EY659096

Overview
NameEY659096
Unique NameEY659096
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length928
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659096 vs. ExPASy Swiss-Prot
Match: DCEA_ECO57 (Glutamate decarboxylase alpha OS=Escherichia coli O157:H7 GN=gadA PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 2.035e-61
Identity = 101/196 (51.53%), Postives = 136/196 (69.39%), Query Frame = 1
Query:    4 RVRNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKE 591
            R  N++A L++AP   +  AVG  T+GSSEA ML G+A K +W+ + +A GKP DKPN+V G  VQ+CW KFARY++VEL+E+ +  G   MDP + +E  DENTI V    G T  G +E  + L+D L +   +TG D  +H+DAASGGF+APF+ P++ WDFRLP VKSI+ SGHK+GL   G GWVIWR++E
Sbjct:   99 RCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEE 293          

HSP 2 Score: 46.595 bits (109), Expect = 2.035e-61
Identity = 26/80 (32.50%), Postives = 39/80 (48.75%), Query Frame = 3
Query:  594 LPEELIFHIXYLGADQPTFTPHFSKGSSQVIAQYYKLIXLXV*GIPACDGELSRKCMXLKEGLKKLAAQHCVKAPRGSXG 833
            LP+EL+F++ YLG    TF  +FS+ + QVIAQYY+ + L   G         +    L + + KL     +   R   G
Sbjct:  295 LPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEG 374          
BLAST of EY659096 vs. ExPASy Swiss-Prot
Match: DCEA_SHIFL (Glutamate decarboxylase alpha OS=Shigella flexneri GN=gadA PE=2 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 2.653e-61
Identity = 101/196 (51.53%), Postives = 136/196 (69.39%), Query Frame = 1
Query:    4 RVRNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKE 591
            R  N++A L++AP   +  AVG  T+GSSEA ML G+A K +W+ + +A GKP DKPN+V G  VQ+CW KFARY++VEL+E+ +  G   MDP + +E  DENTI V    G T  G +E  + L+D L +   +TG D  +H+DAASGGF+APF+ P++ WDFRLP VKSI+ SGHK+GL   G GWVIWR++E
Sbjct:   99 RCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEE 293          

HSP 2 Score: 46.2098 bits (108), Expect = 2.653e-61
Identity = 20/40 (50.00%), Postives = 29/40 (72.50%), Query Frame = 3
Query:  594 LPEELIFHIXYLGADQPTFTPHFSKGSSQVIAQYYKLIXL 713
            LP+EL+F++ YLG    TF  +FS+ + QVIAQYY+ + L
Sbjct:  295 LPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRL 334          
BLAST of EY659096 vs. ExPASy Swiss-Prot
Match: DCEB_ECOL6 (Glutamate decarboxylase beta OS=Escherichia coli O6 GN=gadB PE=2 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 7.669e-61
Identity = 100/196 (51.02%), Postives = 136/196 (69.39%), Query Frame = 1
Query:    4 RVRNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKE 591
            R  N++A L++AP   +  AVG  T+GSSEA ML G+A K +W+ + +A GKP +KPN+V G  VQ+CW KFARY++VEL+E+ +  G   MDP + +E  DENTI V    G T  G +E  + L+D L +   +TG D  +H+DAASGGF+APF+ P++ WDFRLP VKSI+ SGHK+GL   G GWVIWR++E
Sbjct:   99 RCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTNKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEE 293          

HSP 2 Score: 46.595 bits (109), Expect = 7.669e-61
Identity = 26/80 (32.50%), Postives = 39/80 (48.75%), Query Frame = 3
