EY675147

Overview
NameEY675147
Unique NameEY675147
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1033
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYC_CANAL (Serine hydroxymethyltransferase, cytosolic OS=Candida albicans GN=SHM2 PE=1 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 2.692e-42
Identity = 79/134 (58.96%), Postives = 97/134 (72.39%), Query Frame = 3
Query:   99 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGK 500
            L+  DPE+  +I+ E  RQ   I LIASENFT+ AV +ALG+ + NKYSEG PG RYYGGNE I  +E LC+ RAL+ F L P +WGVNVQ  SGSPAN   Y A+++PH+R+MGLDLP GGHL+HGY T   K
Sbjct:   18 LKDTDPEVDQIIKDEIDRQQHSIVLIASENFTTTAVFDALGTPMCNKYSEGYPGARYYGGNEHIHRMELLCQERALKAFGLTPDKWGVNVQTLSGSPANLQVYQAIMKPHERLMGLDLPHGGHLSHGYQTDSRK 151          

HSP 2 Score: 25.0238 bits (53), Expect = 2.692e-42
Identity = 8/20 (40.00%), Postives = 14/20 (70.00%), Query Frame = 2
Query:  500 KNIGRTSIYFESLPYKVEFQ 559
            + I   S YFE++PY+V+ +
Sbjct:  150 RKISAVSTYFETMPYRVDLE 169          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYC_ASHGO (Serine hydroxymethyltransferase, cytosolic OS=Ashbya gossypii GN=SHM2 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 7.762e-42
Identity = 79/137 (57.66%), Postives = 98/137 (71.53%), Query Frame = 3
Query:   90 NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGK 500
            +S L   DPE+  +I+ E  RQ   I LIASEN TS AV +ALG+ + NKYSEG PG RYYGGN+ ID +E LC+ RAL+ FH+ P +WGVNVQ  SGSPAN   Y A+++PH+R+MGL LP GGHL+HGY T   K
Sbjct:   14 SSHLSESDPEVDAIIKDEIDRQKHSIVLIASENLTSTAVFDALGTPMCNKYSEGYPGARYYGGNQHIDRMELLCQRRALEAFHVTPDRWGVNVQSLSGSPANLQVYQALMKPHERLMGLHLPDGGHLSHGYQTETRK 150          

HSP 2 Score: 24.6386 bits (52), Expect = 7.762e-42
Identity = 9/18 (50.00%), Postives = 12/18 (66.67%), Query Frame = 2
Query:  500 KNIGRTSIYFESLPYKVE 553
            + I   S YFES PY+V+
Sbjct:  149 RKISAVSTYFESFPYRVD 166          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_CHLAD (Serine hydroxymethyltransferase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=glyA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.951e-36
Identity = 75/127 (59.06%), Postives = 91/127 (71.65%), Query Frame = 3
Query:   99 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            L   DP I DLIE+E +RQ +G+ELIASEN+TS AV+EA GS LTNKY+EG+PG RYYGG EF+D IE L   RA Q F         NVQP+SG+ AN A +TA+L+P D I+G+ L  GGHLTHG
Sbjct:    5 LRATDPIIADLIEREAQRQRQGLELIASENYTSLAVMEAQGSVLTNKYAEGLPGRRYYGGCEFVDAIEQLAIDRACQLFGTS----HANVQPHSGAQANIAVFTALLQPGDTILGMRLDHGGHLTHG 127          

HSP 2 Score: 24.6386 bits (52), Expect = 1.951e-36
Identity = 18/56 (32.14%), Postives = 25/56 (44.64%), Query Frame = 1
Query:  493 AGKKYRANFDLLRELAVQGGIPNTGYIDYNKLGGKKALEIFRPKVDYFAGGRGFPK 660
            +GK Y  +F         G  P TG IDY+ L  K      RPK+   +G   +P+
Sbjct:  133 SGKWYNVHF--------YGVDPQTGQIDYDDLAAK--ARAIRPKL-ITSGASAYPR 177          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_SALRD (Serine hydroxymethyltransferase OS=Salinibacter ruber (strain DSM 13855) GN=glyA PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 4.787e-36
Identity = 76/129 (58.91%), Postives = 95/129 (73.64%), Query Frame = 3
