EY675307

Overview
NameEY675307
Unique NameEY675307
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1028
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.540e-18
Identity = 48/88 (54.55%), Postives = 56/88 (63.64%), Query Frame = 1
Query:  280 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ FSK +  E+IH+RWAMLGA G + PE   + G   G EAVWFK
Sbjct:   53 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFK 136          
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.627e-18
Identity = 47/88 (53.41%), Postives = 56/88 (63.64%), Query Frame = 1
Query:  280 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK
Sbjct:   48 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFK 131          
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 2.627e-18
Identity = 47/88 (53.41%), Postives = 55/88 (62.50%), Query Frame = 1
Query:  280 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            WYGPDR  +L        + P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   K G   G EAVWFK
Sbjct:   48 WYGPDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFG-EAVWFK 131          
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.431e-18
Identity = 47/88 (53.41%), Postives = 55/88 (62.50%), Query Frame = 1
Query:  280 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK
Sbjct:   51 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFK 134          
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.431e-18
Identity = 47/88 (53.41%), Postives = 55/88 (62.50%), Query Frame = 1
Query:  280 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE F + G   G EAVW K
Sbjct:   51 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFG-EAVWLK 134          
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.431e-18
Identity = 47/88 (53.41%), Postives = 56/88 (63.64%), Query Frame = 1
Query:  280 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            WYGPDR  +L        +IP YLTGE PGDYG+D  GLS  P+ F++ +  E+IH+RWAMLGA G   PE   K G   G EAVWFK
Sbjct:   49 WYGPDRPKYLGPF---SEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFG-EAVWFK 132          
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.481e-18
Identity = 48/89 (53.93%), Postives = 57/89 (64.04%), Query Frame = 1
Query:  277 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            ++YGP+R  +L  G    +  P YLTGE PGDYG+D  GLS  P+ F +Y+  ELIHARWAMLGA G   PE   K G   G EAVWFK
Sbjct:   35 EFYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFG-EAVWFK 120          
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.481e-18
Identity = 47/88 (53.41%), Postives = 55/88 (62.50%), Query Frame = 1
Query:  280 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK
Sbjct:   51 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFK 134          
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.481e-18
Identity = 47/88 (53.41%), Postives = 55/88 (62.50%), Query Frame = 1
Query:  280 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK
Sbjct:   49 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFK 132          
BLAST of EY675307 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.481e-18
Identity = 47/88 (53.41%), Postives = 55/88 (62.50%), Query Frame = 1
Query:  280 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFYKFGANCGPEAVWFK 543
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK
Sbjct:   51 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFK 134          
The following BLAST results are available for this feature:
BLAST of EY675307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB22_PEA1.540e-1854.55Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB23_APIGR2.627e-1853.41Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_SILPR2.627e-1853.41Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB27_TOBAC3.431e-1853.41Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB22_PETSP3.431e-1853.41Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB215_PEA3.431e-1853.41Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB2_CHLRE4.481e-1853.93Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2G_SOLLC4.481e-1853.41Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB2B_SOLLC4.481e-1853.41Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB2A_SPIOL4.481e-1853.41Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-008-H07-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675307 ID=EY675307; Name=EY675307; organism=Citrus sinensis; type=EST; length=1028bp
CCACGCGTCCGATTTCATTTCTCTAACCATAGAAGCAGCAGCAGCAACAC
TCTGAAGATGGCTTCATTGGCAGCATCGTCCACTCCTGCTGCCTCCATTG
GAGCTAAGGAGATGCTTGGCAACCCTCTCAATGTCAGCAGTGCTGTTAGG
ACTTCAGCTCCAGGTGCATCAAACCCTTCTACTTTCAAGCCCGTTGCTCT
CTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCGTCGCCG
TCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTATGGTCCTGACCGAAGA
ATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTGAGATCCCTGAGTACTT
GACCGGAGAAGTTCCCGGAGACTATGGTTACGATCCTTTTGGTCTCAGCA
AGAAACCAGACGACTTCAGCAAATATCAGGCATATGAATTGATTCATGCC
AGATGGGCCATGCTTGGTGCTGCTGGTTTCATCATTCCTGAAGCCTTTTA
CAAGTTTGGTGCTAACTGTGGTCCTGAAGCTGTCTGGTTCAAGGTTAATT
TGCATTTTTCCAGATCGTTGCTCCTTTATGTCGTGTATTTGCTTATGGTT
TTGTAATGTCCTGGTTTTGCAAACTGGAACTCTACTTCTTGATGGAAAAC
CTTTGAACACTTTCGGAAAAAACATCCCAATCACCCTTGGTTTTTGCTGT
CATTGGGAAAATTGGTCTTGAAGGGGGGGGCTAAAAATTAAAAAACCCCC
ACGGGGTTTGGATTTGGAGGACAAACCTTCCCCCCGGGGGGGCCATTTTA
ACCCCCTGGGATTTATAAAAGGGGTCCTCGAACCCATTTTCCTCTGTTTA
AAAAGTGAAGAGAAATCAAAAAAAGGGGAAAAATTGGCCATTTTTTGCCC
ACAGCTCTTGGTTTTTTTTTCCCCCCCCCCTTTTTAGTCCACGGGGGAGG
GAGGGGGCCGTTTTGTAAAAAAAACTTGGGTTCAAACCAACTCCTCTCAG
TGATAAATCTCTCTTTTGTTTCCGATCA
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