EY675312

Overview
NameEY675312
Unique NameEY675312
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1025
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.061e-31
Identity = 64/116 (55.17%), Postives = 82/116 (70.69%), Query Frame = 2 
Query:    5 RPAMLEALFCVFPVIFSQKGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            R AML AL CVFP +F++ G+   +A WFKAG  IFS+ GL YLGNP  + A +ILAIWAC+  LMG VE Y + GG  G+ + PLYPGG++DP   A++P+ FAELK  E+ NGR
Sbjct:  105 RWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGR 220

HSP 2 Score: 25.0238 bits (53), Expect = 4.061e-31
Identity = 13/30 (43.33%), Postives = 17/30 (56.67%), Query Frame = 3 
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKD 443
            LAM S+ GF V AI   K PL+   + + D
Sbjct:  221 LAMFSMFGFFVQAIVTGKGPLENLADHLAD 250
[Close]
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.065e-31
Identity = 66/117 (56.41%), Postives = 82/117 (70.09%), Query Frame = 2 
Query:    2 TRPAMLEALFCVFPVIFSQKGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            +R AML AL CVFP + S+ G+   +A WFKAG+ IFS+ GL YLGNP  + A +ILAIWAC+  LMG VE Y I GG  G+   P+YPGG++DP   AD+P+ FAELK  EL NGR
Sbjct:   92 SRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGR 208

HSP 2 Score: 25.0238 bits (53), Expect = 4.065e-31
Identity = 13/30 (43.33%), Postives = 17/30 (56.67%), Query Frame = 3 
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKD 443
            LAM S+ GF V AI   K PL+   + + D
Sbjct:  209 LAMFSMFGFFVQAIVTGKGPLENLADHLAD 238
[Close]
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.886e-31
Identity = 65/116 (56.03%), Postives = 82/116 (70.69%), Query Frame = 2 
Query:    5 RPAMLEALFCVFPVIFSQKGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            R AML AL CVFP + ++ G+   +A WFKAG+ IFS+ GL YLGNP  + A +ILAIWAC+  LMG VE Y I GG  G+ + PLYPGG++DP   AD+P+ FAELK  E+ NGR
Sbjct:  105 RWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGR 220

HSP 2 Score: 25.0238 bits (53), Expect = 6.886e-31
Identity = 13/30 (43.33%), Postives = 17/30 (56.67%), Query Frame = 3 
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKD 443
            LAM S+ GF V AI   K PL+   + + D
Sbjct:  221 LAMFSMFGFFVQAIVTGKGPLENLADHLAD 250
[Close]
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.928e-31
Identity = 65/114 (57.02%), Postives = 80/114 (70.18%), Query Frame = 2 
Query:   11 AMLEALFCVFPVIFSQKGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            AML AL CVFP + S+ G+   +A WFKAG+ IFS+ GL YLGNP  + A +ILAIWAC+  LMG VE Y I GG  G+   P+YPGG++DP   AD+P+ FAELK  EL NGR
Sbjct:   46 AMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGR 159

HSP 2 Score: 25.0238 bits (53), Expect = 6.928e-31
Identity = 13/30 (43.33%), Postives = 17/30 (56.67%), Query Frame = 3 
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKD 443
            LAM S+ GF V AI   K PL+   + + D
Sbjct:  160 LAMFSMFGFFVQAIVTGKGPLENLADHLAD 189
[Close]
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.967e-31
Identity = 65/116 (56.03%), Postives = 82/116 (70.69%), Query Frame = 2 
Query:    5 RPAMLEALFCVFPVIFSQKGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            R AML AL CVFP + ++ G+   +A WFKAG+ IFS+ GL YLGNP  + A +ILAIWAC+  LMG VE Y I GG  G+ + PLYPGG++DP   AD+P+ FAELK  E+ NGR
Sbjct:  105 RWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGR 220

HSP 2 Score: 25.0238 bits (53), Expect = 8.967e-31
Identity = 13/30 (43.33%), Postives = 17/30 (56.67%), Query Frame = 3 
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKD 443
            LAM S+ GF V AI   K PL+   + + D
Sbjct:  221 LAMFSMFGFFVQAIVTGKGPLENLADHLAD 250
[Close]
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.967e-31
Identity = 64/116 (55.17%), Postives = 82/116 (70.69%), Query Frame = 2 
Query:    5 RPAMLEALFCVFPVIFSQKGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            R AML AL CVFP + ++ G+   +A WFKAG+ IFS+ GL YLGNP  + A +ILAIWAC+  LMG VE Y + GG  G+ + PLYPGG++DP   AD+P+ FAELK  E+ NGR
Sbjct:  105 RWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGR 220

HSP 2 Score: 25.0238 bits (53), Expect = 8.967e-31
Identity = 13/30 (43.33%), Postives = 17/30 (56.67%), Query Frame = 3 
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKD 443
            LAM S+ GF V AI   K PL+   + + D
Sbjct:  221 LAMFSMFGFFVQAIVTGKGPLENLADHLAD 250
[Close]
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.521e-30
Identity = 64/116 (55.17%), Postives = 80/116 (68.97%), Query Frame = 2 
Query:    5 RPAMLEALFCVFPVIFSQKGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            R AML AL CVFP + ++ G+   +A WFKAG+ IFSD GL YLGNP  + A ++LAIWAC+  LMG VE Y I GG  G+ + PLYPGG++DP   A+ P  FAELK  E+ NGR
Sbjct:  104 RWAMLGALGCVFPELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLAERPQAFAELKVKEIKNGR 219

