EY659140

Overview
NameEY659140
Unique NameEY659140
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1881 contig Csv1_Contig1881:32..854. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_SYNJB (50S ribosomal protein L28 OS=Synechococcus sp. GN=rpmB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.224e-17
Identity = 43/78 (55.13%), Postives = 60/78 (76.92%), Query Frame = 2
Query:  266 VARRVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK 499
            +ARR C  T KK N A  +S S+ +T + Q VNLQ+K++WWE GKR+V+LRLSTKALKT++  G+ A+A++AGIDL +
Sbjct:    1 MARR-CQLTNKKRNNAFAISHSHRRTKRLQEVNLQWKRIWWEEGKRFVRLRLSTKALKTLKAKGIGAMAREAGIDLNQ 77          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_SYNJA (50S ribosomal protein L28 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rpmB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.224e-17
Identity = 43/78 (55.13%), Postives = 60/78 (76.92%), Query Frame = 2
Query:  266 VARRVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK 499
            +ARR C  T KK N A  +S S+ +T + Q VNLQ+K++WWE GKR+V+LRLSTKALKT++  G+ A+A++AGIDL +
Sbjct:    1 MARR-CQLTNKKRNNAFAISHSHRRTKRLQEVNLQWKRIWWEEGKRFVRLRLSTKALKTLKAKGIGAMAREAGIDLNQ 77          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_MICAN (50S ribosomal protein L28 OS=Microcystis aeruginosa (strain NIES-843) GN=rpmB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.599e-17
Identity = 42/73 (57.53%), Postives = 54/73 (73.97%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDL 493
            RVC  TGKK+N A  VS S+ +T K Q  NLQ+K+VWW  G R+VKLR+STKA+KTIEK GL   A++ G++L
Sbjct:    3 RVCTMTGKKANNAYAVSHSHRRTKKLQEANLQWKRVWWSEGNRWVKLRISTKAIKTIEKKGLAVFAREVGLNL 75          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_ANASP (50S ribosomal protein L28 OS=Anabaena sp. (strain PCC 7120) GN=rpmB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.088e-17
Identity = 43/73 (58.90%), Postives = 57/73 (78.08%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDL 493
            R C  TGKK+N A  VS S+ +T + Q VNLQ K+VWW +G R+VKL+LSTKA+KT+E  GL+A+AK+AGI+L
Sbjct:    3 RRCDLTGKKANNAFAVSHSHRRTKRLQQVNLQNKRVWWPSGNRWVKLKLSTKAIKTLEVKGLEAMAKEAGINL 75          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_SYNY3 (50S ribosomal protein L28 OS=Synechocystis sp. (strain PCC 6803) GN=rpmB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.652e-17
Identity = 43/78 (55.13%), Postives = 58/78 (74.36%), Query Frame = 2
Query:  266 VARRVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK 499
            +ARR C  TGKK+N    VS S+ +T K Q  NLQ+K+VWW  G R+V+LRLST A+KT+E  G++A+AK+AGI+L K
Sbjct:    1 MARR-CQLTGKKANNGFAVSHSHRRTKKLQQANLQWKRVWWPEGNRFVRLRLSTTAIKTLESKGINAMAKEAGINLNK 77          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_ACAM1 (50S ribosomal protein L28 OS=Acaryochloris marina (strain MBIC 11017) GN=rpmB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.652e-17
Identity = 43/73 (58.90%), Postives = 55/73 (75.34%), Query Frame = 2
Query:  281 CPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK 499
            C  TGKK+N A  VS S+ +T K Q  NLQ+K+VWW   KR+VKLRLSTKA+KT+EK GL A A++AGI+L +
Sbjct:    5 CQLTGKKANNAFAVSHSHRRTHKLQEANLQWKRVWWPQEKRWVKLRLSTKAIKTLEKKGLAAFAREAGINLNQ 77          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_ANAVT (50S ribosomal protein L28 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rpmB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.075e-17
Identity = 42/73 (57.53%), Postives = 56/73 (76.71%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDL 493
            R C  TGKK+N A  VS S+ +T + Q  NLQ K+VWW +G R+VKL+LSTKA+KT+E  GL+A+AK+AGI+L
