EY675319

Overview
NameEY675319
Unique NameEY675319
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1037
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY675319 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 7.502e-13
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:  142 AFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLYDHIADPVANN 324
            AFDPLG + DP +F ELKVKE+KNGRLA+ ++ GF V Q+   G GP+ENL  H+ADP  NN
Sbjct:  172 AFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNN 233
[Close]
BLAST of EY675319 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.413e-11
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:  145 FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPV 315
            FDPLGLA DP++ A+L++ E+K+ RLAM +  GF VQA  TGKGP+ N   H++DP+
Sbjct:  223 FDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPL 279
[Close]
BLAST of EY675319 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 9.171e-11
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:  145 FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPV 315
            FDPLGLA DP + A+L++ E+K+ RLAM    GF VQA  TGKGP+ N   H++DP+
Sbjct:  220 FDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPL 276
The following BLAST results are available for this feature:
BLAST of EY675319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB11_SOLLC7.502e-1359.68Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB4A_ARATH2.413e-1154.39Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH9.171e-1154.39Chlorophyll a-b binding protein CP29.2, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-009-A08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675319 ID=EY675319; Name=EY675319; organism=Citrus sinensis; type=EST; length=1037bp
CTTGGCAACCCCAACCTCACTCATGCTCAGAGCATTTTGGCTATCTGGGC
CTGCCAGGTCGTGCTTATGGGTTTTGTTGAAGGATACAGAATTGGTGGCG
GTCCTCTTGGTGAAGGACTTGACCCACTTTACCCTGGTGGTGCTTTTGAC
CCACTTGGTTTGGCTGATGACCCCGATCAATTTGCTGAGTTGAAGGTCAA
GGAGCTCAAGAATGGCCGTCTGGCTATGTTCTCCATGTTTGGATTCTTTG
TTCAGGCTATTGTCACTGGGAAGGGTCCAATTGAGAACCTCTACGACCAC
ATTGCTGATCCTGTGGCCAACAATGCCTGGGCTTATGCCACTAACTTTGT
TCCCGGAAAGTAAAGAAACTCATTGACTTTGATGGTGTCTTTTTCAGCTG
TAACATTATTCTATGTATCGTATGTGCTTTTGTGGAAAACTCTGTCATGG
ACTTATTAGTAACTCTGTAATGTTACCCTTAAAAATGCTATGCTCCTGAT
CTTTTATTTCCATCAAAATTTCAAAAAAAAAAAAAAAAAAAGGGGCGGCC
CCCCCTAGAGGATCCCAGCCTTATCTACGCCTTGCAGGCGACGTCCATAG
CTCCTTCCTAAGTGGTCCCCCAAAATTCAATTCCCGGGCCCCTCTTTTTT
CCAACGTCCTTGGCCTGGGGAAAACCCTTGGGCTTACCCACACTTAAACC
CCCTTTGGCCCCAAATCCCCCCCCTTTTTCCCCCCGCGGGGCCATAAATA
ACCAAAAAAAGGCCCCCCCCCCCATCTCCCCCTTCCCCAACATTTTGTGC
CCCCCCCGGTAAAAGGGGGGAAAAGGGGGCCCCCCCCCCGCGGAAACGGG
CCGCCTTAAAGACCCCGGGGGGGGGGGTGGGGGGGGGGTATACGCCAAAA
CGCGGTGGGGGACCAGTCAATACCATTTTGCACGCGCCCCGCCCTCAATT
AGCCCCCCCCCCTCACCTTTTTTTTGCTTTTTTTGTCTTATCTCTTCTTT
TCTTTTTTTTTATTCGCCGCACCCAAATAATTTTTAT
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