EY675147

Overview
NameEY675147
Unique NameEY675147
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1033
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_THEAB (Serine hydroxymethyltransferase OS=Thermosipho africanus (strain TCF52B) GN=glyA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.540e-34
Identity = 78/132 (59.09%), Postives = 92/132 (69.70%), Query Frame = 3
Query:   84 WGNSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            W N  ++  DPEI+D+I KE  RQ  G+ELIASENF S AVIEA+GS LTNKY+EG PG RYYGG E++D  E L R RA + F++       NVQP+SGS AN  AY AV EP D IMG+ L  GGHLTHG
Sbjct:    2 WEN--VKKTDPEIYDVILKEWERQEYGLELIASENFASLAVIEAMGSVLTNKYAEGYPGRRYYGGCEWVDVAEKLARDRAKELFNVK----YANVQPHSGSQANMGAYFAVSEPGDTIMGMSLSHGGHLTHG 127          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_THEM4 (Serine hydroxymethyltransferase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=glyA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.627e-34
Identity = 78/132 (59.09%), Postives = 93/132 (70.45%), Query Frame = 3
Query:   84 WGNSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            W N  ++ VDPEI+++I KE  RQ  G+ELIASENF S AVIEA+GS LTNKY+EG PG RYYGG E++D  E L R RA + F++       NVQP+SGS AN  AY AV EP D IMG+ L  GGHLTHG
Sbjct:    2 WEN--VKKVDPEIYEVILKEWDRQEYGLELIASENFASLAVIEAMGSVLTNKYAEGYPGRRYYGGCEWVDVAEKLARDRAKELFNVK----YANVQPHSGSQANMGAYFAVSEPGDTIMGMSLSHGGHLTHG 127          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBM (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=glyA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.627e-34
Identity = 73/129 (56.59%), Postives = 94/129 (72.87%), Query Frame = 3
Query:   93 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            ++L+  DPE+ D+I+KE+ RQ   IELIASENFTS +V+EA+GS LTNKY+EG P  RYYGG EF+DE+E+L R R  + F  +      NVQP+SGS AN A Y +VL+  D I+G+DL  GGHLTHG
Sbjct:    4 TNLKNTDPELLDMIKKEEERQEYNIELIASENFTSLSVMEAMGSLLTNKYAEGYPHKRYYGGCEFVDEVEDLARERLKKLFAAE----HANVQPHSGSQANMAVYMSVLQTGDTILGMDLSHGGHLTHG 128          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBL (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=glyA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.627e-34
Identity = 73/129 (56.59%), Postives = 94/129 (72.87%), Query Frame = 3
Query:   93 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            ++L+  DPE+ D+I+KE+ RQ   IELIASENFTS +V+EA+GS LTNKY+EG P  RYYGG EF+DE+E+L R R  + F  +      NVQP+SGS AN A Y +VL+  D I+G+DL  GGHLTHG
Sbjct:    4 TNLKNTDPELLDMIKKEEERQEYNIELIASENFTSLSVMEAMGSLLTNKYAEGYPHKRYYGGCEFVDEVEDLARERLKKLFAAE----HANVQPHSGSQANMAVYMSVLQTGDTILGMDLSHGGHLTHG 128          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBJ (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Kyoto / Type A2) GN=glyA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.627e-34
Identity = 73/129 (56.59%), Postives = 94/129 (72.87%), Query Frame = 3
Query:   93 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            ++L+  DPE+ D+I+KE+ RQ   IELIASENFTS +V+EA+GS LTNKY+EG P  RYYGG EF+DE+E+L R R  + F  +      NVQP+SGS AN A Y +VL+  D I+G+DL  GGHLTHG
Sbjct:    4 TNLKNTDPELLDMIKKEEERQEYNIELIASENFTSLSVMEAMGSLLTNKYAEGYPHKRYYGGCEFVDEVEDLARERLKKLFAAE----HANVQPHSGSQANMAVYMSVLQTGDTILGMDLSHGGHLTHG 128          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_CLOB6 (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain 657 / Type Ba4) GN=glyA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.627e-34
Identity = 73/129 (56.59%), Postives = 94/129 (72.87%), Query Frame = 3
Query:   93 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            ++L+  DPE+ D+I+KE+ RQ   IELIASENFTS +V+EA+GS LTNKY+EG P  RYYGG EF+DE+E+L R R  + F  +      NVQP+SGS AN A Y +VL+  D I+G+DL  GGHLTHG
Sbjct:    4 TNLKNTDPELLDMIKKEEERQEYNIELIASENFTSLSVMEAMGSLLTNKYAEGYPHKRYYGGCEFVDEVEDLARERLKKLFAAE----HANVQPHSGSQANMAVYMSVLQTGDTILGMDLSHGGHLTHG 128          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBK (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Okra / Type B1) GN=glyA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 3.430e-34
Identity = 73/129 (56.59%), Postives = 94/129 (72.87%), Query Frame = 3
Query:   93 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            ++L+  DPE+ D+I+KE+ RQ   IELIASENFTS +V+EA+GS LTNKY+EG P  RYYGG EF+DE+E+L R R  + F  +      NVQP+SGS AN A Y +VL+  D I+G+DL  GGHLTHG
