EY675374

Overview
NameEY675374
Unique NameEY675374
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1085
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675374 vs. ExPASy Swiss-Prot
Match: RS4_CARGR (40S ribosomal protein S4 OS=Carabus granulatus GN=RpS4 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 5.702e-43
Identity = 81/126 (64.29%), Postives = 102/126 (80.95%), Query Frame = 2
Query:    5 GQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRQA 382
            G KGIP++ T+DGRTIRYPDP+IK NDTI+L++  +KI + IKFD GN+ M+TGGRN GRVG + NRE+H GSF+ +HI+D+ GH FA RL NVF IGKG+K +VSLP+GKG+KLSI EE  KR A
Sbjct:  132 GPKGIPFLVTHDGRTIRYPDPIIKVNDTIQLEIANSKIMDSIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHTFANRLNNVFIIGKGSKAYVSLPRGKGVKLSIAEERDKRLA 257          
BLAST of EY675374 vs. ExPASy Swiss-Prot
Match: RS4Y1_PANTR (40S ribosomal protein S4, Y isoform 1 OS=Pan troglodytes GN=RPS4Y1 PE=2 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 7.448e-43
Identity = 78/126 (61.90%), Postives = 99/126 (78.57%), Query Frame = 2
Query:    5 GQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRQA 382
            G KGIP++ T+D RTIRYPDP+IK NDT+++DL T KI  FIKFD GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATRL N+F IG G KPW+SLP+GKGI+L++  E  KR A
Sbjct:  132 GVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPRGKGIRLTVAAERDKRLA 257          
BLAST of EY675374 vs. ExPASy Swiss-Prot
Match: RS4Y1_PANPA (40S ribosomal protein S4, Y isoform 1 OS=Pan paniscus GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 7.448e-43
Identity = 78/126 (61.90%), Postives = 99/126 (78.57%), Query Frame = 2
Query:    5 GQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRQA 382
            G KGIP++ T+D RTIRYPDP+IK NDT+++DL T KI  FIKFD GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATRL N+F IG G KPW+SLP+GKGI+L++  E  KR A
Sbjct:  132 GVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPRGKGIRLTVAAERDKRLA 257          
BLAST of EY675374 vs. ExPASy Swiss-Prot
Match: RS4_YEAST (40S ribosomal protein S4 OS=Saccharomyces cerevisiae GN=RPS4A PE=1 SV=3)

HSP 1 Score: 173.711 bits (439), Expect = 1.659e-42
Identity = 79/126 (62.70%), Postives = 102/126 (80.95%), Query Frame = 2
Query:    5 GQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRQA 382
            G+KG+PY+ T+DGRTIRYPDP IK NDT+K+DL + KIT+FIKFD G +V VTGGRN GR+G I ++E+H G F+ +HI+D+L + F TRL NVF IG+  KP++SLPKGKGIKLSI EE  +R+A
Sbjct:  132 GKKGVPYVVTHDGRTIRYPDPNIKVNDTVKIDLASGKITDFIKFDAGKLVYVTGGRNLGRIGTIVHKERHDGGFDLVHIKDSLDNTFVTRLNNVFVIGEQGKPYISLPKGKGIKLSIAEERDRRRA 257          
BLAST of EY675374 vs. ExPASy Swiss-Prot
Match: RS4_DICDI (40S ribosomal protein S4 OS=Dictyostelium discoideum GN=rps4 PE=1 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 7.214e-38
Identity = 70/120 (58.33%), Postives = 93/120 (77.50%), Query Frame = 2
Query:    5 GQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEE 364
            G +GIPY++T DGRTIRYPDP I  +DTIK+D+E+ KIT FI F+V N+ M+ GG N GRVG + +REKH GSF+ +H+ D  GH+FATRL NVF IGK ++ +VSLP GKG++ S ++E
Sbjct:  132 GNQGIPYVHTDDGRTIRYPDPAISIHDTIKIDIESGKITAFIPFEVNNLCMIVGGHNLGRVGAVTHREKHPGSFDIVHVTDTAGHQFATRLSNVFIIGKASQTFVSLPAGKGVRRSRVDE 251          
BLAST of EY675374 vs. ExPASy Swiss-Prot
Match: RS4_CAEEL (40S ribosomal protein S4 OS=Caenorhabditis elegans GN=rps-4 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 6.107e-37
Identity = 75/124 (60.48%), Postives = 92/124 (74.19%), Query Frame = 2
Query:   11 KGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRQA 382
            KG+P + T DGRTIRYPDP +K NDTI  ++ T KIT+ +KF+ GN+  VTGGRN GRVGII +RE+  G+ + IHI+D+ GH FATR+ NVF IGKG K  VSLP G GI+LSI EE  KR A
Sbjct:  133 KGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVSLPTGAGIRLSIAEERDKRMA 256          
BLAST of EY675374 vs. ExPASy Swiss-Prot
Match: RS4_TETTH (40S ribosomal protein S4 OS=Tetrahymena thermophila PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.721e-31
