EY675538

Overview
NameEY675538
Unique NameEY675538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1095
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675538 vs. ExPASy Swiss-Prot
Match: RFCS_AERPE (Replication factor C small subunit OS=Aeropyrum pernix GN=rfcS PE=3 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 5.813e-19
Identity = 39/91 (42.86%), Postives = 65/91 (71.43%), Query Frame = 2
Query:  215 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELSASDDKGIDVVRQQIQDFGYTQS 487
            WVEKYRP+SL D+   + +V+ + +   +  +PHLL  GPPGTGKT+   A+A  L+G  Y   +LEL+ASD++GI+V+R+++++F  +++
Sbjct:    9 WVEKYRPRSLDDIVDQKHVVERLKQFVKQRNMPHLLFAGPPGTGKTTAAHALAHDLFGENYRQYMLELNASDERGINVIREKVKEFARSRT 99          
BLAST of EY675538 vs. ExPASy Swiss-Prot
Match: RFCS_NATPD (Replication factor C small subunit OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rfcS PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 7.592e-19
Identity = 41/86 (47.67%), Postives = 59/86 (68.60%), Query Frame = 2
Query:  215 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELSASDDKGIDVVRQQIQDF 472
            W+EKYRPQ+L D+  H  I + + +  ++N LPHLL  GP G GKT+   A+A+++YG  +    LEL+ASD +GIDVVR +I+ F
Sbjct:   14 WIEKYRPQTLDDIVGHESITERLKQYIAQNDLPHLLFAGPAGVGKTTAATAIAKEVYGDDWRENFLELNASDQRGIDVVRDRIKSF 99          
BLAST of EY675538 vs. ExPASy Swiss-Prot
Match: RFCS_ARCFU (Replication factor C small subunit OS=Archaeoglobus fulgidus GN=rfcS PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 9.916e-19
Identity = 40/89 (44.94%), Postives = 62/89 (69.66%), Query Frame = 2
Query:  215 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELSASDDKGIDVVRQQIQDFGYT 481
            WVEKYRP++L +V    +++  +        +PHLL  GPPGTGKT+T +A+AR L+G  + +  +E++ASD++GIDVVR +I++F  T
Sbjct:    7 WVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFART 95          
BLAST of EY675538 vs. ExPASy Swiss-Prot
Match: RFCS_STAMF (Replication factor C small subunit OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rfcS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.885e-18
Identity = 39/90 (43.33%), Postives = 60/90 (66.67%), Query Frame = 2
Query:  215 WVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELSASDDKGIDVVRQQIQDFGYTQ 484
            W EKYRP++L ++    +IV  + +   E  +PHLL  GPPGTGKT+    +A  L+G  Y   +LEL+ASD++GIDV+R ++++F  T+
Sbjct:   13 WAEKYRPKTLDEIVDQEEIVSRLKQFVKERNMPHLLFAGPPGTGKTTAAHCLAHDLFGENYRQYMLELNASDERGIDVIRSKVKEFARTR 102          
BLAST of EY675538 vs. ExPASy Swiss-Prot
Match: RFC2_CHICK (Replication factor C subunit 2 OS=Gallus gallus GN=RFC2 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.885e-18
Identity = 42/87 (48.28%), Postives = 61/87 (70.11%), Query Frame = 2
Query:  212 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELSASDDKGIDVVRQQIQDF 472
            PWVEKYRP  L +V  + D V  ++    E  +P++++ GPPGTGKT++IL +AR L G    + +LEL+AS+D+GIDVVR +I+ F
Sbjct:   42 PWVEKYRPLKLCEVVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMF 128          
BLAST of EY675538 vs. ExPASy Swiss-Prot
Match: RFC4_CAEEL (Replication factor C subunit 4 OS=Caenorhabditis elegans GN=rfc-4 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.768e-18
Identity = 45/91 (49.45%), Postives = 61/91 (67.03%), Query Frame = 2
Query:  203 KASPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ-YHNMILELSASDDKGIDVVRQQIQDF 472
            K   W EKYRP++L D+A   ++V  +        LPHLL YGPPGTGKTS  LA  R+L+    +H+ +L+L+ASD++GI VVRQ+IQ F
Sbjct:   13 KVLTWTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSAALAFCRQLFPKNIFHDRVLDLNASDERGIAVVRQKIQSF 103          
BLAST of EY675538 vs. ExPASy Swiss-Prot
Match: RFC4_SCHPO (Replication factor C subunit 4 OS=Schizosaccharomyces pombe GN=rfc4 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 6.427e-18
Identity = 42/94 (44.68%), Postives = 62/94 (65.96%), Query Frame = 2
Query:  212 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELSASDDKGIDVVRQQIQDFGYTQSLL 493
            PWVEKYRP  L D+  + + +D +  +  E  +PHL++ G PG GKT++IL +A  L G  Y   +LEL+ASD++GIDVVR +I+ F   + +L
