPAILRKIPVVAFNQQDFKDG-----------LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCR 541
            +GLD A +  +PV  + +     G            +CAVCL E  + +K RLLP C+H FH+ CID W QS+STCPLCR
Sbjct:  106 SGLDQAFIDALPVFHYKEIVGSAGGGGGNGAAQEPFDCAVCLCEFSEKDKLRLLPMCSHAFHLNCIDTWLQSNSTCPLCR 185          
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL5N_ARATH (Putative RING-H2 finger protein ATL5N OS=Arabidopsis thaliana GN=ATL5N PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.097e-13
Identity = 45/114 (39.47%), Postives = 61/114 (53.51%), Query Frame = 2
Query:  335 AGLDPAILRKIPVVAFN-----QQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNNGNGEPSV-----EIDIQNSQDSLESGYSTD 646
            A +D + +  +P++ +      + D  D   CAVCL E    ++ RLLPKC+H FHVECID W  ++STCPLCR+ + +     G    S      E D  NSQDS  S   TD
Sbjct:   94 AEIDQSFIDALPLLHYKTMIGLRHDLSD---CAVCLREFTAEDELRLLPKCSHAFHVECIDTWLLTNSTCPLCRDNL-LLLGLTGTASSSTIVLVHESDGDNSQDSDSSFMLTD 203          
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: ATL2A_ARATH (RING-H2 finger protein ATL2A OS=Arabidopsis thaliana GN=ATL2A PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.097e-13
Identity = 35/88 (39.77%), Postives = 46/88 (52.27%), Query Frame = 2
Query:  401 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNNGNGEPSVEIDIQNSQDSLESGYSTDSPPNFP 664
            D  ECA+CL++  DGE+ R+LP C H FHVECID W  S S+CP CR  +   R +      + E+  Q  +       ST  P   P
Sbjct:   98 DSTECAICLTDFADGEEIRVLPLCGHSFHVECIDKWLVSRSSCPSCRRILTPVRCDRCGHASTAEMKDQAHRHQHHQHSSTTIPTFLP 185          
BLAST of EY659180 vs. ExPASy Swiss-Prot
Match: RN167_RAT (E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus GN=Rnf167 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.804e-12
Identity = 39/108 (36.11%), Postives = 59/108 (54.63%), Query Frame = 2
Query:  356 LRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWF-QSHSTCPLCRNPVDVERSNNGNGEPSVEIDIQNSQDSLESGYSTDSPPNFPTNVL 676
            L++IP   + + D  D   CA+CL E EDG+K R+LP C H +H  C+D W  Q+  TCP+C+ PV     + G G+   E + Q  ++  + G   D P +  T +L
Sbjct:  213 LKQIPTHDYQKGDEYD--VCAICLDEYEDGDKLRILP-CAHAYHSRCVDPWLTQTRKTCPICKQPV-----HRGPGDEEQEEETQGQEEEGDEGEPRDQPASEWTPLL 312          
The following BLAST results are available for this feature:
BLAST of EY659180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
ATL3I_ARATH2.783e-1346.48RING-H2 finger protein ATL3I OS=Arabidopsis thalia... [more]
ATL2L_ARATH2.783e-1343.42RING-H2 finger protein ATL2L OS=Arabidopsis thalia... [more]
ATL1C_ARATH3.635e-1344.74RING-H2 finger protein ATL1C OS=Arabidopsis thalia... [more]
ATL5L_ARATH4.747e-1335.83Putative RING-H2 finger protein ATL5L OS=Arabidops... [more]
ATL4B_ARATH4.747e-1343.24Putative RING-H2 finger protein ATL4B OS=Arabidops... [more]
ATL1L_ARATH4.747e-1343.59RING-H2 finger protein ATL1L OS=Arabidopsis thalia... [more]
ATL5I_ARATH6.200e-1343.75RING-H2 finger protein ATL5I OS=Arabidopsis thalia... [more]
ATL5N_ARATH8.097e-1339.47Putative RING-H2 finger protein ATL5N OS=Arabidops... [more]
ATL2A_ARATH8.097e-1339.77RING-H2 finger protein ATL2A OS=Arabidopsis thalia... [more]
RN167_RAT1.804e-1236.11E3 ubiquitin-protein ligase RNF167 OS=Rattus norve... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-004-C08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659180 ID=EY659180; Name=EY659180; organism=Citrus sinensis; type=EST; length=909bp
CTTTCGTTTCTTGTATAAAGTTTCTCTCGTTCCGACACAAGCACACAAAA
ATCCTCATCTGGGTTTGTTTTGCTTCTAACGAAAAATGAGTGCCTCTGAC
GGTGATGAAAATGGATTTAACAACACCGGTTCTCTTGAAATAACGGGACA
AATCATGGTGATAGCAATAATTGTTCTCTTTTTCGTAGTGGTCTTTATTC
TGTTTCTTCACCTGTACGCCAAGTGGTTCTGGTGGCGGATTGAGCAGACG
CCGGAACCTTCTCCCAGTCGTAGCCACCGCCGCCGCCGTCGTTTTGTCTT
TGCTCCCGGGCAGGACCCTGCTGTCACTCTCCGTGCTGGGCTTGATCCTG
CAATCCTGAGGAAAATCCCTGTGGTTGCATTCAACCAGCAGGACTTTAAA
GATGGACTTGAATGTGCAGTGTGCTTAAGCGAGCTTGAAGATGGAGAGAA
AGCTAGGCTGCTGCCGAAATGTAACCATGGGTTTCATGTTGAGTGCATTG
ACATGTGGTTTCAGTCTCACTCAACTTGCCCTCTCTGTAGGAACCCCGTT
GATGTTGAACGCTCAAACAATGGCAACGGTGAACCATCAGTGGAGATTGA
TATTCAGAATTCACAAGATAGTTTGGAATCTGGGTACTCAACAGATTCAC
CTCCGAATTTCCCTACTAATGTGCTGTTCTGGGGAAATGAAAATCTGGTT
AGCTCTGCTGGTGGTTGCGTGCACGAGGGNTGTTCTNCATCATCATCTNC
TTCTTCTTCTTCTTCTCTACTGAGATGAATATANNTCGCGGGGTGCTGAA
AATGTGGTGATCGATATTCCTGTAATAGTATGAGTGAGCATTNCNATCAT
TGTCACCTGTCGAGGAACAAAGTCGNCTATGACACAGATTGAGTCATTGA
AAAGCTTTG
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