EY675364

Overview
NameEY675364
Unique NameEY675364
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1007
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675364 vs. ExPASy Swiss-Prot
Match: RNPH_CELJU (Ribonuclease PH OS=Cellvibrio japonicus (strain Ueda107) GN=rph PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.365e-11
Identity = 47/134 (35.07%), Postives = 67/134 (50.00%), Query Frame = 2
Query:    2 QALVRCEYSMASFSTGDRMTKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTV 358
            Q  +  EY M   STG RM +     K   R+ EI  +I +++ A I  + +  + I +   V+QADGGTR+A I  A +AL DA             P++  + S S G     P+LDL+Y EDSA   D+ V
Sbjct:   57 QGWLTAEYGMLPRSTGTRMDREAARGKQQGRTVEIQRLIGRSLRAAIDLNALGENTIHLDCDVIQADGGTRTASITGAWVALADAVAWLKAEGRVTDEPLKRAIASVSVGIYQGVPVLDLDYPEDSAADTDMNV 190          
BLAST of EY675364 vs. ExPASy Swiss-Prot
Match: RNPH_SHESR (Ribonuclease PH OS=Shewanella sp. (strain MR-7) GN=rph PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.782e-11
Identity = 50/139 (35.97%), Postives = 69/139 (49.64%), Query Frame = 2
Query:    2 QALVRCEYSMASFSTGDRMTKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDA-------GI----PMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPT 373
            Q  V  EY M   ST  RM +     K   R+ EI  +I + + AC+    +  + I I   V+QADGGTR+A I  A +AL DA       GI    P++ ++ + S G  N   + DL YVEDSA   D+ V +  T
Sbjct:   56 QGWVTAEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRACVDMKALGENTIVIDCDVIQADGGTRTASITGACVALVDALNWARGKGIIKSNPLKFLIAAVSVGIYNGEAISDLEYVEDSAAETDMNVVMTET 194          
BLAST of EY675364 vs. ExPASy Swiss-Prot
Match: RNPH_SHESM (Ribonuclease PH OS=Shewanella sp. (strain MR-4) GN=rph PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.782e-11
Identity = 50/139 (35.97%), Postives = 69/139 (49.64%), Query Frame = 2
Query:    2 QALVRCEYSMASFSTGDRMTKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDA-------GI----PMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPT 373
            Q  V  EY M   ST  RM +     K   R+ EI  +I + + AC+    +  + I I   V+QADGGTR+A I  A +AL DA       GI    P++ ++ + S G  N   + DL YVEDSA   D+ V +  T
Sbjct:   56 QGWVTAEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRACVDMKALGENTIVIDCDVIQADGGTRTASITGACVALVDALNWARGKGIIKSNPLKFLIAAVSVGIYNGEAISDLEYVEDSAAETDMNVVMTET 194          
BLAST of EY675364 vs. ExPASy Swiss-Prot
Match: RNPH_SHESA (Ribonuclease PH OS=Shewanella sp. (strain ANA-3) GN=rph PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.782e-11
Identity = 50/139 (35.97%), Postives = 69/139 (49.64%), Query Frame = 2
Query:    2 QALVRCEYSMASFSTGDRMTKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDA-------GI----PMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPT 373
            Q  V  EY M   ST  RM +     K   R+ EI  +I + + AC+    +  + I I   V+QADGGTR+A I  A +AL DA       GI    P++ ++ + S G  N   + DL YVEDSA   D+ V +  T
Sbjct:   56 QGWVTAEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRACVDMKALGENTIVIDCDVIQADGGTRTASITGACVALVDALNWARGKGIIKSNPLKFLIAAVSVGIYNGEAISDLEYVEDSAAETDMNVVMTET 194          
BLAST of EY675364 vs. ExPASy Swiss-Prot
Match: RNPH_SHEPA (Ribonuclease PH OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=rph PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.782e-11