Query:   93 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            S+L   DPEIHD+I+KE +RQ  G+ELIASENF S AV+EA+G+ALTNKY+EG+PG RYYGG E +D  E L R RA + +  D   W VNVQP++G+ AN A Y  +L+P D  +GLDL  GGHLTHG
Sbjct:    2 SALRNQDPEIHDVIQKEVQRQNDGLELIASENFASRAVMEAMGTALTNKYAEGLPGKRYYGGCEVVDRAEELARERAKELYDCD---W-VNVQPHAGAQANSAVYLTLLDPGDTFLGLDLSHGGHLTHG 126          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_CARHZ (Serine hydroxymethyltransferase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=glyA PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.066e-35
Identity = 77/130 (59.23%), Postives = 95/130 (73.08%), Query Frame = 3
Query:   90 NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            N  L+ VDPEI + +EKE  RQ   IELIASENF S AV+EA+GS LTNKY+EG+PG RYYGG E++D +ENL R RA + F  +     VNVQP+SG+ AN AAY A LEP D ++G++L  GGHLTHG
Sbjct:    5 NLRLKDVDPEIFEAMEKELSRQREKIELIASENFVSRAVMEAMGSHLTNKYAEGLPGKRYYGGCEYVDVVENLARERAKKLFGAE----HVNVQPHSGAQANMAAYMAFLEPGDTVLGMNLAHGGHLTHG 130          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_PROM4 (Serine hydroxymethyltransferase OS=Prochlorococcus marinus (strain MIT 9211) GN=glyA PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 6.912e-35
Identity = 76/130 (58.46%), Postives = 95/130 (73.08%), Query Frame = 3
Query:   90 NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            NS+LE  DP I  LI++E +RQ   +ELIASENFTS AV+EA GS LTNKY+EG+P  RYYGG E ID+IE L   RA Q F     +W  NVQP+SG+ ANF+ + ++LEP ++IMG+DL  GGHLTHG
Sbjct:    5 NSALEDADPNIASLIQEESKRQENHLELIASENFTSKAVMEAQGSVLTNKYAEGLPNKRYYGGCEHIDKIEGLAIERAKQLF---KAEW-ANVQPHSGAQANFSVFLSLLEPGEKIMGMDLSHGGHLTHG 130          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_CHLTE (Serine hydroxymethyltransferase OS=Chlorobium tepidum GN=glyA PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 9.027e-35
Identity = 77/130 (59.23%), Postives = 91/130 (70.00%), Query Frame = 3
Query:   90 NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            N  L+ +DPE+ + I  E +RQ   +ELIASENFTS AV+EA GS +TNKY+EG PG RYYGG EF+D  ENL R RA + F  +     VNVQP+SGS AN A   AVL+P D IMGLDL  GGHLTHG
Sbjct:    3 NDILKRLDPEVFEAIANETKRQTETLELIASENFTSKAVMEACGSVMTNKYAEGYPGKRYYGGCEFVDVAENLARDRAKKLFGCE----YVNVQPHSGSSANMAVLFAVLKPGDAIMGLDLSHGGHLTHG 128          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_CHLP8 (Serine hydroxymethyltransferase OS=Chlorobaculum parvum (strain NCIB 8327) GN=glyA PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 9.027e-35
Identity = 77/127 (60.63%), Postives = 90/127 (70.87%), Query Frame = 3
Query:   99 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            L+ +DPE+ + I  E RRQ   +ELIASENFTS AV+EA GS +TNKY+EG PG RYYGG EF+D  ENL R RA + F  +     VNVQP+SGS AN A   AVL+P D IMGLDL  GGHLTHG
Sbjct:    6 LKRLDPEVFEAIANETRRQTETLELIASENFTSTAVMEACGSVMTNKYAEGYPGKRYYGGCEFVDVAENLARDRAKKLFGCE----YVNVQPHSGSSANMAVLFAVLKPGDSIMGLDLSHGGHLTHG 128          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_CHLSY (Serine hydroxymethyltransferase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=glyA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.179e-34
Identity = 75/127 (59.06%), Postives = 91/127 (71.65%), Query Frame = 3
