EY675312

Overview
NameEY675312
Unique NameEY675312
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1025
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.980e-30
Identity = 64/116 (55.17%), Postives = 82/116 (70.69%), Query Frame = 2 
Query:    5 RPAMLEALFCVFPVIFSQKGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            R AML AL CVFP + ++ G+   +A WFKAG+ IFS+ GL YLGNP  + A +ILAIWAC+  LMG VE Y I GG  G+ + PLYPGG++DP   A++P+ FAELK  E+ NGR
Sbjct:  103 RWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGR 218

HSP 2 Score: 25.0238 bits (53), Expect = 1.980e-30
Identity = 13/30 (43.33%), Postives = 17/30 (56.67%), Query Frame = 3 
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKD 443
            LAM S+ GF V AI   K PL+   + + D
Sbjct:  219 LAMFSMFGFFVQAIVTGKGPLENLADHLAD 248
[Close]
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.578e-30
Identity = 63/116 (54.31%), Postives = 82/116 (70.69%), Query Frame = 2 
Query:    5 RPAMLEALFCVFPVIFSQKGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            R AML AL CVFP + ++ G+   +A WFKAG+ IFS+ GL YLGNP  + A +ILAIWAC+  LMG VE Y + GG  G+ + PLYPGG++DP   A++P+ FAELK  E+ NGR
Sbjct:  105 RWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGR 220

HSP 2 Score: 25.0238 bits (53), Expect = 2.578e-30
Identity = 13/30 (43.33%), Postives = 17/30 (56.67%), Query Frame = 3 
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKD 443
            LAM S+ GF V AI   K PL+   + + D
Sbjct:  221 LAMFSMFGFFVQAIVTGKGPLENLADHLAD 250
[Close]
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.578e-30
Identity = 66/117 (56.41%), Postives = 82/117 (70.09%), Query Frame = 2 
Query:    2 TRPAMLEALFCVFPVIFSQKGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            +R AML AL CVFP + S+ G+   +A WFKAG+ IFS+ GL YLGNP  + A +ILAIWA +  LMG VE Y I GG  G+ + PLYPGG++DP   AD+P+ FAELK  EL NGR
Sbjct:  106 SRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGR 222

HSP 2 Score: 25.0238 bits (53), Expect = 2.578e-30
Identity = 13/30 (43.33%), Postives = 17/30 (56.67%), Query Frame = 3 
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKD 443
            LAM S+ GF V AI   K PL+   + + D
Sbjct:  223 LAMFSMFGFFVQAIVTGKGPLENLADHLAD 252
[Close]
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.579e-30
Identity = 65/116 (56.03%), Postives = 79/116 (68.10%), Query Frame = 2 
Query:    5 RPAMLEALFCVFPVIFSQKGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            R AML AL CVFP + ++ GL   +A WFKAG  IFS+ GL Y GNP  I A +ILAIWAC+  LMG +E Y +GGG  G+ L PL PGGA+DP   AD+P+  AELK  E+ NGR
Sbjct:  104 RWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPLGLADDPEACAELKVKEIKNGR 219

HSP 2 Score: 24.2534 bits (51), Expect = 2.579e-30
Identity = 13/33 (39.39%), Postives = 18/33 (54.55%), Query Frame = 3 
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKDTEA 452
            LAM S+ GF V AI   K P++   + + D  A
Sbjct:  220 LAMFSMFGFFVQAIVTGKGPIENLYDHLADPVA 252
[Close]
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.579e-30
Identity = 63/117 (53.85%), Postives = 82/117 (70.09%), Query Frame = 2 
Query:    2 TRPAMLEALFCVFPVIFSQKGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            +R AML AL CVFP + ++ G+   +A WFKAG+ IFS+ GL YLGNP  I A +ILAIWAC+  LMG +E Y + GG  G+ + PLYPGG +DP   AD+P+ FA++K  EL NGR
Sbjct:  102 SRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVDPLYPGGTFDPLGLADDPEAFADVKVKELKNGR 218