Query:  594 LPEELIFHIXYLGADQPTFTPHFSKGSSQVIAQYYKLIXLXV*GIPACDGELSRKCMXLKEGLKKLAAQHCVKAPRGSXG 833
            LP+EL+F++ YLG    TF  +FS+ + QVIAQYY+ + L   G         +    L + + KL     +   R   G
Sbjct:  295 LPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEG 374          
BLAST of EY659096 vs. ExPASy Swiss-Prot
Match: GADB_DICDI (Glutamate decarboxylase B OS=Dictyostelium discoideum GN=gadB PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.771e-55
Identity = 107/201 (53.23%), Postives = 140/201 (69.65%), Query Frame = 1
Query:    4 RVRNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKETCLKN 606
            R  +I+A L+NAP  DS   +G  T GSSEA ML GLA K  W+  RK  G P+DKPNIVTG  VQ+CW KFA YF++E++E+ +  G YVM+  + ++ VDENTI V   LG T   ++EDV  +++ L +  KE+G + PIHVDAASGGF+APF+  E+ WDFRLP VKSIN SGHK+GL   G+GWV+WR K+   K+
Sbjct:   97 RCLHILADLWNAP--DSSDTIGCSTTGSSEAAMLGGLALKWNWRENRKKLGLPYDKPNIVTGP-VQICWHKFALYFDIEIREIPMENGRYVMNSEEVLKRVDENTIGVIPTLGVTFTLQYEDVFSISNALDKFEKESGINIPIHVDAASGGFVAPFIQQEIIWDFRLPRVKSINASGHKFGLSPLGVGWVVWREKKDLHKD 294          
BLAST of EY659096 vs. ExPASy Swiss-Prot
Match: DCEB_LISIN (Glutamate decarboxylase beta OS=Listeria innocua GN=gadB PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.155e-52
Identity = 90/197 (45.69%), Postives = 129/197 (65.48%), Query Frame = 1
Query:    4 RVRNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPF--DKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNK 588
            R  NIIA L++AP +  +  +G  T+GSSEA ML G+A K  W+ + +  G      KPN+V  +  QVCWEKF  Y++++++ V + + +  ++  + ++ VDE TI V  ILG T  G ++D+  LN+ L E N +T +   IHVDAASGGF  PF+ P++ WDFRL  V SIN SGHKYGLVY GIGWV+W+++
Sbjct:   97 RCVNIIADLWHAPKD--QKFMGTSTIGSSEACMLGGMAMKFAWRKRAEKLGLDIYAQKPNLVISSGYQVCWEKFCVYWDIDMRVVPMDKDHMQLNTDQVLDYVDEYTIGVVGILGITYTGRYDDIYALNEKLEEYNSKTDYKVYIHVDAASGGFFTPFVEPDIIWDFRLKNVISINTSGHKYGLVYPGIGWVLWKDE 291          

HSP 2 Score: 46.595 bits (109), Expect = 1.155e-52
Identity = 19/38 (50.00%), Postives = 26/38 (68.42%), Query Frame = 3
Query:  594 LPEELIFHIXYLGADQPTFTPHFSKGSSQVIAQYYKLI 707
            LPEELIF + YLG + PT   +FS+ +S +I QYY  +
Sbjct:  294 LPEELIFKVSYLGGEMPTMQINFSRSASHIIGQYYNFL 331          
BLAST of EY659096 vs. ExPASy Swiss-Prot
Match: DCEB_LISMO (Glutamate decarboxylase beta OS=Listeria monocytogenes GN=gadB PE=3 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 1.962e-52
Identity = 90/197 (45.69%), Postives = 129/197 (65.48%), Query Frame = 1
Query:    4 RVRNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPF--DKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNK 588
            R  NIIA L++AP +  +  +G  T+GSSEA ML G+A K  W+ + +  G      KPN+V  +  QVCWEKF  Y++++++ V + + +  ++  + ++ VDE TI V  ILG T  G ++D+  LN+ L E N +T +   IHVDAASGGF  PF+ P++ WDFRL  V SIN SGHKYGLVY GIGWV+W+++
Sbjct:   97 RCVNIIADLWHAPKD--QKFMGTSTIGSSEACMLGGMAMKFAWRKRAEKLGLDIYAKKPNLVISSGYQVCWEKFCVYWDIDMRVVPMDKEHMQLNTDQVLDYVDEYTIGVVGILGITYTGRYDDIYALNEKLEEYNSKTDYKVYIHVDAASGGFFTPFVEPDIIWDFRLKNVISINTSGHKYGLVYPGIGWVLWKDE 291          