Sbjct:    4 TNLKNTDPELLDMIKKEEERQEYNIELIASENFTSLSVMEAMGSLLTNKYAEGYPHKRYYGGCEFVDEVEDLARERLKKLFVAE----HANVQPHSGSQANMAVYMSVLQTGDTILGMDLSHGGHLTHG 128          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_AQUAE (Serine hydroxymethyltransferase OS=Aquifex aeolicus GN=glyA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 3.430e-34
Identity = 73/123 (59.35%), Postives = 87/123 (70.73%), Query Frame = 3
Query:  111 DPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            DPE+ D + KE  RQ   +E+IASENFTS AV+EA GS LTNKY+EG+PG RYYGG E++D +ENL   RA + F  +      NVQP+SGS AN A Y AVL P D IMG+DL  GGHLTHG
Sbjct:    8 DPEVFDAVVKEYERQFYNLEMIASENFTSLAVMEATGSVLTNKYAEGLPGKRYYGGCEYVDVVENLAIERAKKLFGAE----HANVQPHSGSQANMAVYFAVLNPGDTIMGMDLAHGGHLTHG 126          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_ACIC1 (Serine hydroxymethyltransferase OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=glyA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 3.430e-34
Identity = 75/133 (56.39%), Postives = 89/133 (66.92%), Query Frame = 3
Query:   93 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTS 491
            ++L   DP I DLI  E+RRQ   I LI SEN+ S AV+EA G+ LTNKYSEG P  RYY G +FID+IE +   RA Q F +D      NVQPYSGSPAN A Y A+L P D +MG+ LP GGHLTHG+  S
Sbjct:    9 AALTATDPTIADLIRAEERRQSEKIRLIPSENYVSKAVLEATGTVLTNKYSEGYPNRRYYEGQQFIDQIETIAIERAKQLFGVD----HANVQPYSGSPANLAIYLALLSPGDTVMGMALPMGGHLTHGWPVS 137          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBH (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=glyA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 5.851e-34
Identity = 72/129 (55.81%), Postives = 94/129 (72.87%), Query Frame = 3
Query:   93 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            ++L+  DPE+ D+I+KE+ RQ   IELIASENFTS +V+E++GS LTNKY+EG P  RYYGG EF+DE+E+L R R  + F  +      NVQP+SGS AN A Y +VL+  D I+G+DL  GGHLTHG
Sbjct:    4 TNLKNTDPELLDMIKKEEERQEYNIELIASENFTSLSVMESMGSLLTNKYAEGYPHKRYYGGCEFVDEVEDLARERLKKLFAAE----HANVQPHSGSQANMAVYMSVLQTGDTILGMDLSHGGHLTHG 128          
The following BLAST results are available for this feature:
BLAST of EY675147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_THEAB1.540e-3459.09Serine hydroxymethyltransferase OS=Thermosipho afr... [more]
GLYA_THEM42.627e-3459.09Serine hydroxymethyltransferase OS=Thermosipho mel... [more]
GLYA_CLOBM2.627e-3456.59Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_CLOBL2.627e-3456.59Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_CLOBJ2.627e-3456.59Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_CLOB62.627e-3456.59Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_CLOBK3.430e-3456.59Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_AQUAE3.430e-3459.35Serine hydroxymethyltransferase OS=Aquifex aeolicu... [more]
GLYA_ACIC13.430e-3456.39Serine hydroxymethyltransferase OS=Acidothermus ce... [more]
GLYA_CLOBH5.851e-3455.81Serine hydroxymethyltransferase OS=Clostridium bot... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-006-F12-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675147 ID=EY675147; Name=EY675147; organism=Citrus sinensis; type=EST; length=1033bp
CCACGCGTCCGCATTTTCCCTTTTTTTCGTTTTCAGTGAATCCAGAAAAC
GGAAAAAAAGAAAAAATGGATCCAGTGAACGAGTGGGGCAACTCATCTCT
TGAAACCGTGGACCCAGAAATTCACGACCTGATCGAGAAAGAGAAGCGCC
GACAATGCCGCGGCATCGAGCTCATCGCCTCCGAGAACTTCACCTCCTTC
GCCGTTATCGAAGCCCTCGGCAGCGCCCTCACCAACAAATACTCAGAGGG
AATGCCCGGCAACCGTTACTACGGAGGCAACGAATTCATCGACGAGATCG
AGAATCTCTGCCGGTCGAGAGCTTTACAAACTTTCCATTTGGACCCCACC
CAGTGGGGTGTCAACGTTCAGCCTTACTCCGGCTCGCCGGCCAACTTCGC
CGCTTACACGGCGGTGCTCGAGCCTCATGACCGTATCATGGGGCTGGACT
TGCCGTCCGGAGGGCATTTGACTCATGGGTATTACACTTCTGGCGGGAAA
AAAATATCGGGCGAACTTCGATTTACTTCGAGAGCTTGCCGTACAAGGTG
GAATTCCAAATACTGGGTATATTGATTACAATAAGTTGGGAGGAAAAAAG
GCGTTGGAAATTTTTAGGCCAAAAGTTGATTATTTTGCGGGGGGGAGGGG
GTTTCCCAAGGGATGGGGAATATGGCTAATTTCAAAGCCGTTGGCTAATA
AAAGGGGGGGGCCCCTTTTGCCCGAGGGAAAAGGGGGCAAAAAGACAAGG
GGCTTGGGTGGGGGCCCAAGGAAGACAGGAAAACCCCTTTTGAATAAAAG
GTACATTAAGATCACAACCCCCGATACTCTCAAAAAAACATGGGGGGGGG
GCCCATCAGGGGCGAGGGGAGGAGTATTTTTTCACCCAGGAAAGGGGGGC
CAAAAAACACAAAGGACCAAAAGAGGGGGAGAGAAACACAAAAAGAGGGG
GGGGGGGAGAATCATAAAAAGGTGTCTGTAAAACATAAAACAGACTAAGT
ACTAGCATGAGCGTTTGAATGATGAGAATACTA
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