HSP 2 Score: 25.0238 bits (53), Expect = 2.579e-30
Identity = 13/30 (43.33%), Postives = 17/30 (56.67%), Query Frame = 3 
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKD 443
            LAM S+ GF V AI   K PL+   + + D
Sbjct:  219 LAMFSMFGFFVQAIVTGKGPLENLADHLAD 248
[Close]
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.579e-30
Identity = 63/116 (54.31%), Postives = 82/116 (70.69%), Query Frame = 2 
Query:    5 RPAMLEALFCVFPVIFSQKGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            R AML AL CVFP + ++ G+   +A WFKAG+ IFS+ GL YLGNP  + A +ILAIWAC+  LMG VE Y + GG  G+ + PLYPGG++DP   A++P+ FAELK  E+ NGR
Sbjct:  104 RWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGR 219

HSP 2 Score: 25.0238 bits (53), Expect = 2.579e-30
Identity = 13/30 (43.33%), Postives = 17/30 (56.67%), Query Frame = 3 
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKD 443
            LAM S+ GF V AI   K PL+   + + D
Sbjct:  220 LAMFSMFGFFVQAIVTGKGPLENLADHLAD 249
[Close]
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.579e-30
Identity = 66/117 (56.41%), Postives = 82/117 (70.09%), Query Frame = 2 
Query:    2 TRPAMLEALFCVFPVIFSQKGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            +R AML AL CVFP + ++ G+   +A WFKAG+ IFS+ GL YLGNP  I A +ILAIWA +  LMG VE Y I GG  G+ + PLYPGGA+DP   AD+P+ FAELK  E+ NGR
Sbjct:  102 SRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGR 218

HSP 2 Score: 25.0238 bits (53), Expect = 2.579e-30
Identity = 13/30 (43.33%), Postives = 17/30 (56.67%), Query Frame = 3 
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKD 443
            LAM S+ GF V AI   K PL+   + + D
Sbjct:  219 LAMFSMFGFFVQAIVTGKGPLENLADHLAD 248
[Close]
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.358e-30
Identity = 63/116 (54.31%), Postives = 82/116 (70.69%), Query Frame = 2 
Query:    5 RPAMLEALFCVFPVIFSQKGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            R AML AL CVFP + ++ G+   +A WFKAG+ IFS+ GL YLGNP  + A +ILAIWAC+  LMG VE Y + GG  G+ + PLYPGG++DP   A++P+ FAELK  E+ NGR
Sbjct:  103 RWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGR 218

HSP 2 Score: 25.0238 bits (53), Expect = 3.358e-30
Identity = 13/30 (43.33%), Postives = 17/30 (56.67%), Query Frame = 3 
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKD 443
            LAM S+ GF V AI   K PL+   + + D
Sbjct:  219 LAMFSMFGFFVQAIVTGKGPLENLADHLAD 248
[Close]
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.358e-30
Identity = 62/116 (53.45%), Postives = 81/116 (69.83%), Query Frame = 2 
Query:    5 RPAMLEALFCVFPVIFSQKGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            R  ML AL CVFP +F++ G+   +A WFKAG+ IF + GL YLGNP  + A +ILAIWAC+  LMG VE Y + GG  G+ + PLYPGG++DP   AD+P+ FAEL+  E+ NGR
Sbjct:  104 RWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELEVKEIKNGR 219

HSP 2 Score: 25.0238 bits (53), Expect = 3.358e-30
Identity = 13/30 (43.33%), Postives = 17/30 (56.67%), Query Frame = 3 
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKD 443
            LAM S+ GF V AI   K PL+   + + D
Sbjct:  220 LAMFSMFGFFVQAIVTGKGPLENLADHLAD 249
[Close]
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 4.371e-30
Identity = 63/116 (54.31%), Postives = 81/116 (69.83%), Query Frame = 2 
Query:    5 RPAMLEALFCVFPVIFSQKGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            R AML AL CVFP + ++ G+   +A WFKAG+ IFS+ GL YLGNP  + A +ILAIWAC+  LMG +E Y + GG  G+   PLYPGG++DP   AD+P+ FAELK  E+ NGR
Sbjct:  105 RWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGR 220