HSP 2 Score: 46.595 bits (109), Expect = 1.962e-52
Identity = 19/38 (50.00%), Postives = 26/38 (68.42%), Query Frame = 3
Query:  594 LPEELIFHIXYLGADQPTFTPHFSKGSSQVIAQYYKLI 707
            LPEELIF + YLG + PT   +FS+ +S +I QYY  +
Sbjct:  294 LPEELIFKVSYLGGEMPTMQINFSRSASHIIGQYYNFL 331          
BLAST of EY659096 vs. ExPASy Swiss-Prot
Match: DCE_LACLM (Glutamate decarboxylase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=gadB PE=1 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 1.452e-49
Identity = 97/198 (48.99%), Postives = 134/198 (67.68%), Query Frame = 1
Query:    4 RVRNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFD--KPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKE 591
            R  N+IA L+NA   + E  +G  T+GSSEA ML G+A K  W+ + +  G   +  KPN+V  +  QVCWEKF  Y+++E++EV +   +  ++  K ++ VDE TI V  I+G T  G ++D+K L++L+ E NK+T +   IHVDAASGG  APF+ PELEWDFRL  V SIN SGHKYGLVY G+GWV+WR+K+
Sbjct:   99 RCVNMIADLWNA--SEKEKFMGTSTIGSSEACMLGGMAMKFSWRKRAEKLGLDINAKKPNLVISSGYQVCWEKFCVYWDIEMREVPMDREHMSINLEKVMDYVDEYTIGVVGIMGITYTGRYDDIKALDNLIEEYNKQTDYKVYIHVDAASGGLYAPFVEPELEWDFRLKNVISINTSGHKYGLVYPGVGWVLWRDKK 294          
BLAST of EY659096 vs. ExPASy Swiss-Prot
Match: DCE_LACLA (Glutamate decarboxylase OS=Lactococcus lactis subsp. lactis GN=gadB PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.452e-49
Identity = 97/198 (48.99%), Postives = 135/198 (68.18%), Query Frame = 1
Query:    4 RVRNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFD--KPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKE 591
            R  N+IA L+NA   + E  +G  T+GSSEA ML G+A K  W+ + +  G   +  KPN+V  +  QVCWEKF  Y+++E++EV + + +  ++  K ++ VDE TI V  I+G T  G ++D+K L++L+ E NK+T +   IHVDAASGG  APF+ PELEWDFRL  V SIN SGHKYGLVY G+GWV+WR+K+
Sbjct:   99 RCVNMIADLWNA--SEKEKFMGTSTIGSSEACMLGGMAMKFSWRKRAEKLGLDINAKKPNLVISSGYQVCWEKFCIYWDIEMREVPMDKEHMSINLDKVMDYVDEYTIGVVGIMGITYTGRYDDIKALDNLIEEYNKQTDYKVYIHVDAASGGLYAPFVEPELEWDFRLKNVISINTSGHKYGLVYPGVGWVLWRDKK 294          
BLAST of EY659096 vs. ExPASy Swiss-Prot
Match: DCEA_LISMO (Glutamate decarboxylase alpha OS=Listeria monocytogenes GN=gadA PE=3 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 8.810e-47
Identity = 93/195 (47.69%), Postives = 129/195 (66.15%), Query Frame = 1
Query:   13 NIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFD--KPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKE 591
            N++A L+N  +++SE  +G  TVGSSEA ML G+A K +W++     G      KP++V  +  QVCWEKF  Y+++EL+EV +SE +  ++    ++ VDE TI +  ILG T  G+F+D+  LNDL+ + N     +  IHVD ASG    PF+ P LEWDFRLP V SIN SGHKYGLVY G+GW++WR+KE
Sbjct:   98 NMLADLWN--VDESEHYMGTSTVGSSEACMLGGMAMKFRWRSAALKNGLDIHAKKPSLVISSGYQVCWEKFCVYWDIELREVPMSEEHLSINTDIIMDYVDEYTIGIVGILGITYTGKFDDIMTLNDLVEDYNNTHDNEVVIHVDGASGAMFTPFVEPGLEWDFRLPNVVSINTSGHKYGLVYPGVGWILWRDKE 290          
BLAST of EY659096 vs. ExPASy Swiss-Prot
