EY675147

Overview
NameEY675147
Unique NameEY675147
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1033
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYM_KLULA (Serine hydroxymethyltransferase, mitochondrial OS=Kluyveromyces lactis GN=SHM1 PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 2.541e-46
Identity = 83/137 (60.58%), Postives = 108/137 (78.83%), Query Frame = 3
Query:   99 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKIS 509
            ++ +DPE++D++ KE++RQ   I LI SENFTS +V++ LGS + NKYSEG PG RYYGGN+FID  E+LC+ RAL+ ++LDP  WGVNVQP SG+PAN  AY+AV+E +DR+MGLDLP GGHL+HGY    G KIS
Sbjct:   41 VQDIDPEMYDILTKERKRQKHSITLIPSENFTSKSVMDLLGSEMQNKYSEGYPGERYYGGNQFIDMAESLCQKRALELYNLDPQLWGVNVQPLSGAPANLYAYSAVMETNDRLMGLDLPHGGHLSHGYQLPSGTKIS 177          

HSP 2 Score: 22.3274 bits (46), Expect = 2.541e-46
Identity = 17/60 (28.33%), Postives = 30/60 (50.00%), Query Frame = 2
Query:  506 IGRTSIYFESLPYKVEFQILGILITISWEEKRRWKFLGQKLIILRGGGGFPRDGEYG*FQ 685
            I   S YF+++PY V+ Q  GI   I ++   +   L +  +I+ G   + R  +Y  F+
Sbjct:  176 ISYISKYFQTMPYHVDSQ-TGI---IDYDFLSKTSKLFRPKVIVAGASAYSRVLDYKRFK 231          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYM_CANAL (Serine hydroxymethyltransferase, mitochondrial OS=Candida albicans GN=SHM1 PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 9.622e-45
Identity = 86/137 (62.77%), Postives = 105/137 (76.64%), Query Frame = 3
Query:   90 NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGK 500
            + S++ VDPE+ D++ +E+ RQ   I LI SENFTS AV++ LGS + NKYSEG PG RYYGGNE ID+ E LC+ RAL+ F LDP+QWGVNVQP SG+PAN  AY+A+LE  DRIMGLDLP GGHL+HGY T   K
Sbjct:   36 SKSVQDVDPEMADILNQERTRQKNSITLIPSENFTSKAVMDLLGSEMQNKYSEGYPGERYYGGNEIIDKAEALCQKRALEAFGLDPSQWGVNVQPLSGAPANLYAYSAILEVGDRIMGLDLPHGGHLSHGYQTKTTK 172          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYM_NEUCR (Putative serine hydroxymethyltransferase, mitochondrial OS=Neurospora crassa GN=NCU05805 PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 1.235e-44
Identity = 84/129 (65.12%), Postives = 101/129 (78.29%), Query Frame = 3
Query:  123 HDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKIS 509
            +D  +KEK+RQ + I LI SENFTS AV++ALGS + NKYSEG PG RYYGGNEFID  E LC+ RAL+TF LDP +WGVNVQ  SG+PAN   Y+A+++ HDR+MGLDLP GGHL+HGY T   KKIS
Sbjct:   63 NDNQQKEKQRQKQFINLIPSENFTSQAVLDALGSPMQNKYSEGYPGARYYGGNEFIDASERLCQDRALETFGLDPKEWGVNVQALSGAPANLYVYSALMDTHDRLMGLDLPHGGHLSHGYQTP-TKKIS 190          

HSP 2 Score: 26.1794 bits (56), Expect = 1.235e-44
Identity = 12/22 (54.55%), Postives = 16/22 (72.73%), Query Frame = 1
Query:  562 TGYIDYNKLGGKKALEIFRPKV 627
            TGYIDYNKL  ++    +RPK+
Sbjct:  207 TGYIDYNKL--EELAITYRPKI 226          

