EY675312

Overview
NameEY675312
Unique NameEY675312
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1025
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 5.694e-30
Identity = 65/117 (55.56%), Postives = 82/117 (70.09%), Query Frame = 2
Query:    2 TRPAMLEALFCVFPVIFSQKGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            +R AML AL CVFP + ++ G+   +A WFKAG+ IFS+ GL YLGNP  I A +ILAIWA +  LMG VE Y I GG  G+ + PLYPGG++DP   AD+P+ FAELK  E+ NGR
Sbjct:   98 SRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGR 214          

HSP 2 Score: 25.0238 bits (53), Expect = 5.694e-30
Identity = 13/30 (43.33%), Postives = 17/30 (56.67%), Query Frame = 3
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKD 443
            LAM S+ GF V AI   K PL+   + + D
Sbjct:  215 LAMFSMFGFFVQAIVTGKGPLENLADHLAD 244          
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.650e-30
Identity = 62/116 (53.45%), Postives = 81/116 (69.83%), Query Frame = 2
Query:    5 RPAMLEALFCVFPVIFSQKGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            R AML AL CVFP + ++ G+   +A WFKAG+ IFS+ GL YLGNP  + A +ILAIWAC+  LMG VE Y + GG  G+ + PLYPGG++DP   A++P+ FAELK   + NGR
Sbjct:  105 RWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKHIKNGR 220          

HSP 2 Score: 25.0238 bits (53), Expect = 9.650e-30
Identity = 13/30 (43.33%), Postives = 17/30 (56.67%), Query Frame = 3
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKD 443
            LAM S+ GF V AI   K PL+   + + D
Sbjct:  221 LAMFSMFGFFVQAIVTGKGPLENLADHLAD 250          
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 9.654e-30
Identity = 66/117 (56.41%), Postives = 81/117 (69.23%), Query Frame = 2
Query:    2 TRPAMLEALFCVFPVIFSQKGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            +R AML AL CVFP + S+ G+   +A WFKAG+ IFS+ GL YLGNP  I A +ILAIWA +  LMG VE Y I GG  G+   P+YPGG++DP   AD+P+ FAELK  EL NGR
Sbjct:  100 SRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGR 216          

HSP 2 Score: 24.2534 bits (51), Expect = 9.654e-30
Identity = 12/22 (54.55%), Postives = 14/22 (63.64%), Query Frame = 3
Query:  354 LAMISLLGFLVHAIDNRKIPLK 419
            LAM S+ GF V AI   K PL+
Sbjct:  217 LAMFSMFGFFVQAIVTGKGPLE 238          
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.256e-29
Identity = 62/116 (53.45%), Postives = 79/116 (68.10%), Query Frame = 2
Query:    5 RPAMLEALFCVFPVIFSQKGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            R AML AL C+ P + ++ G+   +A WFKAG  IFS+ GL YLGNP  + A +ILAIWAC+  LMG VE Y + GG  G+   P+YPGG++DP   AD+PD FAELK  E+ NGR
Sbjct:  106 RWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGR 221          

HSP 2 Score: 25.7942 bits (55), Expect = 1.256e-29
Identity = 14/33 (42.42%), Postives = 18/33 (54.55%), Query Frame = 3
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKDTEA 452
            LAM S+ GF V AI   K PL+   + + D  A
Sbjct:  222 LAMFSMFGFFVQAIVTGKGPLENLNDHLADPVA 254          
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.635e-29
Identity = 63/117 (53.85%), Postives = 80/117 (68.38%), Query Frame = 2
Query:    2 TRPAMLEALFCVFPVIFSQKGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            +R AML AL CVFP + ++ G+   +A WFKAG  IFS+ GL YLG+P  I A +ILAIWAC+  LMG +E Y + GG  G+   P+YPGG +DP   AD+PD FAELK  E+ NGR
Sbjct:  115 SRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGR 231          

