EY675147

Overview
NameEY675147
Unique NameEY675147
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1033
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_CAMC1 (Serine hydroxymethyltransferase OS=Campylobacter concisus (strain 13826) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 3.211e-32
Identity = 71/137 (51.82%), Postives = 91/137 (66.42%), Query Frame = 3
Query:   96 SLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKI 506
            SL++ D +I+DL+  E +RQC  +E+IASENFT   V+E +GS LTNKY+EG PG RYYGG EF+DEIE +   R  + F  +      NVQP SGS AN   Y A+L P D+I+G+DL  GGHLTHG   S   K+
Sbjct:    2 SLQSYDKDIYDLVNLELKRQCDHLEMIASENFTYPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIEQIAIDRCKELFGCE----FANVQPNSGSQANQGVYGALLNPGDKILGMDLSHGGHLTHGAKVSSSGKM 134          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_THERP (Serine hydroxymethyltransferase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 4.193e-32
Identity = 74/123 (60.16%), Postives = 87/123 (70.73%), Query Frame = 3
Query:  111 DPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            D E+ + I  E+RRQ R IELIASENFTS AV+ A+GS LTNKY+EG PG RYYGG E +D +E L   RA Q F        VNVQP+SG+ AN AAY AVL+P DRI+G+ L  GGHLTHG
Sbjct:    9 DFEVAEAIACEERRQSRTIELIASENFTSPAVLAAVGSVLTNKYAEGYPGRRYYGGCECVDRVEELAIQRAKQLFGAP----HVNVQPHSGAQANMAAYFAVLQPGDRILGMSLQHGGHLTHG 127          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_PROM5 (Serine hydroxymethyltransferase OS=Prochlorococcus marinus (strain MIT 9515) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 4.193e-32
Identity = 73/128 (57.03%), Postives = 89/128 (69.53%), Query Frame = 3
Query:   96 SLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            +L+  DP I +LI  EK RQ   +ELIASENF S AV++A GS LTNKY+EG+P  RYYGG EF+DEIE L   RA Q F  D   W  NVQP+SG+ AN A + ++L P D I+G+DL  GGHLTHG
Sbjct:    6 NLKKSDPIISNLINSEKNRQETHLELIASENFASMAVMQAQGSVLTNKYAEGLPQKRYYGGCEFVDEIEELAIERAKQLFDAD---W-ANVQPHSGAQANAAVFLSLLNPGDTILGMDLSHGGHLTHG 129          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_OENOB (Serine hydroxymethyltransferase OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 4.193e-32
Identity = 73/133 (54.89%), Postives = 89/133 (66.92%), Query Frame = 3
Query:  108 VDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKI 506
            +DP++   +  E+ RQ   IEL+ASENF S AV +A GS LTNKYSEG PG RYYGGNE+ID  ENL   RA + F +       NVQP+SGS ANF AY A L P D+I+G++L SGGHLTHG   S   K+
Sbjct:    6 LDPQLAKAVSGEEERQRHNIELVASENFVSKAVRQAQGSVLTNKYSEGYPGKRYYGGNEYIDIAENLAIERAKELFGVS----YANVQPHSGSSANFEAYMAFLHPGDKILGMNLDSGGHLTHGASVSFSGKM 134          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_OCEIH (Serine hydroxymethyltransferase OS=Oceanobacillus iheyensis GN=glyA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 4.193e-32
Identity = 69/127 (54.33%), Postives = 90/127 (70.87%), Query Frame = 3
