EY659140

Overview
NameEY659140
Unique NameEY659140
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_DELAS (50S ribosomal protein L28 OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=rpmB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.685e-12
Identity = 33/65 (50.77%), Postives = 47/65 (72.31%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAV 469
            RVC  TGKK    N VS +N+KT +R   NLQY++ W E+  R+V+LR+S+ AL+ I+KNG+D+V
Sbjct:    3 RVCEVTGKKPMVGNNVSHANNKTKRRFLPNLQYRRFWVESENRWVRLRVSSAALRLIDKNGIDSV 67          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_ACISJ (50S ribosomal protein L28 OS=Acidovorax sp. (strain JS42) GN=rpmB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.685e-12
Identity = 33/65 (50.77%), Postives = 47/65 (72.31%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAV 469
            RVC  TGKK    N VS +N+KT +R   NLQY++ W E+  R+V+LR+S+ AL+ I+KNG+D+V
Sbjct:    3 RVCEVTGKKPMVGNNVSHANNKTKRRFLPNLQYRRFWVESENRWVRLRVSSAALRLIDKNGIDSV 67          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_ACIAC (50S ribosomal protein L28 OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=rpmB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.685e-12
Identity = 33/65 (50.77%), Postives = 47/65 (72.31%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAV 469
            RVC  TGKK    N VS +N+KT +R   NLQY++ W E+  R+V+LR+S+ AL+ I+KNG+D+V
Sbjct:    3 RVCDVTGKKPMVGNNVSHANNKTKRRFLPNLQYRRFWVESENRWVRLRVSSAALRLIDKNGIDSV 67          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_NITMU (50S ribosomal protein L28 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=rpmB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.311e-11
Identity = 33/65 (50.77%), Postives = 47/65 (72.31%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAV 469
            RVC  TGKK    + VS +N+KT +R   NLQ ++ W E+ +R++ LRLS +AL+TI+KNG+DAV
Sbjct:    3 RVCEVTGKKPMTGHHVSHANNKTKRRFLPNLQRRRFWVESERRWISLRLSNEALRTIDKNGIDAV 67          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_METFK (50S ribosomal protein L28 OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=rpmB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.311e-11
Identity = 34/65 (52.31%), Postives = 45/65 (69.23%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAV 469
            RVC  TGKK    N VS +N+KT +R   NLQ +K W E+  R+V LR++  AL+TI+KNG+DAV
Sbjct:    3 RVCQVTGKKPMVGNNVSHANNKTKRRFLPNLQNRKFWVESENRWVSLRITNAALRTIDKNGIDAV 67          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_CHRVO (50S ribosomal protein L28 OS=Chromobacterium violaceum GN=rpmB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.236e-11
Identity = 33/65 (50.77%), Postives = 45/65 (69.23%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAV 469
            RVC  TGK+    N VS +N+KT +R   NLQY+K W E+  R+V+LR+S  AL+TI+K G+D V
Sbjct:    3 RVCKVTGKRPMTGNNVSHANNKTKRRFLPNLQYRKFWVESENRWVRLRVSNAALRTIDKVGIDVV 67          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_VARPS (50S ribosomal protein L28 OS=Variovorax paradoxus (strain S110) GN=rpmB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.920e-11
Identity = 33/65 (50.77%), Postives = 45/65 (69.23%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAV 469
            RVC  TGK     N VS +N+KT +R   NLQY++ W E   R+V+LR+S+ AL+ I+KNG+DAV
Sbjct:    3 RVCDVTGKGPMVGNNVSHANNKTKRRFLPNLQYRRFWVETENRWVRLRVSSAALRLIDKNGIDAV 67          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_POLNA (50S ribosomal protein L28 OS=Polaromonas naphthalenivorans (strain CJ2) GN=rpmB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.920e-11