HSP 2 Score: 24.2534 bits (51), Expect = 1.635e-29
Identity = 12/30 (40.00%), Postives = 17/30 (56.67%), Query Frame = 3
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKD 443
            LAM S+ GF V AI   K P++   + + D
Sbjct:  232 LAMFSMFGFFVQAIVTGKGPIENLADHLAD 261          
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.635e-29
Identity = 63/116 (54.31%), Postives = 80/116 (68.97%), Query Frame = 2
Query:    5 RPAMLEALFCVFPVIFSQKGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            R AML AL CVFP + ++ G+   +A WFKAG  IFS+ GL YLGNP  + A +ILAIWAC+  LMG VE Y I GG  G+   P+YPGG++DP   A++P+ FAELK  E+ NGR
Sbjct:  112 RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKEIKNGR 227          

HSP 2 Score: 24.2534 bits (51), Expect = 1.635e-29
Identity = 12/30 (40.00%), Postives = 17/30 (56.67%), Query Frame = 3
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKD 443
            LAM S+ GF V AI   K P++   + + D
Sbjct:  228 LAMFSMFGFFVQAIVTGKGPIENLADHLAD 257          
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.131e-29
Identity = 62/116 (53.45%), Postives = 80/116 (68.97%), Query Frame = 2
Query:    5 RPAMLEALFCVFPVIFSQKGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            R AML AL CVFP + ++ G+   +A WFK G+ IFS+ GL YLGNP  + A +ILAIWAC+  LMG VE Y + GG  G+ + PLYPGG++DP   AD+ + FAELK  E+ NGR
Sbjct:  102 RWAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDAEAFAELKVKEIKNGR 217          

HSP 2 Score: 25.0238 bits (53), Expect = 2.131e-29
Identity = 13/30 (43.33%), Postives = 17/30 (56.67%), Query Frame = 3
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKD 443
            LAM S+ GF V AI   K PL+   + + D
Sbjct:  218 LAMFSMFGFFVQAIVTGKGPLENLADHLAD 247          
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.774e-29
Identity = 63/116 (54.31%), Postives = 80/116 (68.97%), Query Frame = 2
Query:    5 RPAMLEALFCVFPVIFSQKGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            R AML AL CVFP +F++ G+   +A W KAG+ IFS+ GL YLGNP  + A +ILAIWAC+  LMG VE Y + GG  G  + PLYPGG++DP   A++P+ FAELK  E  NGR
Sbjct:  105 RWAMLGALGCVFPELFARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAGGPLGVVVDPLYPGGSFDPLGLAEDPEAFAELKVKETKNGR 220          

HSP 2 Score: 24.2534 bits (51), Expect = 2.774e-29
Identity = 12/30 (40.00%), Postives = 17/30 (56.67%), Query Frame = 3
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKD 443
            LAM S+ GF + AI   K PL+   + + D
Sbjct:  221 LAMFSMFGFFIQAIVTGKGPLENLADHLVD 250          
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.612e-29
Identity = 62/116 (53.45%), Postives = 81/116 (69.83%), Query Frame = 2
Query:    5 RPAMLEALFCVFPVIFSQKGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            R AML AL CVFP + ++ G+   +A WFKAG+ IFS+ GL YLGNP  + A +ILAIWAC+  LMG VE Y + G   G+ + PLYPGG++DP   A++P+ FAELK  E+ NGR
Sbjct:  104 RWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGR 219          

HSP 2 Score: 24.2534 bits (51), Expect = 3.612e-29
Identity = 12/30 (40.00%), Postives = 17/30 (56.67%), Query Frame = 3
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKD 443
            LAM S+ GF V A+   K PL+   + + D
Sbjct:  220 LAMFSMFGFFVQALVTGKGPLENLADHLAD 249          
BLAST of EY675312 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.624e-29
Identity = 65/117 (55.56%), Postives = 81/117 (69.23%), Query Frame = 2
Query:    2 TRPAMLEALFCVFPVIFSQKGLHLNKAAWFKAGTSIFSDSGLHYLGNP*HIQASNILAIWACRDELMGFVE*Y*IGGGNPGKRLHPLYPGGAYDPGVFADNPDKFAELKDNELNNGR 352
            +R AML AL CVFP + S+ G+   +A WFKAG+ IFS+ GL YLGNP  + A +ILAIWA +  LMG VE Y I GG  G+ + PLYPGG++DP   A+ P+ FAELK  EL NGR
Sbjct:   65 SRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEVPEAFAELKVKELKNGR 181          

HSP 2 Score: 24.2534 bits (51), Expect = 3.624e-29
Identity = 13/30 (43.33%), Postives = 17/30 (56.67%), Query Frame = 3
Query:  354 LAMISLLGFLVHAIDNRKIPLKCAREPIKD 443
            LAM S+ GF V AI   K PL+   + + D
Sbjct:  182 LAMFSMFGFFVPAIVTGKGPLENLADHLAD 211          
The following BLAST results are available for this feature:
BLAST of EY675312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CB22_ORYSJ5.694e-3055.56Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB25_TOBAC9.650e-3053.45Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB23_SOYBN9.654e-3056.41Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB2_PHYPA1.256e-2953.45Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2A_PINSY1.635e-2953.85Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB2B_PINSY1.635e-2954.31Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB22_HORVU2.131e-2953.45Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_PETSP2.774e-2954.31Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB25_NICPL3.612e-2953.45Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB21_PEA3.624e-2955.56Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-008-H12-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675312 ID=EY675312; Name=EY675312; organism=Citrus sinensis; type=EST; length=1025bp
CACGCGTCCGGCCATGCTTGAAGCTCTCTTCTGCGTCTTCCCTGTAATCT
TCTCCCAAAAAGGACTCCACTTAAACAAAGCAGCTTGGTTCAAGGCTGGC
ACATCTATATTCTCTGACAGTGGCCTTCACTATCTAGGCAACCCCTAGCA
CATTCAAGCCTCCAACATTTTGGCTATCTGGGCCTGCCGGGATGAGCTTA
TGGGTTTTGTTGAATGATACTAAATTGGTGGCGGTAATCCTGGTAAACGA
CTTCACCCTCTTTACCCTGGTGGTGCTTATGACCCAGGTGTTTTCGCGGA
TAATCCCGATAAATTTGCTGAGTTGAAGGACAACGAGCTCAATAATGGCA
GATCTGGCTATGATCTCATTGTTAGGATTCCTTGTCCACGCAATTGACAA
TAGAAAGATACCATTAAAATGCGCGAGAGAACCCATTAAAGATACTGAGG
CCCAAGAATGCAAGTGCTAAAACTTTTAAAATAAATTCCAAGGAAGCTTA
GAAAACTTAAGAAATGAAAGTAGTCCTTTCTACATCTAAAAAAACTTAAT
CAAGATAACCTAAGAGGGCAATCAAAGTAAAGCCATAAACCTTGAATCAT
GTAAAAAAAACACGATAAGGGTAACGAATAAACAAGGTTATAGATACCAA
ATTATTTCCATTTACGAAAAATTGCAAAAAAATACAATTATAAAAAAAAA
TTAAGTAAAAAACTACCAAAAGGAAAAGTAAAATAAAATAAAGGAAAGAT
AAAAGAAAAAGATAAAAAAAGAAAAAAAAAAAAACAAGAGAGGGAGAGAG
CAGAGACTGAGCAAAGAAAAAAGAAAGTACAGAGAAAACAAAAAGAGTAA
AAAAAGAAAGTAAAGAAATATAAAGGAACTAGAGCACACAATAAAACAAA
ATGTAACAACATATAATCAAGCTTGTGAAACGAACAACCAAAGCATGAGG
AAGAAAATAGATATGGGACAAAAACGAGAAAATAAGAAGTCAAGAAATGA
TCAAATAGAATGATATTAGGATAAC
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