EY659111

Overview
NameEY659111
Unique NameEY659111
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659111_ssr76 microsatellite EY659111_ssr76:76..87. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY659111 vs. ExPASy Swiss-Prot
Match: XTH29_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 29 OS=Arabidopsis thaliana GN=XTH29 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 6.762e-41
Identity = 87/224 (38.84%), Postives = 131/224 (58.48%), Query Frame = 1
Query:   25 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRD--ELDFEFLGNRTGQPYTVQTNIYANGKGDR--EQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIR--VYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPVPGPANCASNPGNWWEANNLS 678
            F E     + + +L +    R+++L+LD+ +G GF S   Y  G  S  IKL    +AG V AFY ++    V+D  ELD EFLGN  G+P+  QTN+Y NG  +R  E+R  LWFDP+ ++H Y+ILW    I+F+VDDVPIR  + K      +P  +PM +Y+T+W+A  WAT GG   +D++ +PF + ++D  ++GC V       +N  N    NN++
Sbjct:   40 FDEGLSHLFGEGNLIRSPDDRSVRLLLDKYTGSGFISSSMYQHGFFSSLIKLPGAYTAGIVVAFYTSNGDVFVKDHDELDIEFLGNLEGKPWRFQTNMYGNGSTNRGREERYRLWFDPSKEFHRYSILWTPTKIIFWVDDVPIREILRKEEMNGDYP-QKPMSLYATIWDASSWATSGGKFGVDYTFSPFVSEFKDIALDGCNVSDSFPGENNNNNIGNYNNIN 262          

HSP 2 Score: 27.7202 bits (60), Expect = 6.762e-41
Identity = 10/17 (58.82%), Postives = 11/17 (64.71%), Query Frame = 3
Query:  726 HMIYDYCTDKXRYPVPP 776
            +M Y YC D  RY VPP
Sbjct:  293 YMYYSYCYDTIRYSVPP 309          
BLAST of EY659111 vs. ExPASy Swiss-Prot
Match: XTH11_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 11 OS=Arabidopsis thaliana GN=XTH11 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.288e-34
Identity = 83/222 (37.39%), Postives = 119/222 (53.60%), Query Frame = 1
Query:   22 TFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPVP--GPANCASNPGNWWEANNLSA 681
            T+  ++  TW    L  I     +QL LD+NSG GF S+  Y  G  +++IK     S G +T+FY+ S +    DEL F+ LG + G PY + TN+Y  G+G ++QR  LWFDP  DYH Y+ LWN + +VFYVDD PIRVY  +    +P  Q M +  ++         G +  ID  + P+ A ++   IEGC     G   C ++P  WW    LS+
Sbjct:   23 TWGNNYYQTWGHQAL-VINKTSELQLTLDKNSGSGFESQLIYGSGYFNVRIKAPQTTSTGVITSFYLISRSSR-HDELCFQILG-KNGPPYLLNTNMYLYGEGGKDQRFRLWFDPTKDYHSYSFLWNPNQLVFYVDDTPIRVYSKNPDVYYPSVQTMFLMGSV-------QNGSI--IDPKQMPYIAKFQASKIEGCKTEFMGIDKC-TDPKFWWNRKQLSS 231          