HSP 3 Score: 23.0978 bits (48), Expect = 1.235e-44
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2
Query:  500 KNIGRTSIYFESLPYKVE 553
            K I   S YFE+LPY+++
Sbjct:  187 KKISFISKYFETLPYRLD 204          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYC_ENCCU (Serine hydroxymethyltransferase, cytosolic OS=Encephalitozoon cuniculi GN=SHMT-1 PE=3 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 1.641e-44
Identity = 91/145 (62.76%), Postives = 103/145 (71.03%), Query Frame = 3
Query:   99 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISGELRFTSR 533
            LE  DPE+H LI  E  RQ + I LIASEN+   + +EA GS LTNKYSEG  G RYYGG  ++D IE LC+ RAL+ F LDP  WGVNVQPYSGSPANFA YTAV+ P  RIMGLDLPSGGHLTHGY T   K  +  + F SR
Sbjct:   14 LEMADPELHALICGEVERQKKTINLIASENYAHQSAMEACGSVLTNKYSEGRVGERYYGGTHWVDRIELLCQKRALELFGLDPDVWGVNVQPYSGSPANFAIYTAVVPPGGRIMGLDLPSGGHLTHGYKTKTRKISASSVYFDSR 158          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYM_ASHGO (Serine hydroxymethyltransferase, mitochondrial OS=Ashbya gossypii GN=SHM1 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 8.146e-44
Identity = 82/137 (59.85%), Postives = 104/137 (75.91%), Query Frame = 3
Query:   99 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKIS 509
            ++  DPE++D++ KE+ RQ R I LI SENFTS AV+  LGS + NKYSEG PG RYYGGN++ID  E+LC+ RAL+ + LDP +WGVNVQ  SG+PAN  AY+A++E  DR+MGLDLP GGHL+HGY    G KIS
Sbjct:   40 VQEFDPEMYDILTKERSRQKRSITLIPSENFTSVAVMNLLGSEMQNKYSEGYPGQRYYGGNQYIDMAESLCQKRALELYGLDPAKWGVNVQSLSGAPANLYAYSAIMEVGDRMMGLDLPHGGHLSHGYQLQNGNKIS 176          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYC_YEAST (Serine hydroxymethyltransferase, cytosolic OS=Saccharomyces cerevisiae GN=SHM2 PE=1 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 1.123e-43
Identity = 81/136 (59.56%), Postives = 100/136 (73.53%), Query Frame = 3
Query:   93 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGK 500
            S L   DPE+  +I+ E  RQ   I+LIASENFTS +V +ALG+ L+NKYSEG PG RYYGGNE ID +E LC+ RAL+ FH+ P +WGVNVQ  SGSPAN   Y A+++PH+R+MGL LP GGHL+HGY T   K
Sbjct:   15 SHLVDTDPEVDSIIKDEIERQKHSIDLIASENFTSTSVFDALGTPLSNKYSEGYPGARYYGGNEHIDRMEILCQQRALKAFHVTPDKWGVNVQTLSGSPANLQVYQAIMKPHERLMGLYLPDGGHLSHGYATENRK 150          

HSP 2 Score: 23.8682 bits (50), Expect = 1.123e-43
Identity = 9/17 (52.94%), Postives = 11/17 (64.71%), Query Frame = 2
Query:  500 KNIGRTSIYFESLPYKV 550
            + I   S YFES PY+V
Sbjct:  149 RKISAVSTYFESFPYRV 165          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYC_CANGA (Serine hydroxymethyltransferase, cytosolic OS=Candida glabrata GN=SHM2 PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.464e-43
Identity = 80/134 (59.70%), Postives = 98/134 (73.13%), Query Frame = 3
Query:   99 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGK 500
            L   DPE+  +I+ E  RQ   I+LIASENFT+ +V +ALG+ L NKYSEG PG RYYGGNE ID IE LC+ RAL+ FH+ P +WGVNVQ  SGSPAN   Y A+++PH+R+MGL LP GGHL+HGY T   K
Sbjct:   17 LSETDPEVEQIIKDEVDRQKHSIDLIASENFTTTSVFDALGTPLCNKYSEGYPGARYYGGNEHIDRIERLCQQRALEAFHVTPDRWGVNVQTLSGSPANLQVYQALMKPHERLMGLYLPDGGHLSHGYATENRK 150          

HSP 2 Score: 23.8682 bits (50), Expect = 1.464e-43
Identity = 9/17 (52.94%), Postives = 11/17 (64.71%), Query Frame = 2
Query:  500 KNIGRTSIYFESLPYKV 550
            + I   S YFES PY+V
Sbjct:  149 RKISAVSTYFESFPYRV 165          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYC_NEUCR (Serine hydroxymethyltransferase, cytosolic OS=Neurospora crassa GN=for PE=3 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 5.280e-43
Identity = 83/131 (63.36%), Postives = 102/131 (77.86%), Query Frame = 3
Query:   96 SLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYT 488
            SL   DP++ ++++KE +RQ   I LIASEN TS AV +ALGS ++NKYSEG+PG RYYGGN+ IDEIE LC++RAL+ FHLDP QWGVNVQ  SGSPAN   Y A++  H R+MGLDLP GGHL+HGY T
Sbjct:   17 SLVESDPQVAEIMKKEVQRQRESIILIASENVTSRAVFDALGSPMSNKYSEGLPGARYYGGNQHIDEIEVLCQNRALEAFHLDPKQWGVNVQCLSGSPANLQVYQAIMPVHGRLMGLDLPHGGHLSHGYQT 147          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYM_YEAST (Serine hydroxymethyltransferase, mitochondrial OS=Saccharomyces cerevisiae GN=SHM1 PE=1 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 1.216e-42
Identity = 79/133 (59.40%), Postives = 101/133 (75.94%), Query Frame = 3
Query:  111 DPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKIS 509
            DPE+ D++++E+ RQ   I LI SENFTS AV++ LGS L NKYSEG PG RYYGGNE ID+ E+LC++RAL+ + LDP +WGVNVQP SG+PAN   Y+A++   +R+MGLDLP GGHL+HGY    G  IS
Sbjct:   37 DPEMFDILQQERHRQKHSITLIPSENFTSKAVMDLLGSELQNKYSEGYPGERYYGGNEIIDKSESLCQARALELYGLDPAKWGVNVQPLSGAPANLYVYSAIMNVGERLMGLDLPDGGHLSHGYQLKSGTPIS 169          