Identity = 34/74 (45.95%), Postives = 49/74 (66.22%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLR 496
            RVC  TGK     N VS +N+KT +R   NLQY+++W E+  R+V+LR++   L+ I+KNG+DAV     +DLR
Sbjct:    3 RVCQVTGKGPMVGNNVSHANNKTKRRFMPNLQYRRIWVESENRWVRLRITAAGLRLIDKNGIDAVL----VDLR 72          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_LARHH (50S ribosomal protein L28 OS=Laribacter hongkongensis (strain HLHK9) GN=rpmB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.814e-11
Identity = 32/65 (49.23%), Postives = 46/65 (70.77%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAV 469
            RVC  TGK+    N VS +N+KT +R   NLQY++ W E+  R+V++R+S  AL+TI+K G+DAV
Sbjct:    3 RVCKVTGKRPMVGNNVSHANNKTKRRFLPNLQYRRFWVESENRWVRMRVSNAALRTIDKVGIDAV 67          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_ACIF5 (50S ribosomal protein L28 OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=rpmB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.814e-11
Identity = 31/65 (47.69%), Postives = 45/65 (69.23%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAV 469
            RVC  TGKK    N VS +++KT +R   NLQY + W E+  R+V++R+STK ++TI+K G+D V
Sbjct:    3 RVCKVTGKKPMAGNNVSHAHNKTRRRFLPNLQYHRFWVESENRWVRMRVSTKGIRTIDKKGIDVV 67          
The following BLAST results are available for this feature:
BLAST of EY659140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RL28_DELAS7.685e-1250.7750S ribosomal protein L28 OS=Delftia acidovorans (... [more]
RL28_ACISJ7.685e-1250.7750S ribosomal protein L28 OS=Acidovorax sp. (strai... [more]
RL28_ACIAC7.685e-1250.7750S ribosomal protein L28 OS=Acidovorax avenae sub... [more]
RL28_NITMU1.311e-1150.7750S ribosomal protein L28 OS=Nitrosospira multifor... [more]
RL28_METFK1.311e-1152.3150S ribosomal protein L28 OS=Methylobacillus flage... [more]
RL28_CHRVO2.236e-1150.7750S ribosomal protein L28 OS=Chromobacterium viola... [more]
RL28_VARPS2.920e-1150.7750S ribosomal protein L28 OS=Variovorax paradoxus ... [more]
RL28_POLNA2.920e-1145.9550S ribosomal protein L28 OS=Polaromonas naphthale... [more]
RL28_LARHH3.814e-1149.2350S ribosomal protein L28 OS=Laribacter hongkongen... [more]
RL28_ACIF53.814e-1147.6950S ribosomal protein L28 OS=Acidithiobacillus fer... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-001-G12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659140 ID=EY659140; Name=EY659140; organism=Citrus sinensis; type=EST; length=823bp
CCACGCGTCCGATAACAAAATACACAGGGAATCGAAAAGAATGGCAACAA
TGGCGACACCGGGAGGAGTTTTATTGGGAAACACTTCCAATCTACCCTTT
CGCCGCCCACGTCTGTCTCCGAAGTCCATGGTTAAGGCAGTCTCCTCCTC
GGAAGAACTGGGTTTCGTTACTTCACAACTCAGTGGCATCAAAATTTCGT
ACAGCCTACCTGACGTGGCCACACCCATTTCCTCTCGTCCTTTCGCCCCG
GGTCTTCAACCTATTGTTGCGCGTAGAGTGTGCCCCTTCACTGGAAAGAA
ATCAAACAAGGCAAACAAAGTTTCCTTCTCTAACCACAAGACAACTAAGC
GGCAGTTTGTTAACCTACAGTATAAGAAGGTTTGGTGGGAGGCCGGCAAG
CGTTATGTGAAGCTGCGTTTGTCAACAAAGGCATTAAAGACGATAGAGAA
AAATGGATTGGATGCTGTTGCTAAGAAGGCTGGAATAGATCTTCGCAAGG
AATGATATAGATGGTCTAACTATTTTTACCTATAGCTGTTGGTAAAGCTT
GTATGCTTACTGTTTCTCTCGAAATTTAATTTCATGTTGCACTGTATCTT
CTTTTTGCTTGTTCTGTTGAATTCTTTGTTCTGTTGAATTCTTCCCAATT
AAATGAGAATACTGATCATTAAAGCCTCAAGGTTTTTGTTAGTTCATTTT
TGCATGTCGTCATGAGGCTTTGCGTTGATGGCTCTATGAGCATTCAGCGC
GTGTTGTATGATCTTCTATNCGAAGAAGAGAATTGTAAATACAGAACAGC
ATTTTTGCTGAAAAAAAAAAAAA
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