EY659140

Overview
NameEY659140
Unique NameEY659140
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1881 contig Csv1_Contig1881:32..854. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_SYNS3 (50S ribosomal protein L28 OS=Synechococcus sp. (strain CC9311) GN=rpmB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.267e-14
Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK 499
            RVC  TG ++N    VS S+ +T K Q  NLQ +++WW  GKR++ LR++T+ALKTI+K GL A A+  GI+L K
Sbjct:    3 RVCQLTGTRANNGMAVSHSHIRTKKLQQANLQQRRLWWAEGKRWINLRITTRALKTIQKKGLGAYARSLGINLAK 77          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_SYNS9 (50S ribosomal protein L28 OS=Synechococcus sp. (strain CC9902) GN=rpmB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.822e-14
Identity = 37/75 (49.33%), Postives = 51/75 (68.00%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK 499
            RVC  TG ++N    VS S+ +T K Q  NLQ +++WW  G R++KLR++T+ALKTI+K GL   AK  GI+L K
Sbjct:    3 RVCQLTGTRANNGMAVSHSHIRTKKLQQANLQQRRLWWAEGNRWIKLRVTTRALKTIQKKGLGPYAKSLGINLAK 77          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_SYNPX (50S ribosomal protein L28 OS=Synechococcus sp. (strain WH8102) GN=rpmB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.822e-14
Identity = 38/75 (50.67%), Postives = 51/75 (68.00%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK 499
            RVC  TG ++N    VS S+ +T K Q  NLQ +++WW  GKR+V LR++T+ALKTI+K GL   AK  GI+L K
Sbjct:    3 RVCQLTGTRANNGMAVSHSHIRTKKLQQANLQNRRLWWAEGKRWVNLRVTTRALKTIQKKGLGPYAKSLGINLAK 77          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_GLOVI (50S ribosomal protein L28 OS=Gloeobacter violaceus GN=rpmB PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.814e-14
Identity = 37/75 (49.33%), Postives = 53/75 (70.67%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK 499
            R C  TGKK+N A  VSFS+ +  + Q  NLQ+K++W +    +V+L+LSTKA+KT+E   L A+AK+AG+DL K
Sbjct:    3 RKCMLTGKKANNAYSVSFSHRRNKRLQMANLQWKRIWDDQQGCFVRLKLSTKAIKTLEHRSLHALAKEAGLDLSK 77          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_PROMT (50S ribosomal protein L28 OS=Prochlorococcus marinus (strain NATL2A) GN=rpmB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.401e-13
Identity = 34/75 (45.33%), Postives = 50/75 (66.67%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK 499
            RVC  TG ++N    VS S+ +T K Q  NLQ +++WWE   +++ +R++T+ALKTI+K GL   AK  G+DL K
Sbjct:    3 RVCQLTGTRANNGMSVSHSHIRTKKLQQANLQQRRLWWEEENKWINIRVTTRALKTIQKKGLGKYAKSLGVDLNK 77          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_PROM1 (50S ribosomal protein L28 OS=Prochlorococcus marinus (strain NATL1A) GN=rpmB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.401e-13
Identity = 34/75 (45.33%), Postives = 50/75 (66.67%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK 499
            RVC  TG ++N    VS S+ +T K Q  NLQ +++WWE   +++ +R++T+ALKTI+K GL   AK  G+DL K
Sbjct:    3 RVCQLTGTRANNGMSVSHSHIRTKKLQQANLQQRRLWWEEENKWINIRVTTRALKTIQKKGLGKYAKSLGVDLNK 77          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_THIDA (50S ribosomal protein L28 OS=Thiobacillus denitrificans (strain ATCC 25259) GN=rpmB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.450e-12
Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAV 469
            RVC  TGKK    N VS +N+KT +R   NLQY++ W E+  R+V+LRLS  AL+TI+KNG+++V