Identity = 63/124 (50.81%), Postives = 88/124 (70.97%), Query Frame = 2
Query:    5 GQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 376
            G   IPYI T+D RTIR+P+P IK  DT+K DL  NKI  F   + GNV  +  G N GRVGII++ EKH+GSF+  H++DA G+ FATRLGN+F +G+G K ++ LP G G++ +I+EE +++
Sbjct:  133 GPNQIPYIVTHDSRTIRFPNPEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDAKGNAFATRLGNIFVLGQGKKLYIELPSGDGVRETILEERKRK 256          
BLAST of EY675374 vs. ExPASy Swiss-Prot
Match: RS4_HORSE (40S ribosomal protein S4 (Fragment) OS=Equus caballus GN=RPS4 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 6.121e-29
Identity = 56/82 (68.29%), Postives = 70/82 (85.37%), Query Frame = 2
Query:    5 GQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDA 250
            G KGIP++ T+D RTIRYPDPLIK NDTI++DLET KIT+FIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA
Sbjct:  113 GTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDA 194          
BLAST of EY675374 vs. ExPASy Swiss-Prot
Match: RS4_ENCCU (40S ribosomal protein S4 OS=Encephalitozoon cuniculi GN=RPS4 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 5.206e-12
Identity = 43/122 (35.25%), Postives = 70/122 (57.38%), Query Frame = 2
Query:    2 FGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKP-WVSLPKGKGIKLSIIEE 364
            +  +GIPYI +  G +IR+ DP I    TIK+  ET+K+ E+I      V+ V+ G+ RGRVG+I N    +G      + D  G+ F+    +   IG+ ++  W++LPK +GI+ S +E+
Sbjct:  130 YENQGIPYIVSSCGLSIRFCDPAIDLGYTIKISNETSKVIEYIVPGPDKVIFVSRGKARGRVGVI-NTISTQGKETVYGMTDFAGNTFSCTSKSCILIGESSENIWITLPKERGIRQSELEK 250          
The following BLAST results are available for this feature:
BLAST of EY675374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
RS4_CARGR5.702e-4364.2940S ribosomal protein S4 OS=Carabus granulatus GN=... [more]
RS4Y1_PANTR7.448e-4361.9040S ribosomal protein S4, Y isoform 1 OS=Pan trogl... [more]
RS4Y1_PANPA7.448e-4361.9040S ribosomal protein S4, Y isoform 1 OS=Pan panis... [more]
RS4_YEAST1.659e-4262.7040S ribosomal protein S4 OS=Saccharomyces cerevisi... [more]
RS4_DICDI7.214e-3858.3340S ribosomal protein S4 OS=Dictyostelium discoide... [more]
RS4_CAEEL6.107e-3760.4840S ribosomal protein S4 OS=Caenorhabditis elegans... [more]
RS4_TETTH1.721e-3150.8140S ribosomal protein S4 OS=Tetrahymena thermophil... [more]
RS4_HORSE6.121e-2968.2940S ribosomal protein S4 (Fragment) OS=Equus cabal... [more]
RS4_ENCCU5.206e-1235.2540S ribosomal protein S4 OS=Encephalitozoon cunicu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-009-G02-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675374 ID=EY675374; Name=EY675374; organism=Citrus sinensis; type=EST; length=1085bp
ATTTGGGCAGAAGGGAATCCCTTACATCAACACTTATGATGGGAGGACTA
TTCGCTACCCAGACCCACTCATCAAGGCCAATGATACCATCAAGCTGGAC
CTGGAGACTAACAAGATCACCGAGTTCATCAAGTTTGATGTTGGAAATGT
TGTGATGGTGACTGGAGGGAGAAACAGAGGACGTGTTGGAATCATTAAGA
ACAGAGAAAAGCATAAGGGTAGCTTTGAAACTATCCACATCCAGGATGCT
CTTGGTCATGAGTTTGCAACTCGTCTTGGAAATGTGTTCACCATTGGCAA
GGGTACAAAGCCATGGGTTTCTCTTCCCAAGGGCAAGGGTATTAAACTAT
CCATCATTGAGGAGGCAAGGAAGAGACAAGCCCTGGGCGACTTCAGCAGC
CGCCCAATGATGATAAACTTCATGGTCTTTGCGATATGGTTTTTAGAAAG
TTTACTAAATGAAAGTTTTGCATTTTGACACTTTTTGGTGATTGCTTGTT
CGAATTTTCTTGGTGGTGAAACCAAGTTATCATAAAGGTTTATGAAGTCA
AATTACTGGGTTTCAATTTTTAGTTTTTTGAACAAACAGGGTGGAACCCT
TTTTTTTTTATCACCGGCTATAATTATTGGGCAAATGAATTTTTTGGGCC
CCAAAAAAAAAAAAAAAAAAAAAGGGGGGGCCCCCCCCCCAAAAAGGAAC
CCAAGCCTTTAAGTTAACCCGGGGGGTTGGGCAACAGTTCAAAACCCCTC
TTTTTTTGGGGGGCCCCCCCCTAATTTTTCATTTTTCCCGTGGGCCCCTT
CTTTTTTTAACAAAACTTCCGTGGCGGGGGGGGAAAAAACCCCCCTTGGC
GTTTTTTCCCCCCACCAATATTAAACCCCCCCTTGTGTCCTGCCAACACC
TCCCCCCCTTTTTTCCCCCCCCGGGGCGGGGGGTGAAAAAAAAAATACAA
GAAAAAAAGACGCCCCCCCCCCCCCCCAATATTTCGCCCCCTCCCTCTCC
ACCCCTAAAAAAATTTTGTTACCCCACCACCCCCCCCTGGATAGGGAGGG
GGGGGGGAGAAGAGAGGGGGAGACGAGGAAGGCAC
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