EY659140

Overview
NameEY659140
Unique NameEY659140
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1881 contig Csv1_Contig1881:32..854. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_ACIF2 (50S ribosomal protein L28 OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=rpmB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.814e-11
Identity = 31/65 (47.69%), Postives = 45/65 (69.23%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAV 469
            RVC  TGKK    N VS +++KT +R   NLQY + W E+  R+V++R+STK ++TI+K G+D V
Sbjct:    3 RVCKVTGKKPMAGNNVSHAHNKTRRRFLPNLQYHRFWVESENRWVRMRVSTKGIRTIDKKGIDVV 67          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_BORPE (50S ribosomal protein L28 OS=Bordetella pertussis GN=rpmB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.982e-11
Identity = 32/65 (49.23%), Postives = 46/65 (70.77%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAV 469
            RVC  TGK     N VS +N+KT +R   NLQ ++ W E+  R+V+LR++ KA++TI+KNG+DAV
Sbjct:    3 RVCQVTGKGPMVGNNVSHANNKTKRRFLPNLQSRRFWVESENRWVRLRVTAKAIRTIDKNGIDAV 67          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_BORPA (50S ribosomal protein L28 OS=Bordetella parapertussis GN=rpmB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.982e-11
Identity = 32/65 (49.23%), Postives = 46/65 (70.77%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAV 469
            RVC  TGK     N VS +N+KT +R   NLQ ++ W E+  R+V+LR++ KA++TI+KNG+DAV
Sbjct:    3 RVCQVTGKGPMVGNNVSHANNKTKRRFLPNLQSRRFWVESENRWVRLRVTAKAIRTIDKNGIDAV 67          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_BORBR (50S ribosomal protein L28 OS=Bordetella bronchiseptica GN=rpmB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.982e-11
Identity = 32/65 (49.23%), Postives = 46/65 (70.77%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAV 469
            RVC  TGK     N VS +N+KT +R   NLQ ++ W E+  R+V+LR++ KA++TI+KNG+DAV
Sbjct:    3 RVCQVTGKGPMVGNNVSHANNKTKRRFLPNLQSRRFWVESENRWVRLRVTAKAIRTIDKNGIDAV 67          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_BORA1 (50S ribosomal protein L28 OS=Bordetella avium (strain 197N) GN=rpmB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.982e-11
Identity = 32/65 (49.23%), Postives = 46/65 (70.77%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAV 469
            RVC  TGK     N VS +N+KT +R   NLQ ++ W E+  R+V+LR++ KA++TI+KNG+DAV
Sbjct:    3 RVCQVTGKGPMVGNNVSHANNKTKRRFLPNLQSRRFWVESENRWVRLRVTAKAIRTIDKNGIDAV 67          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_DECAR (50S ribosomal protein L28 OS=Dechloromonas aromatica (strain RCB) GN=rpmB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.506e-11
Identity = 31/65 (47.69%), Postives = 45/65 (69.23%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAV 469
            RVC  TGK     NKVS +N++T +R   NLQY++ W E+  R+++LR+S   L+ I+KNG+DAV
Sbjct:    3 RVCQVTGKAPMVGNKVSHANNRTKRRFLPNLQYRRFWVESENRFLRLRVSNAGLRLIDKNGIDAV 67          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_PSEPK (50S ribosomal protein L28 OS=Pseudomonas putida (strain KT2440) GN=rpmB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.497e-11
Identity = 33/75 (44.00%), Postives = 49/75 (65.33%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK 499
            RVC  TGK     N +S +N+KT +R   NLQ+ + W E+ KR+V+LR+S K ++ I+K G+DAV     +D+RK
Sbjct:    3 RVCQVTGKGPVTGNNISHANNKTRRRFLPNLQHHRFWVESEKRFVRLRVSAKGMRIIDKRGIDAVL----VDIRK 73          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_PSEPG (50S ribosomal protein L28 OS=Pseudomonas putida (strain GB-1) GN=rpmB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.497e-11