Query:   99 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            ++  D E+ + ++ EK RQ   IELIASENF + AV++A+GS LTNKY+EG PG RYYGG E +D +ENL R RA + F  D      NVQP+SG+ AN A Y+AVLEP D ++G++L  GGHLTHG
Sbjct:    4 VKQADTEVFEAMQAEKNRQQDKIELIASENFVTKAVMDAMGSILTNKYAEGYPGKRYYGGCEHVDVVENLARDRAKELFGAD----HANVQPHSGAQANMAVYSAVLEPGDTVLGMNLNHGGHLTHG 126          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_GEOBB (Serine hydroxymethyltransferase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 4.193e-32
Identity = 72/129 (55.81%), Postives = 89/129 (68.99%), Query Frame = 3
Query:   93 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            S LET DP + ++I +E  RQ   +ELIASENF S AV+EA GS LTNKY+EG PG RYYGG   +D +ENL   RA + F  D     VNVQP+SGS AN A Y +VL+P D ++G++L  GGHLTHG
Sbjct:    2 SVLETFDPAVAEVIRQETERQEYNLELIASENFVSPAVLEAQGSVLTNKYAEGYPGKRYYGGCHCVDVVENLAIDRAKELFGAD----HVNVQPHSGSQANMAVYFSVLKPGDTVLGMNLAHGGHLTHG 126          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_FRAP2 (Serine hydroxymethyltransferase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 4.193e-32
Identity = 75/144 (52.08%), Postives = 95/144 (65.97%), Query Frame = 3
Query:   93 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISGELRF 524
            +SL+  D EI D IE E +RQ   +ELIASEN+ S AV+EA GS LTNKY+EG  G RYYGG EF+D  E L   RA + F +D      NVQP+SGS AN A Y AVL+P D ++G+DL +GGHLTHG   +   KI   +++
Sbjct:    7 NSLKNTDKEIFDAIELEVKRQHEHVELIASENYASPAVMEAQGSQLTNKYAEGYHGKRYYGGCEFVDIAEKLAIERAQKLFGVD----YANVQPHSGSQANAAVYNAVLKPGDTVLGMDLGAGGHLTHGSKVNFSGKIYNSIQY 146          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_PROMM (Serine hydroxymethyltransferase OS=Prochlorococcus marinus (strain MIT 9313) GN=glyA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 5.477e-32
Identity = 73/130 (56.15%), Postives = 92/130 (70.77%), Query Frame = 3
Query:   90 NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            N++L   DP I  LI++E++RQ   +ELIASENFTS AV++A GS LTNKY+EG+P  RYYGG E +D IE L   RA + F      W  NVQP+SG+ ANFA + A+L+P D IMG+DL  GGHLTHG
Sbjct:   10 NAALTDSDPAIAGLIDQERQRQETHLELIASENFTSQAVMQAQGSVLTNKYAEGLPHKRYYGGCEHVDAIEELAIERAQRLF---GAAW-ANVQPHSGAQANFAVFLALLQPGDTIMGMDLSHGGHLTHG 135          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_PROM3 (Serine hydroxymethyltransferase OS=Prochlorococcus marinus (strain MIT 9303) GN=glyA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 5.477e-32
Identity = 73/130 (56.15%), Postives = 92/130 (70.77%), Query Frame = 3
Query:   90 NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            N++L   DP I  LI++E++RQ   +ELIASENFTS AV++A GS LTNKY+EG+P  RYYGG E +D IE L   RA + F      W  NVQP+SG+ ANFA + A+L+P D IMG+DL  GGHLTHG
Sbjct:   10 NAALTDSDPAIAGLIDQERQRQETHLELIASENFTSQAVMQAQGSVLTNKYAEGLPHKRYYGGCEHVDAIEELAIERARRLF---GAAW-ANVQPHSGAQANFAVFLALLQPGDTIMGMDLSHGGHLTHG 135          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_MYCMS (Serine hydroxymethyltransferase OS=Mycoplasma mycoides subsp. mycoides SC GN=glyA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 5.477e-32