HSP 2 Score: 28.1054 bits (61), Expect = 5.288e-34
Identity = 9/18 (50.00%), Postives = 14/18 (77.78%), Query Frame = 3
Query:  726 HMIYDYCTDKXRYPVPPR 779
            ++ YDYC+D+ RYP  P+
Sbjct:  244 YLDYDYCSDRQRYPKVPQ 261          
BLAST of EY659111 vs. ExPASy Swiss-Prot
Match: CRR1_YEAST (Probable glycosidase CRR1 OS=Saccharomyces cerevisiae GN=CRR1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.269e-13
Identity = 67/208 (32.21%), Postives = 93/208 (44.71%), Query Frame = 1
Query:    1 PRVRRAATFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGD--REQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIR-VYKNSGRAPFPM-----NQPMGVYSTLWEAD---------DWATRGGLEKIDWSKAP 573
            P  + A   LEDF  T S     +   G  +  +  + +G    S R +L+G+ S+++K     S G VTAF +   T  + DE+DFE+LG   G   T Q+N Y+ G  D  R QR  +  D  A YH Y I W+   I++YVD    R V K     P          PM +   +W            +WA  GGL  IDW  +P
Sbjct:  139 PDSKEAEKMLEDFDFTHSGYTSIEASSGNIVLAMPKKTTGSLITSTRSFLYGKASVRMKTAR--SRGVVTAFDL---TSAIGDEIDFEWLG---GDLMTAQSNYYSQGHLDYTRMQRFPVGADTWATYHTYEIDWDPDRIIWYVDGKIARTVLKKDTWDPISKEYRYPQTPMRLEIAVWPGGSETNGPGTINWA--GGL--IDWENSP 334          
BLAST of EY659111 vs. ExPASy Swiss-Prot
Match: GUB_CLOTH (Beta-glucanase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=licB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.403e-12
Identity = 62/216 (28.70%), Postives = 91/216 (42.13%), Query Frame = 1
Query:   37 FKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKR-----QYLFGRVSMKIKLVPGDSAGTVTAF--YMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWE---ADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPVPGPANCASNPGN 654
            F   W  + +     G+ I L LD+  G  +  K      +  FG    ++++    + G V++F  Y   +  N  DE+D EFLG  T +   VQ N Y NG G  E   NL FD + D+H Y   W   +I FYVD    +VY+ +   P     P  +   LW     D+W  R        ++  +  YY +   +  P P P    S P N
Sbjct:   60 FNCVWKPSQVT-FSNGKMI-LTLDREYGGSYPYKSGEYRTKSFFGYGYYEVRMKAAKNVGIVSSFFTYTGPSDNNPWDEIDIEFLGKDTTK---VQFNWYKNGVGGNEYLHNLGFDASQDFHTYGFEWRPDYIDFYVDGK--KVYRGTRNIPV---TPGKIMMNLWPGIGVDEWLGRYDGRTPLQAEYEYVKYYPNGVPQDNPTPTPTIAPSTPTN 265          
BLAST of EY659111 vs. ExPASy Swiss-Prot
Match: GUB_CLOTM (Beta-glucanase OS=Clostridium thermocellum GN=licB PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.457e-11
Identity = 60/216 (27.78%), Postives = 89/216 (41.20%), Query Frame = 1
Query:   37 FKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKR-----QYLFGRVSMKIKLVPGDSAGTVTAF--YMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWE---ADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPVPGPANCASNPGN 654
            F   W  + +     G+ I L LD+  G  +  K      +  FG    ++++    + G V++F  Y   +  N  DE+D EFLG  T +    Q N Y N  G  E   NL FD + D+H Y   W   +I FYVD    +VY+ +   P     P  +   LW     D+W  R        ++  +  YY +   +  P P P    S P N
Sbjct:   60 FNCVWKPSQVT-FSNGKMI-LTLDREYGGSYPYKSGEYRSKSFFGYGYYEVRMKAAKNVGIVSSFFTYTGPSDNNPWDEIDIEFLGKDTTK---AQFNWYKNEVGGNEYLHNLGFDASQDFHTYGFEWRPDYIDFYVDGK--KVYRGTRNIPV---TPGKIMMNLWPGKGVDEWLGRYDGRTPLQAEYEYVKYYPNGVPQDNPTPTPTIAPSTPTN 265          
The following BLAST results are available for this feature:
BLAST of EY659111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
XTH29_ARATH6.762e-4138.84Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH11_ARATH5.288e-3437.39Probable xyloglucan endotransglucosylase/hydrolase... [more]
CRR1_YEAST1.269e-1332.21Probable glycosidase CRR1 OS=Saccharomyces cerevis... [more]
GUB_CLOTH1.403e-1228.70Beta-glucanase OS=Clostridium thermocellum (strain... [more]
GUB_CLOTM3.457e-1127.78Beta-glucanase OS=Clostridium thermocellum GN=licB... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-001-E06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659111 ID=EY659111; Name=EY659111; organism=Citrus sinensis; type=EST; length=916bp
CCACGCGTCCGGCGAGCGGCTACTTTTCTTGAGGATTTTAAAGTCACATG
GTCCGATGCCCATCTCAGGCAAATCGAGGGAGGGAGGGCCATCCAGCTAG
TTCTAGACCAAAATTCAGGATGTGGGTTTGCCTCCAAAAGGCAGTACTTG
TTCGGGCGTGTAAGCATGAAGATCAAGCTCGTTCCTGGAGACTCTGCTGG
AACTGTCACTGCATTTTATATGAATTCCAACACCGAAAATGTGAGAGACG
AGCTTGATTTTGAGTTCCTGGGAAACCGAACGGGTCAGCCTTACACGGTC
CAGACCAATATCTATGCAAATGGAAAAGGCGATAGAGAACAGAGAGTGAA
CCTCTGGTTTGACCCTGCTGCAGATTATCACCTTTACACTATTCTCTGGA
ACCATCACCATATTGTCTTCTATGTGGATGATGTGCCCATCAGGGTTTAC
AAAAACAGTGGAAGGGCTCCATTTCCAATGAACCAACCCATGGGGGTGTA
TTCAACGCTGTGGGAAGCAGATGACTGGGCAACAAGAGGTGGTCTAGAGA
AAATAGATTGGAGCAAAGCTCCTTTTTATGCTTATTACAGAGACTTTGAT
ATTGAGGGCTGCCCAGTTCCTGGACCAGCAAACTGTGCCTCGAACCCAGG
TAACTGGTGGGAGGCAAATAATTTATCAGCCCTCACCGCCATGGAAAGCA
GAAGATACAGATGGGTTCGTCTNCACACATGATCTATGATTATTGCACTG
ATAAATNCAGATACCCAGTACCCCCACGGAATGCCTTTGCNGCATATAAN
TTCACCCCCGCATTANTTAGCAGTTGACGGGACTCATATCGNATCATATC
ATGATATACTTCCGGACACTCCTTTTGATATCCCCATCGGGGGAAAACTT
TCCCCATTTCAGGGAG
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