HSP 2 Score: 20.4014 bits (41), Expect = 1.216e-42
Identity = 7/12 (58.33%), Postives = 10/12 (83.33%), Query Frame = 2
Query:  518 SIYFESLPYKVE 553
            S YF+S+PY V+
Sbjct:  172 SKYFQSMPYHVD 183          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYM_CANGA (Serine hydroxymethyltransferase, mitochondrial OS=Candida glabrata GN=SHM1 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.620e-42
Identity = 81/137 (59.12%), Postives = 103/137 (75.18%), Query Frame = 3
Query:   99 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKIS 509
            ++ VDPE+  ++  E+ RQ   + LI SENFTS AV++ LGS + NKYSEG PG RYYGGN+FID+ E+LC++RAL  + LDP +WGVNVQ  SG+PAN  AY+AV+E  DR+MGLDLP GGHL+HGY    G KIS
Sbjct:   27 VQEVDPEMFRILSDERSRQKHSVTLIPSENFTSKAVMDLLGSEMQNKYSEGYPGERYYGGNQFIDKAESLCQARALDLYGLDPEKWGVNVQALSGAPANLYAYSAVMEVGDRLMGLDLPHGGHLSHGYQLPSGTKIS 163          
The following BLAST results are available for this feature:
BLAST of EY675147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYM_KLULA2.541e-4660.58Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_CANAL9.622e-4562.77Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_NEUCR1.235e-4465.12Putative serine hydroxymethyltransferase, mitochon... [more]
GLYC_ENCCU1.641e-4462.76Serine hydroxymethyltransferase, cytosolic OS=Ence... [more]
GLYM_ASHGO8.146e-4459.85Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_YEAST1.123e-4359.56Serine hydroxymethyltransferase, cytosolic OS=Sacc... [more]
GLYC_CANGA1.464e-4359.70Serine hydroxymethyltransferase, cytosolic OS=Cand... [more]
GLYC_NEUCR5.280e-4363.36Serine hydroxymethyltransferase, cytosolic OS=Neur... [more]
GLYM_YEAST1.216e-4259.40Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_CANGA2.620e-4259.12Serine hydroxymethyltransferase, mitochondrial OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-006-F12-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675147 ID=EY675147; Name=EY675147; organism=Citrus sinensis; type=EST; length=1033bp
CCACGCGTCCGCATTTTCCCTTTTTTTCGTTTTCAGTGAATCCAGAAAAC
GGAAAAAAAGAAAAAATGGATCCAGTGAACGAGTGGGGCAACTCATCTCT
TGAAACCGTGGACCCAGAAATTCACGACCTGATCGAGAAAGAGAAGCGCC
GACAATGCCGCGGCATCGAGCTCATCGCCTCCGAGAACTTCACCTCCTTC
GCCGTTATCGAAGCCCTCGGCAGCGCCCTCACCAACAAATACTCAGAGGG
AATGCCCGGCAACCGTTACTACGGAGGCAACGAATTCATCGACGAGATCG
AGAATCTCTGCCGGTCGAGAGCTTTACAAACTTTCCATTTGGACCCCACC
CAGTGGGGTGTCAACGTTCAGCCTTACTCCGGCTCGCCGGCCAACTTCGC
CGCTTACACGGCGGTGCTCGAGCCTCATGACCGTATCATGGGGCTGGACT
TGCCGTCCGGAGGGCATTTGACTCATGGGTATTACACTTCTGGCGGGAAA
AAAATATCGGGCGAACTTCGATTTACTTCGAGAGCTTGCCGTACAAGGTG
GAATTCCAAATACTGGGTATATTGATTACAATAAGTTGGGAGGAAAAAAG
GCGTTGGAAATTTTTAGGCCAAAAGTTGATTATTTTGCGGGGGGGAGGGG
GTTTCCCAAGGGATGGGGAATATGGCTAATTTCAAAGCCGTTGGCTAATA
AAAGGGGGGGGCCCCTTTTGCCCGAGGGAAAAGGGGGCAAAAAGACAAGG
GGCTTGGGTGGGGGCCCAAGGAAGACAGGAAAACCCCTTTTGAATAAAAG
GTACATTAAGATCACAACCCCCGATACTCTCAAAAAAACATGGGGGGGGG
GCCCATCAGGGGCGAGGGGAGGAGTATTTTTTCACCCAGGAAAGGGGGGC
CAAAAAACACAAAGGACCAAAAGAGGGGGAGAGAAACACAAAAAGAGGGG
GGGGGGGAGAATCATAAAAAGGTGTCTGTAAAACATAAAACAGACTAAGT
ACTAGCATGAGCGTTTGAATGATGAGAATACTA
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