Identity = 49/139 (35.25%), Postives = 70/139 (50.36%), Query Frame = 2
Query:    2 QALVRCEYSMASFSTGDRMTKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDA-------GI----PMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPT 373
            Q  V  EY M   ST  RM +     K   R+ EI  +I +++ A +   L+  + I I   V+QADGGTR+A I  A +AL DA       GI    P++ ++ + S G     P+ DL Y+EDSA   D+ V +  T
Sbjct:   56 QGWVTAEYGMLPRSTHSRMQREAARGKQSGRTQEIQRLIGRSLRAAVDMKLLGENTIVIDCDVIQADGGTRTAAITGACVALVDALNWARGKGILKTNPLKFLIAAVSVGIYKGEPICDLEYIEDSAAETDMNVVMTET 194          
BLAST of EY675364 vs. ExPASy Swiss-Prot
Match: RNPH_SHEHH (Ribonuclease PH OS=Shewanella halifaxensis (strain HAW-EB4) GN=rph PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.782e-11
Identity = 49/139 (35.25%), Postives = 70/139 (50.36%), Query Frame = 2
Query:    2 QALVRCEYSMASFSTGDRMTKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDA-------GI----PMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPT 373
            Q  V  EY M   ST  RM +     K   R+ EI  +I +++ A +   L+  + I I   V+QADGGTR+A I  A +AL DA       GI    P++ ++ + S G     P+ DL Y+EDSA   D+ V +  T
Sbjct:   56 QGWVTAEYGMLPRSTHSRMQREAARGKQSGRTQEIQRLIGRSLRAAVDMKLLGENTIVIDCDVIQADGGTRTAAITGACVALVDALNWARGKGILKTNPLKFLIAAVSVGIYKGEPICDLEYIEDSAAETDMNVVMTET 194          
BLAST of EY675364 vs. ExPASy Swiss-Prot
Match: RNPH_NITEC (Ribonuclease PH OS=Nitrosomonas eutropha (strain C91) GN=rph PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.782e-11
Identity = 49/134 (36.57%), Postives = 67/134 (50.00%), Query Frame = 2
Query:    2 QALVRCEYSMASFSTGDRM----TKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTV 358
            Q  +  EY M   STG+RM     K K   R+ EI  +I + + + +    +    I I   V+QADGGTR+A I  A +AL DA             P++D V + S G L   PLLDL+Y EDS+   D+ V
Sbjct:   57 QGWLTAEYGMLPRSTGERMQREAAKGKQSGRTMEIQRLIGRALRSVLDLKKLGERTIQIDCDVIQADGGTRTASITGAFVALCDAVGYLRAEKIISENPIKDHVAAVSVGILKGQPLLDLDYAEDSSCDTDLNV 190          
BLAST of EY675364 vs. ExPASy Swiss-Prot
Match: RNPH_CHRVO (Ribonuclease PH OS=Chromobacterium violaceum GN=rph PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.782e-11
Identity = 50/134 (37.31%), Postives = 66/134 (49.25%), Query Frame = 2
Query:    2 QALVRCEYSMASFSTGDRMTKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTV 358
            Q  V  EY M   STG RM +     K   R+ EI  +I +++ A      +   QI I   V+QADGGTR+A I  A +AL DA             P+RD V + S G     P+LDL+Y+EDS    D+ V
Sbjct:   56 QGWVTAEYGMLPRSTGSRMRRESAAGKQSGRTQEIQRLIGRSLRAVTDLAKLGERQIVIDCDVIQADGGTRTASITGAYVALADAIRGLIDAGKLSATPLRDQVAAVSVGVYKGQPVLDLDYLEDSDCETDMNV 189          
BLAST of EY675364 vs. ExPASy Swiss-Prot
Match: RNPH_PASMU (Ribonuclease PH OS=Pasteurella multocida GN=rph PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.040e-11
Identity = 48/134 (35.82%), Postives = 67/134 (50.00%), Query Frame = 2
Query:    2 QALVRCEYSMASFSTGDRM----TKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDA--GI---------PMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTV 358
            Q  V  EY M   ST  RM     K K   R+ EI  +I +++ A +    +    I +   V+QADGGTR+A I  A +AL DA  G+         P++ +V + S G +   P+ DL YVEDSA   D+ V