Identity = 33/75 (44.00%), Postives = 49/75 (65.33%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK 499
            RVC  TGK     N +S +N+KT +R   NLQ+ + W E+ KR+V+LR+S K ++ I+K G+DAV     +D+RK
Sbjct:    3 RVCQVTGKGPVTGNNISHANNKTRRRFLPNLQHHRFWVESEKRFVRLRVSAKGMRIIDKRGIDAVL----VDIRK 73          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_PSEP1 (50S ribosomal protein L28 OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=rpmB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.497e-11
Identity = 33/75 (44.00%), Postives = 49/75 (65.33%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK 499
            RVC  TGK     N +S +N+KT +R   NLQ+ + W E+ KR+V+LR+S K ++ I+K G+DAV     +D+RK
Sbjct:    3 RVCQVTGKGPVTGNNISHANNKTRRRFLPNLQHHRFWVESEKRFVRLRVSAKGMRIIDKRGIDAVL----VDIRK 73          
BLAST of EY659140 vs. ExPASy Swiss-Prot
Match: RL28_BORPD (50S ribosomal protein L28 OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=rpmB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.497e-11
Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 2
Query:  275 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAV 469
            RVC  TGK     N VS +N+KT +R   NLQ ++ W E+  R+V+LR+S KA++ I+KNG+DAV
Sbjct:    3 RVCQVTGKGPMTGNNVSHANNKTKRRFLPNLQSRRFWVESENRWVRLRVSAKAIRIIDKNGIDAV 67          
The following BLAST results are available for this feature:
BLAST of EY659140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RL28_ACIF23.814e-1147.6950S ribosomal protein L28 OS=Acidithiobacillus fer... [more]
RL28_BORPE4.982e-1149.2350S ribosomal protein L28 OS=Bordetella pertussis ... [more]
RL28_BORPA4.982e-1149.2350S ribosomal protein L28 OS=Bordetella parapertus... [more]
RL28_BORBR4.982e-1149.2350S ribosomal protein L28 OS=Bordetella bronchisep... [more]
RL28_BORA14.982e-1149.2350S ribosomal protein L28 OS=Bordetella avium (str... [more]
RL28_DECAR6.506e-1147.6950S ribosomal protein L28 OS=Dechloromonas aromati... [more]
RL28_PSEPK8.497e-1144.0050S ribosomal protein L28 OS=Pseudomonas putida (s... [more]
RL28_PSEPG8.497e-1144.0050S ribosomal protein L28 OS=Pseudomonas putida (s... [more]
RL28_PSEP18.497e-1144.0050S ribosomal protein L28 OS=Pseudomonas putida (s... [more]
RL28_BORPD8.497e-1149.2350S ribosomal protein L28 OS=Bordetella petrii (st... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-001-G12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659140 ID=EY659140; Name=EY659140; organism=Citrus sinensis; type=EST; length=823bp
CCACGCGTCCGATAACAAAATACACAGGGAATCGAAAAGAATGGCAACAA
TGGCGACACCGGGAGGAGTTTTATTGGGAAACACTTCCAATCTACCCTTT
CGCCGCCCACGTCTGTCTCCGAAGTCCATGGTTAAGGCAGTCTCCTCCTC
GGAAGAACTGGGTTTCGTTACTTCACAACTCAGTGGCATCAAAATTTCGT
ACAGCCTACCTGACGTGGCCACACCCATTTCCTCTCGTCCTTTCGCCCCG
GGTCTTCAACCTATTGTTGCGCGTAGAGTGTGCCCCTTCACTGGAAAGAA
ATCAAACAAGGCAAACAAAGTTTCCTTCTCTAACCACAAGACAACTAAGC
GGCAGTTTGTTAACCTACAGTATAAGAAGGTTTGGTGGGAGGCCGGCAAG
CGTTATGTGAAGCTGCGTTTGTCAACAAAGGCATTAAAGACGATAGAGAA
AAATGGATTGGATGCTGTTGCTAAGAAGGCTGGAATAGATCTTCGCAAGG
AATGATATAGATGGTCTAACTATTTTTACCTATAGCTGTTGGTAAAGCTT
GTATGCTTACTGTTTCTCTCGAAATTTAATTTCATGTTGCACTGTATCTT
CTTTTTGCTTGTTCTGTTGAATTCTTTGTTCTGTTGAATTCTTCCCAATT
AAATGAGAATACTGATCATTAAAGCCTCAAGGTTTTTGTTAGTTCATTTT
TGCATGTCGTCATGAGGCTTTGCGTTGATGGCTCTATGAGCATTCAGCGC
GTGTTGTATGATCTTCTATNCGAAGAAGAGAATTGTAAATACAGAACAGC
ATTTTTGCTGAAAAAAAAAAAAA
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