Identity = 71/125 (56.80%), Postives = 88/125 (70.40%), Query Frame = 3
Query:  108 VDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGY 482
            + P I + + KE +RQ   IELIASEN+ S AV+E  GS LTNKY+EG PG RYYGG EFIDEIE+L    A + FH +      N+QP+SGS AN AAY A+LEP DR++ + L +GGHLTHGY
Sbjct:    5 ISPLIKESLNKELKRQQSHIELIASENYVSKAVLELNGSVLTNKYAEGYPGKRYYGGCEFIDEIESLGIQTAKELFHAE----HANIQPHSGSQANDAAYKALLEPKDRVVAMSLDAGGHLTHGY 125          
The following BLAST results are available for this feature:
BLAST of EY675147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_CAMC13.211e-3251.82Serine hydroxymethyltransferase OS=Campylobacter c... [more]
GLYA_THERP4.193e-3260.16Serine hydroxymethyltransferase OS=Thermomicrobium... [more]
GLYA_PROM54.193e-3257.03Serine hydroxymethyltransferase OS=Prochlorococcus... [more]
GLYA_OENOB4.193e-3254.89Serine hydroxymethyltransferase OS=Oenococcus oeni... [more]
GLYA_OCEIH4.193e-3254.33Serine hydroxymethyltransferase OS=Oceanobacillus ... [more]
GLYA_GEOBB4.193e-3255.81Serine hydroxymethyltransferase OS=Geobacter bemid... [more]
GLYA_FRAP24.193e-3252.08Serine hydroxymethyltransferase OS=Francisella phi... [more]
GLYA_PROMM5.477e-3256.15Serine hydroxymethyltransferase OS=Prochlorococcus... [more]
GLYA_PROM35.477e-3256.15Serine hydroxymethyltransferase OS=Prochlorococcus... [more]
GLYA_MYCMS5.477e-3256.80Serine hydroxymethyltransferase OS=Mycoplasma myco... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-006-F12-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675147 ID=EY675147; Name=EY675147; organism=Citrus sinensis; type=EST; length=1033bp
CCACGCGTCCGCATTTTCCCTTTTTTTCGTTTTCAGTGAATCCAGAAAAC
GGAAAAAAAGAAAAAATGGATCCAGTGAACGAGTGGGGCAACTCATCTCT
TGAAACCGTGGACCCAGAAATTCACGACCTGATCGAGAAAGAGAAGCGCC
GACAATGCCGCGGCATCGAGCTCATCGCCTCCGAGAACTTCACCTCCTTC
GCCGTTATCGAAGCCCTCGGCAGCGCCCTCACCAACAAATACTCAGAGGG
AATGCCCGGCAACCGTTACTACGGAGGCAACGAATTCATCGACGAGATCG
AGAATCTCTGCCGGTCGAGAGCTTTACAAACTTTCCATTTGGACCCCACC
CAGTGGGGTGTCAACGTTCAGCCTTACTCCGGCTCGCCGGCCAACTTCGC
CGCTTACACGGCGGTGCTCGAGCCTCATGACCGTATCATGGGGCTGGACT
TGCCGTCCGGAGGGCATTTGACTCATGGGTATTACACTTCTGGCGGGAAA
AAAATATCGGGCGAACTTCGATTTACTTCGAGAGCTTGCCGTACAAGGTG
GAATTCCAAATACTGGGTATATTGATTACAATAAGTTGGGAGGAAAAAAG
GCGTTGGAAATTTTTAGGCCAAAAGTTGATTATTTTGCGGGGGGGAGGGG
GTTTCCCAAGGGATGGGGAATATGGCTAATTTCAAAGCCGTTGGCTAATA
AAAGGGGGGGGCCCCTTTTGCCCGAGGGAAAAGGGGGCAAAAAGACAAGG
GGCTTGGGTGGGGGCCCAAGGAAGACAGGAAAACCCCTTTTGAATAAAAG
GTACATTAAGATCACAACCCCCGATACTCTCAAAAAAACATGGGGGGGGG
GCCCATCAGGGGCGAGGGGAGGAGTATTTTTTCACCCAGGAAAGGGGGGC
CAAAAAACACAAAGGACCAAAAGAGGGGGAGAGAAACACAAAAAGAGGGG
GGGGGGGAGAATCATAAAAAGGTGTCTGTAAAACATAAAACAGACTAAGT
ACTAGCATGAGCGTTTGAATGATGAGAATACTA
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