EY659100

Overview
NameEY659100
Unique NameEY659100
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659100_ssr363 microsatellite EY659100_ssr363:363..382. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8042 contig Csv1_Contig8042:34..922. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659100 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSJ (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. japonica GN=CSLF3 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.123e-19
Identity = 45/83 (54.22%), Postives = 63/83 (75.90%), Query Frame = 3
Query:  411 LPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 659
            LP +D+FVTTAD   EP + T+N VLS+LA DYPV + ACY+SDD+ + + + +LVE +KFA LWVPFC+K+ ++ R+P  YF
Sbjct:  167 LPGIDVFVTTADPIDEPVLYTMNCVLSILAADYPVDRSACYLSDDSGALILYEALVETAKFATLWVPFCRKHCIEPRSPESYF 249          
BLAST of EY659100 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSI (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. indica GN=CSLF3 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.123e-19
Identity = 45/83 (54.22%), Postives = 63/83 (75.90%), Query Frame = 3
Query:  411 LPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 659
            LP +D+FVTTAD   EP + T+N VLS+LA DYPV + ACY+SDD+ + + + +LVE +KFA LWVPFC+K+ ++ R+P  YF
Sbjct:  167 LPGIDVFVTTADPIDEPVLYTMNCVLSILAADYPVDRSACYLSDDSGALILYEALVETAKFATLWVPFCRKHCIEPRSPESYF 249          
BLAST of EY659100 vs. ExPASy Swiss-Prot
Match: CSLF6_ORYSJ (Probable mixed-linked glucan synthase 6 OS=Oryza sativa subsp. japonica GN=CSLF6 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.266e-19
Identity = 48/110 (43.64%), Postives = 68/110 (61.82%), Query Frame = 3
Query:  411 LPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF--XXXXXXXXXXXXLPADWKNMKKEYD 734
            LP +D+FVTTAD   EP + T N++LS+LA DYPV +  CY+SDD+   L + ++ EA+KFA LWVPFC+K+ ++ R P  YF                 D + ++KEYD
Sbjct:  183 LPGLDIFVTTADPIKEPILSTANSILSILAADYPVDRNTCYLSDDSGMLLTYEAMAEAAKFATLWVPFCRKHAIEPRGPESYFELKSHPYMGRAQEEFVNDRRRVRKEYD 292          
BLAST of EY659100 vs. ExPASy Swiss-Prot
Match: CSLF9_ORYSJ (Probable mixed-linked glucan synthase 9 OS=Oryza sativa subsp. japonica GN=CSLF9 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.717e-18
Identity = 40/83 (48.19%), Postives = 58/83 (69.88%), Query Frame = 3
Query:  411 LPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 659
            LP +D+F+ T D   EP + T+N++LS+LA DYP  + A Y+SDD  S  ++  L+E ++FA LWVPFC+K+ V+ RAP  YF
Sbjct:  151 LPGIDVFINTVDPVDEPMLYTMNSILSILATDYPADRHAAYLSDDGASLAHYEGLIETARFAALWVPFCRKHRVEPRAPESYF 233          
BLAST of EY659100 vs. ExPASy Swiss-Prot
Match: CSLH3_ORYSJ (Putative cellulose synthase-like protein H3 OS=Oryza sativa subsp. japonica GN=CSLH3 PE=3 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 1.591e-17
Identity = 39/74 (52.70%), Postives = 49/74 (66.22%), Query Frame = 3
Query:  519 KLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYFXXXXXXXXXXXXLPADWKNMKKEYDKL 740
            +LACYVSDD CSP+ +Y+L EA+ FA+ WVPFC+++ V +RAPFRYF               DW  MK EYDKL
Sbjct:  173 RLACYVSDDGCSPVTYYALREAAGFARTWVPFCRRHGVAVRAPFRYFASAPEFGPADRKFLDDWTFMKSEYDKL 246          

HSP 2 Score: 21.1718 bits (43), Expect = 1.591e-17
Identity = 9/19 (47.37%), Postives = 12/19 (63.16%), Query Frame = 2
Query:  806 FSNTERMNHPTIVKVYPEN 862
            F + +R NH  IVKV  +N
Sbjct:  269 FMDAKRTNHRAIVKVIWDN 287          
The following BLAST results are available for this feature:
BLAST of EY659100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CSLF3_ORYSJ1.123e-1954.22Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]
CSLF3_ORYSI1.123e-1954.22Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]
CSLF6_ORYSJ3.266e-1943.64Probable mixed-linked glucan synthase 6 OS=Oryza s... [more]
CSLF9_ORYSJ4.717e-1848.19Probable mixed-linked glucan synthase 9 OS=Oryza s... [more]
CSLH3_ORYSJ1.591e-1752.70Putative cellulose synthase-like protein H3 OS=Ory... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-001-D07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659100 ID=EY659100; Name=EY659100; organism=Citrus sinensis; type=EST; length=888bp
CCACGCGTCCGGTTTTTCAAGCTCATGGCCAATACAAAGTCGTCATGTCT
CCCTCTATACGAAAAAGTTTTTCATAAAAACACATATCATAGGGCTTTAG
ATGTTATCATCTTGTTCCTTCTTCTATGTCTGCTCTTCTATCGGCTCTCA
ACGTTGAAGAATCATGGATTTGCTTGGTTTCTTGCTTTTCTATGTGAGTC
TTGTTTTACTTTCATCTGGATTCTCATCGTCAACTGCAAGTGGACTCCTT
TGACCTACAAAACATATCCCCAACGTCTCCAAGAAAGGTAACAAATCAAA
TAACGTTAGCATTAATAATTTCCGCATCATTTGCAATTGTCTTTGTCATT
TTGCAAGTTACTACACACACACACACACACACATGTGTACGACTCAACAG
GATACAGGAGCTGCCCCCAGTGGACATGTTTGTGACAACTGCTGATGCTG
AACTCGAGCCGCCAATCATCACTGTAAACACAGTGCTGTCTTTGTTGGCA
GTTGATTATCCAGTTCACAAGCTCGCTTGCTATGTTTCTGATGATGCCTG
CTCACCTCTCAATTTCTACTCTCTTGTTGAAGCTTCTAAATTCGCTAAGC
TTTGGGTTCCATTCTGTAAAAAGTATAATGTTCAAATTAGAGCTCCCTTT
AGATACTTCCCAGATAGTGAGCCGTCCGATTCCAGNTCAGGGGGACTCCC
TGCAGACTGGAAAAACATGAAGAAAGAGTATGATAAACTTAGCCAAACAT
AGAACATGCAGCCAAAAGACCTTCTTTATTTGATCTAACAAGAAGAATGA
CTGNTTTCTCCAATACAGAACGCATGAATCATCCCACAATAGTGAAGGTA
TATCCGGAGAACAAGGGAGGCCTCTCAGATGAGATCCA
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