HSP 2 Score: 25.7942 bits (55), Expect = 1.521e-30
Identity = 14/30 (46.67%), Postives = 17/30 (56.67%), Query Frame = 3 
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKD 443
            LAM S+ GF V AI   K PL+   + I D
Sbjct:  220 LAMFSMFGFFVQAIVTGKGPLEDLADHIAD 249
[Close]
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.521e-30
Identity = 65/116 (56.03%), Postives = 80/116 (68.97%), Query Frame = 2 
Query:    5 RPAMLEALFCVFPVIFSQKGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            R AML AL CVFP + ++ G+   +A WFKAG+ IFS+ GL YLGNP  I A +ILAIWAC+  LMG VE Y I GG  G+ + PLYPGG++DP   AD+P+ F ELK  EL  GR
Sbjct:  103 RWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFGELKVKELKKGR 218

HSP 2 Score: 26.5646 bits (57), Expect = 1.521e-30
Identity = 14/30 (46.67%), Postives = 18/30 (60.00%), Query Frame = 3 
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKD 443
            LAM+S+ GF V AI   K PL+   + I D
Sbjct:  219 LAMLSMFGFFVQAIVTGKGPLENLADHIAD 248
[Close]
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.980e-30
Identity = 66/117 (56.41%), Postives = 82/117 (70.09%), Query Frame = 2 
Query:    2 TRPAMLEALFCVFPVIFSQKGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            +R AML AL CVFP + S+ G+   +A WFKAG+ IFS+ GL YLGNP  + A +ILAIWA +  LMG VE Y I GG  G+ + PLYPGG++DP   AD+P+ FAELK  EL NGR
Sbjct:  105 SRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGR 221

HSP 2 Score: 25.409 bits (54), Expect = 1.980e-30
Identity = 13/30 (43.33%), Postives = 17/30 (56.67%), Query Frame = 3 
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKD 443
            LAM S+ GF V AI   K PL+   + + D
Sbjct:  222 LAMFSMFGFFVQAIVTGKGPLENLADHLSD 251
[Close]
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.980e-30
Identity = 65/116 (56.03%), Postives = 81/116 (69.83%), Query Frame = 2 
Query:    5 RPAMLEALFCVFPVIFSQKGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            R AML AL CVFP I S+ G+   +A WFKAG+ IFS+ GL YLGNP  I A +ILA+WA +  LMG +E Y +GGG  G+ L  +YPGGA+DP   AD+P+ FAELK  E+ NGR
Sbjct:  103 RWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGR 218

HSP 2 Score: 24.2534 bits (51), Expect = 1.980e-30
Identity = 13/33 (39.39%), Postives = 18/33 (54.55%), Query Frame = 3 
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKDTEA 452
            LAM S+ GF V AI   K P++   + + D  A
Sbjct:  219 LAMFSMFGFFVQAIVTGKGPIENLFDHVADPVA 251
The following BLAST results are available for this feature:
BLAST of EY675312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CB23_PETSP4.061e-3155.17Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB21_CUCSA4.065e-3156.41Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2G_SOLLC6.886e-3156.03Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB22_CUCSA6.928e-3157.02Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB2A_SPIOL8.967e-3156.03Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB25_PETSP8.967e-3155.17Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB21_WHEAT1.521e-3055.17Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_MAIZE1.521e-3056.03Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB28_PEA1.980e-3056.41Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_TOBAC1.980e-3056.03Chlorophyll a-b binding protein 36, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-008-H12-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675312 ID=EY675312; Name=EY675312; organism=Citrus sinensis; type=EST; length=1025bp
CACGCGTCCGGCCATGCTTGAAGCTCTCTTCTGCGTCTTCCCTGTAATCT
TCTCCCAAAAAGGACTCCACTTAAACAAAGCAGCTTGGTTCAAGGCTGGC
ACATCTATATTCTCTGACAGTGGCCTTCACTATCTAGGCAACCCCTAGCA
CATTCAAGCCTCCAACATTTTGGCTATCTGGGCCTGCCGGGATGAGCTTA
TGGGTTTTGTTGAATGATACTAAATTGGTGGCGGTAATCCTGGTAAACGA
CTTCACCCTCTTTACCCTGGTGGTGCTTATGACCCAGGTGTTTTCGCGGA
TAATCCCGATAAATTTGCTGAGTTGAAGGACAACGAGCTCAATAATGGCA
GATCTGGCTATGATCTCATTGTTAGGATTCCTTGTCCACGCAATTGACAA
TAGAAAGATACCATTAAAATGCGCGAGAGAACCCATTAAAGATACTGAGG
CCCAAGAATGCAAGTGCTAAAACTTTTAAAATAAATTCCAAGGAAGCTTA
GAAAACTTAAGAAATGAAAGTAGTCCTTTCTACATCTAAAAAAACTTAAT
CAAGATAACCTAAGAGGGCAATCAAAGTAAAGCCATAAACCTTGAATCAT
GTAAAAAAAACACGATAAGGGTAACGAATAAACAAGGTTATAGATACCAA
ATTATTTCCATTTACGAAAAATTGCAAAAAAATACAATTATAAAAAAAAA
TTAAGTAAAAAACTACCAAAAGGAAAAGTAAAATAAAATAAAGGAAAGAT
AAAAGAAAAAGATAAAAAAAGAAAAAAAAAAAAACAAGAGAGGGAGAGAG
CAGAGACTGAGCAAAGAAAAAAGAAAGTACAGAGAAAACAAAAAGAGTAA
AAAAAGAAAGTAAAGAAATATAAAGGAACTAGAGCACACAATAAAACAAA
ATGTAACAACATATAATCAAGCTTGTGAAACGAACAACCAAAGCATGAGG
AAGAAAATAGATATGGGACAAAAACGAGAAAATAAGAAGTCAAGAAATGA
TCAAATAGAATGATATTAGGATAAC
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