Sbjct:    3 RRCDLTGKKANNAFAVSHSHRRTKRLQQANLQSKRVWWPSGNRWVKLKLSTKAIKTLEVKGLEAMAKEAGINL 75          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_PROMP (50S ribosomal protein L28 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rpmB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.015e-16
Identity = 40/75 (53.33%), Postives = 55/75 (73.33%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK 499
            RVC  TG K+N    VS S+ +T K Q VNLQ +++WW+ GK++V +++STKALK+I+K GLD VAK  G+DL K
Sbjct:    3 RVCELTGAKANNGMAVSHSHIRTKKLQQVNLQKRRLWWQEGKKWVNIKISTKALKSIQKVGLDKVAKTNGVDLNK 77          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_PROM9 (50S ribosomal protein L28 OS=Prochlorococcus marinus (strain MIT 9312) GN=rpmB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.015e-16
Identity = 39/75 (52.00%), Postives = 55/75 (73.33%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK 499
            RVC  TG K+N    VS S+ +T K Q VNLQ +++WWE GK++V +++STKALK+++K GLD  AK  G+DL+K
Sbjct:    3 RVCELTGAKANNGMAVSHSHIRTKKLQQVNLQKRRLWWEEGKKWVNIKISTKALKSVQKVGLDKFAKSNGVDLKK 77          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_PROM2 (50S ribosomal protein L28 OS=Prochlorococcus marinus (strain MIT 9215) GN=rpmB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.015e-16
Identity = 40/75 (53.33%), Postives = 55/75 (73.33%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK 499
            RVC  TG K+N    VS S+ +T K Q VNLQ +++WWE GK++V +++STKALK+I+K GLD  AK  G+DL+K
Sbjct:    3 RVCELTGAKANNGMAVSHSHIRTKKLQQVNLQKRRLWWEEGKKWVNIKISTKALKSIQKVGLDKFAKSNGVDLQK 77          
The following BLAST results are available for this feature:
BLAST of EY659140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RL28_SYNJB1.224e-1755.1350S ribosomal protein L28 OS=Synechococcus sp. GN=... [more]
RL28_SYNJA1.224e-1755.1350S ribosomal protein L28 OS=Synechococcus sp. (st... [more]
RL28_MICAN1.599e-1757.5350S ribosomal protein L28 OS=Microcystis aeruginos... [more]
RL28_ANASP2.088e-1758.9050S ribosomal protein L28 OS=Anabaena sp. (strain ... [more]
RL28_SYNY34.652e-1755.1350S ribosomal protein L28 OS=Synechocystis sp. (st... [more]
RL28_ACAM14.652e-1758.9050S ribosomal protein L28 OS=Acaryochloris marina ... [more]
RL28_ANAVT6.075e-1757.5350S ribosomal protein L28 OS=Anabaena variabilis (... [more]
RL28_PROMP3.015e-1653.3350S ribosomal protein L28 OS=Prochlorococcus marin... [more]
RL28_PROM93.015e-1652.0050S ribosomal protein L28 OS=Prochlorococcus marin... [more]
RL28_PROM23.015e-1653.3350S ribosomal protein L28 OS=Prochlorococcus marin... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-001-G12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659140 ID=EY659140; Name=EY659140; organism=Citrus sinensis; type=EST; length=823bp
CCACGCGTCCGATAACAAAATACACAGGGAATCGAAAAGAATGGCAACAA
TGGCGACACCGGGAGGAGTTTTATTGGGAAACACTTCCAATCTACCCTTT
CGCCGCCCACGTCTGTCTCCGAAGTCCATGGTTAAGGCAGTCTCCTCCTC
GGAAGAACTGGGTTTCGTTACTTCACAACTCAGTGGCATCAAAATTTCGT
ACAGCCTACCTGACGTGGCCACACCCATTTCCTCTCGTCCTTTCGCCCCG
GGTCTTCAACCTATTGTTGCGCGTAGAGTGTGCCCCTTCACTGGAAAGAA
ATCAAACAAGGCAAACAAAGTTTCCTTCTCTAACCACAAGACAACTAAGC
GGCAGTTTGTTAACCTACAGTATAAGAAGGTTTGGTGGGAGGCCGGCAAG
CGTTATGTGAAGCTGCGTTTGTCAACAAAGGCATTAAAGACGATAGAGAA
AAATGGATTGGATGCTGTTGCTAAGAAGGCTGGAATAGATCTTCGCAAGG
AATGATATAGATGGTCTAACTATTTTTACCTATAGCTGTTGGTAAAGCTT
GTATGCTTACTGTTTCTCTCGAAATTTAATTTCATGTTGCACTGTATCTT
CTTTTTGCTTGTTCTGTTGAATTCTTTGTTCTGTTGAATTCTTCCCAATT
AAATGAGAATACTGATCATTAAAGCCTCAAGGTTTTTGTTAGTTCATTTT
TGCATGTCGTCATGAGGCTTTGCGTTGATGGCTCTATGAGCATTCAGCGC
GTGTTGTATGATCTTCTATNCGAAGAAGAGAATTGTAAATACAGAACAGC
ATTTTTGCTGAAAAAAAAAAAAA
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