Sbjct:   22 PWVEKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISGMPGIGKTTSILCLAHALLGPAYKEGVLELNASDERGIDVVRNRIKAFAQKKVIL 115          
BLAST of EY675538 vs. ExPASy Swiss-Prot
Match: RFC2_RAT (Replication factor C subunit 2 OS=Rattus norvegicus GN=Rfc2 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 8.394e-18
Identity = 41/87 (47.13%), Postives = 61/87 (70.11%), Query Frame = 2
Query:  212 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELSASDDKGIDVVRQQIQDF 472
            PWVEKYRP  L ++  + D V  ++    E  +P++++ GPPGTGKT++IL +AR L G    + +LEL+AS+D+GIDVVR +I+ F
Sbjct:   32 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMF 118          
BLAST of EY675538 vs. ExPASy Swiss-Prot
Match: RFC2_MOUSE (Replication factor C subunit 2 OS=Mus musculus GN=Rfc2 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 8.394e-18
Identity = 41/87 (47.13%), Postives = 61/87 (70.11%), Query Frame = 2
Query:  212 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELSASDDKGIDVVRQQIQDF 472
            PWVEKYRP  L ++  + D V  ++    E  +P++++ GPPGTGKT++IL +AR L G    + +LEL+AS+D+GIDVVR +I+ F
Sbjct:   32 PWVEKYRPLKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMF 118          
BLAST of EY675538 vs. ExPASy Swiss-Prot
Match: RFC2_BOVIN (Replication factor C subunit 2 OS=Bos taurus GN=RFC2 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 8.394e-18
Identity = 41/87 (47.13%), Postives = 61/87 (70.11%), Query Frame = 2
Query:  212 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELSASDDKGIDVVRQQIQDF 472
            PWVEKYRP  L ++  + D V  ++    E  +P++++ GPPGTGKT++IL +AR L G    + +LEL+AS+D+GIDVVR +I+ F
Sbjct:   35 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMF 121          
The following BLAST results are available for this feature:
BLAST of EY675538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
RFCS_AERPE5.813e-1942.86Replication factor C small subunit OS=Aeropyrum pe... [more]
RFCS_NATPD7.592e-1947.67Replication factor C small subunit OS=Natronomonas... [more]
RFCS_ARCFU9.916e-1944.94Replication factor C small subunit OS=Archaeoglobu... [more]
RFCS_STAMF2.885e-1843.33Replication factor C small subunit OS=Staphylother... [more]
RFC2_CHICK2.885e-1848.28Replication factor C subunit 2 OS=Gallus gallus GN... [more]
RFC4_CAEEL3.768e-1849.45Replication factor C subunit 4 OS=Caenorhabditis e... [more]
RFC4_SCHPO6.427e-1844.68Replication factor C subunit 4 OS=Schizosaccharomy... [more]
RFC2_RAT8.394e-1847.13Replication factor C subunit 2 OS=Rattus norvegicu... [more]
RFC2_MOUSE8.394e-1847.13Replication factor C subunit 2 OS=Mus musculus GN=... [more]
RFC2_BOVIN8.394e-1847.13Replication factor C subunit 2 OS=Bos taurus GN=RF... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-011-H09-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675538 ID=EY675538; Name=EY675538; organism=Citrus sinensis; type=EST; length=1095bp
CTCAACTGTGAATCGCCCCTTAAAGGCGGGTGTGAGAGTGAGAGAGACAG
AGAGAGCCCAGCAAGAGAGAGCGAGGCCAGCAAACAAAATGGCGGAAGCG
GAAACGGTGTCGCTTATGGACTTCGACGAAGACGAGAACCAGAACTTGAA
ACCAAAAGACAACGGGAAAAACGTCATCGTTTCAGGCACGCCACCCGACA
TTAAAGCCTCTCCTTGGGTCGAAAAGTACCGACCTCAGTCCCTCGCTGAC
GTGGCCGCTCATCGCGACATTGTTGATACCATTGATAGGTTGACTAGCGA
GAACAGACTGCCCCATCTTCTGCTGTATGGTCCTCCCGGCACAGGCAAAA
CATCTACCATTCTTGCTGTTGCACGGAAGCTTTATGGAGCACAATATCAC
AATATGATTCTGGAGCTGAGTGCGTCTGATGATAAAGGAATTGACGTTGT
GCGGCAACAGATCCAAGATTTTGGCTACACTCAAAGCCTCCTCATTTGGG
GGTAAAGGGCTCAGTCAAAGCGGGGCTTGCTTGGAGGAGGGCGGATGCCC
TGGACAAAAGAAGCTCAGTTTTGCCCTTGGGTAAAAGTGATTGAAGAAAA
ACAACGAAAAAACCCTAGGTTTGCGCCTTATCTGGTAATCAAGGTCAACA
GAATTTTTTCCTGCCTCTGGCAATCCTAAATGTGACCCAAAATCCTAATT
TTGCTCCCCCTTGAACCCGGTTGTCAGGGACCTGAAGCTCCTTCAAATGT
GTGAATAAAGGGGCTGGAAGGGCGTTGGGATTATAAAAAAAGGGGGGGGT
TGGCACAGCATTTGGTGAGGGCTTTAGGAAAGGGGAGATATAAAATGAAA
AGGGCCTTGAAAATTTTTGTGAGCAATCAGAACAAACTTATGTGGGCTAC
TCACCCCACCTAATTAAAAAAAAAAAAGAGATTGGTAAAATCATTTGTGG
GCCAACAGGGAGAAAAACCGCATTCTAGACAACCATAGAGGAGAACATTG
GGGACATGAAAATAATTATAATATTTAAAGTTGAGTTCTTTAGTGATAGC
AAAAAGAACAATGGCGTGATATTTTTTGATTTGATGGGTGACGGC
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