Sbjct:   56 QGWVTAEYGMLPRSTHSRMQREAAKGKQGGRTLEIQRLIARSLRAMVDLEALGERSITLDCDVIQADGGTRTASITGACVALCDAIHGLVENGTLKVNPIKSLVAAISVGIVEGVPVCDLEYVEDSAAETDMNV 189          
BLAST of EY675364 vs. ExPASy Swiss-Prot
Match: RNPH_BIFLO (Ribonuclease PH OS=Bifidobacterium longum GN=rph PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 3.040e-11
Identity = 47/135 (34.81%), Postives = 69/135 (51.11%), Query Frame = 2
Query:   11 VRCEYSMASFSTGDRMTKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQD-------------AGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGI 364
            V  EYSM   +T +R  +     K   R+ EIS +I + +   I    +  +QI +   VLQADGGTR+A +  A +AL D             A   ++D V++ S G +N TP+LDL Y+EDS    D+ V +
Sbjct:   66 VTAEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDVLQADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVINGTPMLDLPYIEDSQAMTDMNVAM 200          
The following BLAST results are available for this feature:
BLAST of EY675364 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
RNPH_CELJU1.365e-1135.07Ribonuclease PH OS=Cellvibrio japonicus (strain Ue... [more]
RNPH_SHESR1.782e-1135.97Ribonuclease PH OS=Shewanella sp. (strain MR-7) GN... [more]
RNPH_SHESM1.782e-1135.97Ribonuclease PH OS=Shewanella sp. (strain MR-4) GN... [more]
RNPH_SHESA1.782e-1135.97Ribonuclease PH OS=Shewanella sp. (strain ANA-3) G... [more]
RNPH_SHEPA1.782e-1135.25Ribonuclease PH OS=Shewanella pealeana (strain ATC... [more]
RNPH_SHEHH1.782e-1135.25Ribonuclease PH OS=Shewanella halifaxensis (strain... [more]
RNPH_NITEC1.782e-1136.57Ribonuclease PH OS=Nitrosomonas eutropha (strain C... [more]
RNPH_CHRVO1.782e-1137.31Ribonuclease PH OS=Chromobacterium violaceum GN=rp... [more]
RNPH_PASMU3.040e-1135.82Ribonuclease PH OS=Pasteurella multocida GN=rph PE... [more]
RNPH_BIFLO3.040e-1134.81Ribonuclease PH OS=Bifidobacterium longum GN=rph P... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-009-F02-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675364 ID=EY675364; Name=EY675364; organism=Citrus sinensis; type=EST; length=1007bp
CCAAGCACTGGTACGCTGTGAGTACAGCATGGCTAGTTTTAGTACGGGGG
ATCGCATGACAAAACCCAAGGGTGACAGGCGATCGACAGAAATATCTTTG
GTTATTCGCCAGACTATGGAAGCGTGCATTTTGACCCACTTAATGCCTCG
TTCCCAGATAGATATTTTTGTACAAGTTCTCCAAGCAGATGGAGGGACAA
GATCCGCATGTATTAATGCCGCAACATTAGCCCTTCAAGATGCTGGTATT
CCAATGCGCGATATTGTTACTTCATGTAGTGCTGGATACCTCAATAGCAC
TCCTCTTCTTGATTTGAATTATGTTGAAGATAGTGCTGGAGGCCCTGATG
TCACTGTAGGTATTTTACCTACATTGGACAAAAGTTACTCTTCTTCAGAT
GGATGCCAAGTTACCCACAAATACCTTTGAAAATGTCATGCAACTTGCAA
TTGAAGGCTGTAAAGCAGTGGCAAATTACATTCGAAGAAGTATTACTAGA
GAATACCAAGCAGTTGGAATGCCCCCGGGGGTTTAGAAAAAAAGTCCTTG
GGCAGGGGATACGGAATGGGAAAGGTTTACTCCAAACCAACCCCGGGTCC
TTTAAAAGCATGGTTGGCCTTTATTCCCATTTTTTGTTGGGGAAAAATTT
TTATATACACCCGAAATACCCCCTGGGGTGGAATTTGGTTGGGGGCACAT
ATTAAAATTTTTTGGGTTGGGGGGCCGCCCGGGGAAAACGCAATTTTCAA
AGAGTGACCAATGGAAAAAAATATCTATTATTTTTCCCCCGCATTTTTTA
AAAATTGGAAAAATTTTCTGTGTGTTTTTTTTTTTTTTTTGTCCCGGGGG
GAATAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAGAGAAAATAAA
AGAAAAAAAAAAAAAATAAAAAAGAAAAAAGGGGGGGCGGGGGGCGGCAC
ACCCACTTGAAAGGAAAAGTGACACACGAAGACACTTGTCTGAAAAATCT
GACACGA
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