HSP 2 Score: 23.8682 bits (50), Expect = 4.371e-30
Identity = 12/21 (57.14%), Postives = 13/21 (61.90%), Query Frame = 3 
Query:  354 LAMISLLGFLVHAIDNRKIPL 416
            LAM S+ GF V AI   K PL
Sbjct:  221 LAMFSMFGFFVQAIVTGKGPL 241
The following BLAST results are available for this feature:
BLAST of EY675312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CB2B_SOLLC1.980e-3055.17Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB24_TOBAC2.578e-3054.31Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB22_PEA2.578e-3056.41Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB21_PINTH2.579e-3056.03Chlorophyll a-b binding protein type I, chloroplas... [more]
CB29_MAIZE2.579e-3053.85Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB21_TOBAC2.579e-3054.31Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB21_ORYSJ2.579e-3056.41Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB22_TOBAC3.358e-3054.31Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB21_PETSP3.358e-3053.45Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB27_TOBAC4.371e-3054.31Chlorophyll a-b binding protein 7, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-008-H12-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675312 ID=EY675312; Name=EY675312; organism=Citrus sinensis; type=EST; length=1025bp
CACGCGTCCGGCCATGCTTGAAGCTCTCTTCTGCGTCTTCCCTGTAATCT
TCTCCCAAAAAGGACTCCACTTAAACAAAGCAGCTTGGTTCAAGGCTGGC
ACATCTATATTCTCTGACAGTGGCCTTCACTATCTAGGCAACCCCTAGCA
CATTCAAGCCTCCAACATTTTGGCTATCTGGGCCTGCCGGGATGAGCTTA
TGGGTTTTGTTGAATGATACTAAATTGGTGGCGGTAATCCTGGTAAACGA
CTTCACCCTCTTTACCCTGGTGGTGCTTATGACCCAGGTGTTTTCGCGGA
TAATCCCGATAAATTTGCTGAGTTGAAGGACAACGAGCTCAATAATGGCA
GATCTGGCTATGATCTCATTGTTAGGATTCCTTGTCCACGCAATTGACAA
TAGAAAGATACCATTAAAATGCGCGAGAGAACCCATTAAAGATACTGAGG
CCCAAGAATGCAAGTGCTAAAACTTTTAAAATAAATTCCAAGGAAGCTTA
GAAAACTTAAGAAATGAAAGTAGTCCTTTCTACATCTAAAAAAACTTAAT
CAAGATAACCTAAGAGGGCAATCAAAGTAAAGCCATAAACCTTGAATCAT
GTAAAAAAAACACGATAAGGGTAACGAATAAACAAGGTTATAGATACCAA
ATTATTTCCATTTACGAAAAATTGCAAAAAAATACAATTATAAAAAAAAA
TTAAGTAAAAAACTACCAAAAGGAAAAGTAAAATAAAATAAAGGAAAGAT
AAAAGAAAAAGATAAAAAAAGAAAAAAAAAAAAACAAGAGAGGGAGAGAG
CAGAGACTGAGCAAAGAAAAAAGAAAGTACAGAGAAAACAAAAAGAGTAA
AAAAAGAAAGTAAAGAAATATAAAGGAACTAGAGCACACAATAAAACAAA
ATGTAACAACATATAATCAAGCTTGTGAAACGAACAACCAAAGCATGAGG
AAGAAAATAGATATGGGACAAAAACGAGAAAATAAGAAGTCAAGAAATGA
TCAAATAGAATGATATTAGGATAAC
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