Match: DCEC_LISIN (Probable glutamate decarboxylase gamma OS=Listeria innocua GN=lin2528 PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.963e-46
Identity = 92/198 (46.46%), Postives = 127/198 (64.14%), Query Frame = 1
Query:    4 RVRNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFD--KPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKE 591
            R  NI+A L+NAP E S   +G  TVGSSEA ML GLA K +W+N  +  G      +PN++  +  QVCWEKF  Y++V+++ V + + +  +D  K  E+VDE TI +  ILG T  G+F+D+ LL++ +   N+       IH+D ASG    PF+ PEL WDFRL  V SIN SGHKYGLVY G+GW++W++KE
Sbjct:  100 RCVNILADLWNAPKEMSY--LGTSTVGSSEACMLGGLAMKFRWRNNAEKRGLDIQAKRPNLIISSGYQVCWEKFCVYWDVDMRVVPMDKEHLSLDVEKVFELVDEYTIGIVGILGITYTGKFDDIALLDEKVEAYNEANEHQLVIHIDGASGAMFTPFVNPELPWDFRLKNVVSINTSGHKYGLVYPGVGWILWKDKE 295          
The following BLAST results are available for this feature:
BLAST of EY659096 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
DCEA_ECO572.035e-6151.53Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
DCEA_SHIFL2.653e-6151.53Glutamate decarboxylase alpha OS=Shigella flexneri... [more]
DCEB_ECOL67.669e-6151.02Glutamate decarboxylase beta OS=Escherichia coli O... [more]
GADB_DICDI1.771e-5553.23Glutamate decarboxylase B OS=Dictyostelium discoid... [more]
DCEB_LISIN1.155e-5245.69Glutamate decarboxylase beta OS=Listeria innocua G... [more]
DCEB_LISMO1.962e-5245.69Glutamate decarboxylase beta OS=Listeria monocytog... [more]
DCE_LACLM1.452e-4948.99Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
DCE_LACLA1.452e-4948.99Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
DCEA_LISMO8.810e-4747.69Glutamate decarboxylase alpha OS=Listeria monocyto... [more]
DCEC_LISIN1.963e-4646.46Probable glutamate decarboxylase gamma OS=Listeria... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-001-D03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659096 ID=EY659096; Name=EY659096; organism=Citrus sinensis; type=EST; length=928bp
CCACGCGTCCGGAACATCATTGCCCGACTGTTCAATGCTCCACTGGAGGA
CTCCGAGACGGCTGTCGGAGTTGGAACCGTAGGATCATCGGAAGCCATAA
TGTTGGCCGGCCTTGCATTCAAAAGAAAGTGGCAGAACAAGCGCAAGGCT
GAAGGAAAGCCCTTTGACAAACCCAACATTGTCACTGGAGCGAACGTTCA
GGTCTGCTGGGAGAAATTTGCAAGGTATTTTGAGGTAGAGTTGAAGGAAG
TGAAGCTGTCGGAAGGCTACTATGTGATGGACCCAGTCAAAGCTGTAGAA
ATGGTGGATGAAAACACTATCTGTGTTGCTGCTATTCTGGGTTCTACTCT
TAATGGAGAATTTGAAGATGTCAAGCTCTTGAACGACCTTTTGGCAGAGA
AGAACAAGGAAACAGGATGGGATACTCCAATTCATGTTGATGCTGCAAGT
GGTGGCTTCATTGCACCATTTTTGTACCCAGAGCTTGAATGGGACTTCCG
CTTGCCGCTGGTGAAGAGTATTAATGTTAGTGGCCACAAGTACGGGCTTG
TGTATGCTGGTATTGGTTGGGTTATTTGGAGAAACAAAGAGACTTGCCTG
AAGAACTCATCTTCCACATCANTTACCTAGGAGCTGATCAACCCACCTTC
ACCCCTCATTTCTCTAAAGGNTCTAGCCAAGTAATTGCTCAGTACTACAA
ACTAATCCNGCTTANNGTTTGAGGGATACCCGCATGTGATGGAGAATTGT
CACGAAAATGCATGGNGCTGAAAGAAGGACTAAAGAAACTGGCCGCTCAA
CATTGTGTCAAGGCACCAAGGGGTTCCGNTGGGGGCATTTCTCTCAGGAA
CACAACGCACGATGAATCAAAGGGCCGATTGCTGCCCGTTTTTGTTGATT
GTGCAGGTAAACATGGCCGTGACGTCAG
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