EY659106

Overview
NameEY659106
Unique NameEY659106
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length940
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659106_ssr391 microsatellite EY659106_ssr391:391..408. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY659106 vs. ExPASy Swiss-Prot
Match: ZFAN6_MOUSE (AN1-type zinc finger protein 6 OS=Mus musculus GN=Zfand6 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.260e-16
Identity = 32/62 (51.61%), Postives = 48/62 (77.42%), Query Frame = 3 
Query:  420 NRCSVCRKRIGLTGFKCRCGTIFCGTHRYPEKHGCSFDFKKLGREEIARANPLIKAEKLEKI 605
            NRC +CRK++GLTGF+CRCG ++CG HRY + H CS+++K    E+I + NP++  EK++KI
Sbjct:  162 NRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 223
[Close]
BLAST of EY659106 vs. ExPASy Swiss-Prot
Match: ZFAN6_HUMAN (AN1-type zinc finger protein 6 OS=Homo sapiens GN=ZFAND6 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.260e-16
Identity = 32/62 (51.61%), Postives = 48/62 (77.42%), Query Frame = 3 
Query:  420 NRCSVCRKRIGLTGFKCRCGTIFCGTHRYPEKHGCSFDFKKLGREEIARANPLIKAEKLEKI 605
            NRC +CRK++GLTGF+CRCG ++CG HRY + H CS+++K    E+I + NP++  EK++KI
Sbjct:  147 NRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 208
[Close]
BLAST of EY659106 vs. ExPASy Swiss-Prot
Match: ZFAN6_BOVIN (AN1-type zinc finger protein 6 OS=Bos taurus GN=ZFAND6 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.260e-16
Identity = 32/62 (51.61%), Postives = 48/62 (77.42%), Query Frame = 3 
Query:  420 NRCSVCRKRIGLTGFKCRCGTIFCGTHRYPEKHGCSFDFKKLGREEIARANPLIKAEKLEKI 605
            NRC +CRK++GLTGF+CRCG ++CG HRY + H CS+++K    E+I + NP++  EK++KI
Sbjct:  147 NRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 208
[Close]
BLAST of EY659106 vs. ExPASy Swiss-Prot
Match: ANUB1_HUMAN (AN1-type zinc finger and ubiquitin domain-containing protein 1 OS=Homo sapiens GN=ANUBL1 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.794e-13
Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 3 
Query:  420 NRCSVCRKRIGL-TGFKCRCGTIFCGTHRYPEKHGCSFDFKKLGREEIARANPLIKAEKLEKI 605
            N C +C K+ GL + ++CRCG  FC +HRY E HGC++D+K  GR  +  ANP++ A KL KI
Sbjct:  665 NHCFLCGKKTGLASSYECRCGNNFCASHRYAETHGCTYDYKSAGRRYLHEANPVVNAPKLPKI 727
The following BLAST results are available for this feature:
BLAST of EY659106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
ZFAN6_MOUSE1.260e-1651.61AN1-type zinc finger protein 6 OS=Mus musculus GN=... [more]
ZFAN6_HUMAN1.260e-1651.61AN1-type zinc finger protein 6 OS=Homo sapiens GN=... [more]
ZFAN6_BOVIN1.260e-1651.61AN1-type zinc finger protein 6 OS=Bos taurus GN=ZF... [more]
ANUB1_HUMAN3.794e-1349.21AN1-type zinc finger and ubiquitin domain-containi... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-001-E01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659106 ID=EY659106; Name=EY659106; organism=Citrus sinensis; type=EST; length=940bp
CCACGCGTCCGCGGACGCGTGGGTTTTTGTGTCAATTTCCTGAAATCCTC
TTTACAGAATAAGGAATTGATCGGTTGGCAAAACTAAGTGGAGCAGGCGA
TCATATGGCGGAGGAGCACAGATTCCAAGCACAAGAAGGGCACAGGCTCT
GCGCAAACAACTGCGGCTTCTTCGGAAGTACGGCGACGATGAATCTCTGT
TCGAAATGCTACCGAGATCACTGTCTCAAGGAGCAACAACAAGCGTCGAT
CAAGACGACGGTTGAGAATTCTCTTTCGGCTTCTCCTCCTTCGTCATCCG
CCCCGTTCCTCGGATCTCTCCCCGATCCTCCAGCTTTGGCCCTGCCGGAA
GTGAACGGAGATAAGGATGCCGACGTGGCTGTGGTCGTCGAGCAGCAGCA
GCAGCAGCCACCGCAGCCGAATCGGTGTTCGGTTTGTAGGAAACGGATCG
GGTTGACGGGTTTCAAGTGCAGGTGCGGGACCATCTTCTGTGGGACCCAC
CGGTACCCGGAGAAGCACGGATGCTCGTTTGATTTCAAGAAGCTTGGCCG
AGAGGAGATTGCTCGAGCTAATCCTTTGATCAAAGCCGAGAAGCTCGAGA
AGATTTGATTCCCACCGTCCGGATCTCATTTCTTTTTANGAAATGAAGAC
GTCGTGTAATCAACGTCGTCAGGACCGTACATCTGTTCATGCCTGAGGCT
CGATGGNNGANAANNATTCTCTCTTTTTCCTTTTTCTTAATTTAAATTTT
AAAAAGGTAAATTTGGCTTCCTTTTTTTTTAATGCATGGAAAAGTTTGGG
GTAAAAAAAAATGGGAAGAGGTTCCTCAATTCCCGGAAATTTTAAACTTC
CTTCAAAAGGGAAAAATTGNTTTGAATTTGATTTGCCCGGGAAAACTGCT
GGCGGCAACATAAAAACCATCCCAAGGAGCGCCCTTTCAA
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