Sbjct:    3 RVCVVTGKKPMVGNNVSHANNKTKRRFLPNLQYRRFWVESENRWVRLRLSNAALRTIDKNGIESV 67          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_VEREI (50S ribosomal protein L28 OS=Verminephrobacter eiseniae (strain EF01-2) GN=rpmB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.506e-12
Identity = 34/65 (52.31%), Postives = 46/65 (70.77%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAV 469
            RVC  TGKK    N VS +N+KT +R   NLQY++ W E   R+V+LR+S+ AL+ I+KNG+DAV
Sbjct:    3 RVCDVTGKKPMVGNNVSHANNKTRRRFLPNLQYRRFWVETENRWVRLRVSSAALRLIDKNGIDAV 67          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RK28_GALSU (50S ribosomal protein L28, chloroplastic OS=Galdieria sulphuraria GN=rpl28 PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.885e-12
Identity = 34/63 (53.97%), Postives = 43/63 (68.25%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLD 463
            R C    K SN ANKVS SNHK+ + QFVNLQ KKVW    K+++KLR+STK +K + K  +D
Sbjct:    3 RKCQLLFKTSNTANKVSHSNHKSKRLQFVNLQKKKVWSSLKKKWIKLRISTKMIKILNKKNID 65          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_DIAST (50S ribosomal protein L28 OS=Diaphorobacter sp. (strain TPSY) GN=rpmB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.685e-12
Identity = 33/65 (50.77%), Postives = 47/65 (72.31%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAV 469
            RVC  TGKK    N VS +N+KT +R   NLQY++ W E+  R+V+LR+S+ AL+ I+KNG+D+V
Sbjct:    3 RVCEVTGKKPMVGNNVSHANNKTKRRFLPNLQYRRFWVESENRWVRLRVSSAALRLIDKNGIDSV 67          
The following BLAST results are available for this feature:
BLAST of EY659140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RL28_SYNS31.267e-1449.3350S ribosomal protein L28 OS=Synechococcus sp. (st... [more]
RL28_SYNS92.822e-1449.3350S ribosomal protein L28 OS=Synechococcus sp. (st... [more]
RL28_SYNPX2.822e-1450.6750S ribosomal protein L28 OS=Synechococcus sp. (st... [more]
RL28_GLOVI4.814e-1449.3350S ribosomal protein L28 OS=Gloeobacter violaceus... [more]
RL28_PROMT1.401e-1345.3350S ribosomal protein L28 OS=Prochlorococcus marin... [more]
RL28_PROM11.401e-1345.3350S ribosomal protein L28 OS=Prochlorococcus marin... [more]
RL28_THIDA3.450e-1252.3150S ribosomal protein L28 OS=Thiobacillus denitrif... [more]
RL28_VEREI4.506e-1252.3150S ribosomal protein L28 OS=Verminephrobacter eis... [more]
RK28_GALSU5.885e-1253.9750S ribosomal protein L28, chloroplastic OS=Galdie... [more]
RL28_DIAST7.685e-1250.7750S ribosomal protein L28 OS=Diaphorobacter sp. (s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-001-G12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659140 ID=EY659140; Name=EY659140; organism=Citrus sinensis; type=EST; length=823bp
CCACGCGTCCGATAACAAAATACACAGGGAATCGAAAAGAATGGCAACAA
TGGCGACACCGGGAGGAGTTTTATTGGGAAACACTTCCAATCTACCCTTT
CGCCGCCCACGTCTGTCTCCGAAGTCCATGGTTAAGGCAGTCTCCTCCTC
GGAAGAACTGGGTTTCGTTACTTCACAACTCAGTGGCATCAAAATTTCGT
ACAGCCTACCTGACGTGGCCACACCCATTTCCTCTCGTCCTTTCGCCCCG
GGTCTTCAACCTATTGTTGCGCGTAGAGTGTGCCCCTTCACTGGAAAGAA
ATCAAACAAGGCAAACAAAGTTTCCTTCTCTAACCACAAGACAACTAAGC
GGCAGTTTGTTAACCTACAGTATAAGAAGGTTTGGTGGGAGGCCGGCAAG
CGTTATGTGAAGCTGCGTTTGTCAACAAAGGCATTAAAGACGATAGAGAA
AAATGGATTGGATGCTGTTGCTAAGAAGGCTGGAATAGATCTTCGCAAGG
AATGATATAGATGGTCTAACTATTTTTACCTATAGCTGTTGGTAAAGCTT
GTATGCTTACTGTTTCTCTCGAAATTTAATTTCATGTTGCACTGTATCTT
CTTTTTGCTTGTTCTGTTGAATTCTTTGTTCTGTTGAATTCTTCCCAATT
AAATGAGAATACTGATCATTAAAGCCTCAAGGTTTTTGTTAGTTCATTTT
TGCATGTCGTCATGAGGCTTTGCGTTGATGGCTCTATGAGCATTCAGCGC
GTGTTGTATGATCTTCTATNCGAAGAAGAGAATTGTAAATACAGAACAGC
ATTTTTGCTGAAAAAAAAAAAAA
back to top