EY659142

Overview
NameEY659142
Unique NameEY659142
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length926
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659142_ssr612 microsatellite EY659142_ssr612:612..623. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7713 contig Csv1_Contig7713:450..1376. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY659142 vs. ExPASy Swiss-Prot
Match: E139_ARATH (Glucan endo-1,3-beta-glucosidase 9 OS=Arabidopsis thaliana GN=At5g58480 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 5.000e-26
Identity = 66/192 (34.38%), Postives = 104/192 (54.17%), Query Frame = 3 
Query:   12 QNAINAAGLGNQIKVSTAIETGA-LGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLLNLYPYFAIAGNRQISLDYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGGGSLGIVISESGWPTAGGDGALTNVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFAMFDENGK--TGPEIERHWGLF 578
            QNA+  A L N++KV       + L ES  PS G F+ D    +  L+ FL ++ SP  + + P+ +   N+ ISLD++LF+       DG  +YR+ FD   D + +AL   G   + IV+S+ GWPT G + A +    A  +   LI H+++ +   P  P+ETYI ++ DE+ +  +    ERHWG+F
Sbjct:  144 QNALVKANLANEVKVVVPSSFDSFLSESGRPSSGHFRADLNKTMIELLSFLTKHHSPFFVTISPFLSFHQNKNISLDFSLFKETAKAHKDGRKTYRNSFDLSYDTLVSALFTIGFSEVDIVVSKIGWPTDGAENATSL--TAEAFFKGLIVHLEKKTASLPRPPVETYIESLLDEDQRNLSAGNFERHWGVF 333
The following BLAST results are available for this feature:
BLAST of EY659142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
E139_ARATH5.000e-2634.38Glucan endo-1,3-beta-glucosidase 9 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-001-H02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659142 ID=EY659142; Name=EY659142; organism=Citrus sinensis; type=EST; length=926bp
CCACGCGTCCGCAAAACGCCATCAACGCAGCCGGCCTTGGAAACCAAATC
AAGGTTTCCACTGCCATCGAAACTGGAGCTCTTGGCGAATCTTTCCCTCC
GTCAAGAGGCTCATTTAAACAAGATTACAGACCCATTCTTGATCCCCTCA
TTCGTTTCCTCAACGAAAACAGATCCCCCTTGCTTCTCAACCTGTACCCT
TACTTCGCAATTGCTGGTAACCGCCAAATATCTCTGGATTATGCACTATT
TAGGTCACAACAGACGGTCGTTTCCGACGGATCGTTAAGTTACCGAAGTC
TTTTTGACGCCATCTTGGATGCTGTTTACGCCGCGCTGGAGAAAACCGGC
GGGGGGTCGCTGGGCATCGTGATATCAGAGAGTGGGTGGCCGACGGCTGG
TGGTGACGGAGCGTTGACGAATGTTGATAATGCAAGGACTTATAATAATA
ACTTGATACAACATGTGAAGCGAGGGTCACCAAAGAGGCCTGGAAGGCCT
ATTGAGACTTACATCTTTGCTATGTTTGATGAGAATGGCAAAACGGGACC
TGAGATTGAGAGGCATTGGGGACTTTTTGCTCAACTAGGCAGCCTAGATA
CCAGATTAATTTTAATTAATTAACCAAGCTAAAGCAGCTGCATGCACCAA
CAGGATTCGAGGTAATATTTATAATGGAATAANTTCTACCATATGTACTA
GTGGATAAGAAGTTGGATCACCACCTTGTATGGGTGCATGAGGGCAAANT
TCGTGAACAATAATAATGTCAATGGNTACGGNTTTGCAAAGCTTAATTAT
ATACTACGNTCGATCCTCTTTGTGTACACGTGTAAGAACATTTAAAGGAT
GATTGATGTTGAATACAATTTATCTACAGGCTTAAATTAAACTAATGGGT
ATTCTATGAAACAAACTGATTGATTT
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