Query:   99 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            L   DP I DLIE+E +RQ +G+ELIASEN+TS AV+EA GS LTNKY+EG+PG RYYGG EF+D IE L   RA Q F         NVQP+SG+ AN A +TA+L+P D I+G+ L  GGHLTHG
Sbjct:    5 LRATDPIIADLIEREAQRQRQGLELIASENYTSLAVMEAQGSVLTNKYAEGLPGRRYYGGCEFVDAIEQLAIERACQLFGTS----HANVQPHSGAQANIAVFTALLQPGDTILGMRLDHGGHLTHG 127          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_CHLAA (Serine hydroxymethyltransferase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=glyA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.179e-34
Identity = 75/127 (59.06%), Postives = 91/127 (71.65%), Query Frame = 3
Query:   99 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            L   DP I DLIE+E +RQ +G+ELIASEN+TS AV+EA GS LTNKY+EG+PG RYYGG EF+D IE L   RA Q F         NVQP+SG+ AN A +TA+L+P D I+G+ L  GGHLTHG
Sbjct:    5 LRATDPIIADLIEREAQRQRQGLELIASENYTSLAVMEAQGSVLTNKYAEGLPGRRYYGGCEFVDAIEQLAIERACQLFGTS----HANVQPHSGAQANIAVFTALLQPGDTILGMRLDHGGHLTHG 127          
The following BLAST results are available for this feature:
BLAST of EY675147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC_CANAL2.692e-4258.96Serine hydroxymethyltransferase, cytosolic OS=Cand... [more]
GLYC_ASHGO7.762e-4257.66Serine hydroxymethyltransferase, cytosolic OS=Ashb... [more]
GLYA_CHLAD1.951e-3659.06Serine hydroxymethyltransferase OS=Chloroflexus ag... [more]
GLYA_SALRD4.787e-3658.91Serine hydroxymethyltransferase OS=Salinibacter ru... [more]
GLYA_CARHZ1.066e-3559.23Serine hydroxymethyltransferase OS=Carboxydothermu... [more]
GLYA_PROM46.912e-3558.46Serine hydroxymethyltransferase OS=Prochlorococcus... [more]
GLYA_CHLTE9.027e-3559.23Serine hydroxymethyltransferase OS=Chlorobium tepi... [more]
GLYA_CHLP89.027e-3560.63Serine hydroxymethyltransferase OS=Chlorobaculum p... [more]
GLYA_CHLSY1.179e-3459.06Serine hydroxymethyltransferase OS=Chloroflexus au... [more]
GLYA_CHLAA1.179e-3459.06Serine hydroxymethyltransferase OS=Chloroflexus au... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-006-F12-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675147 ID=EY675147; Name=EY675147; organism=Citrus sinensis; type=EST; length=1033bp
CCACGCGTCCGCATTTTCCCTTTTTTTCGTTTTCAGTGAATCCAGAAAAC
GGAAAAAAAGAAAAAATGGATCCAGTGAACGAGTGGGGCAACTCATCTCT
TGAAACCGTGGACCCAGAAATTCACGACCTGATCGAGAAAGAGAAGCGCC
GACAATGCCGCGGCATCGAGCTCATCGCCTCCGAGAACTTCACCTCCTTC
GCCGTTATCGAAGCCCTCGGCAGCGCCCTCACCAACAAATACTCAGAGGG
AATGCCCGGCAACCGTTACTACGGAGGCAACGAATTCATCGACGAGATCG
AGAATCTCTGCCGGTCGAGAGCTTTACAAACTTTCCATTTGGACCCCACC
CAGTGGGGTGTCAACGTTCAGCCTTACTCCGGCTCGCCGGCCAACTTCGC
CGCTTACACGGCGGTGCTCGAGCCTCATGACCGTATCATGGGGCTGGACT
TGCCGTCCGGAGGGCATTTGACTCATGGGTATTACACTTCTGGCGGGAAA
AAAATATCGGGCGAACTTCGATTTACTTCGAGAGCTTGCCGTACAAGGTG
GAATTCCAAATACTGGGTATATTGATTACAATAAGTTGGGAGGAAAAAAG
GCGTTGGAAATTTTTAGGCCAAAAGTTGATTATTTTGCGGGGGGGAGGGG
GTTTCCCAAGGGATGGGGAATATGGCTAATTTCAAAGCCGTTGGCTAATA
AAAGGGGGGGGCCCCTTTTGCCCGAGGGAAAAGGGGGCAAAAAGACAAGG
GGCTTGGGTGGGGGCCCAAGGAAGACAGGAAAACCCCTTTTGAATAAAAG
GTACATTAAGATCACAACCCCCGATACTCTCAAAAAAACATGGGGGGGGG
GCCCATCAGGGGCGAGGGGAGGAGTATTTTTTCACCCAGGAAAGGGGGGC
CAAAAAACACAAAGGACCAAAAGAGGGGGAGAGAAACACAAAAAGAGGGG
GGGGGGGAGAATCATAAAAAGGTGTCTGTAAAACATAAAACAGACTAAGT
ACTAGCATGAGCGTTTGAATGATGAGAATACTA
back to top