EY675147

Overview
NameEY675147
Unique NameEY675147
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1033
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_ACTSZ (Serine hydroxymethyltransferase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=glyA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 5.667e-29
Identity = 69/137 (50.36%), Postives = 89/137 (64.96%), Query Frame = 3
Query:   96 SLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKI 506
            ++  +DP + D ++ E RRQ   IELIASEN+ + AV++A GS LTNKY+EG PG RYYGG E++D +E L   RA + F  +      NVQP+SGS AN A Y A+L   D I+G+DL  GGHLTHG   S   KI
Sbjct:    6 TIAELDPVLWDAMQNEVRRQEEHIELIASENYVTPAVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGAE----YANVQPHSGSQANAAVYGALLSAGDTILGMDLAHGGHLTHGAKVSFSGKI 138          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_HYPME (Serine hydroxymethyltransferase OS=Hyphomicrobium methylovorum GN=glyA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 7.268e-29
Identity = 65/129 (50.39%), Postives = 85/129 (65.89%), Query Frame = 3
Query:   93 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            S +   DP+I   I+KE  RQ   IELIASEN  S AV++A GS LTNKY+EG PG RYYGG +++D +E++   RA + F+ +      NVQP SGS AN   + A+ +P D I+GL L +GGHLTHG
Sbjct:   18 SHVSETDPDIFSAIQKEFGRQQHEIELIASENIVSQAVLDAAGSVLTNKYAEGYPGKRYYGGCQYVDIVEDIAIDRAKKLFNCE----FANVQPNSGSQANQGVFNALAQPGDTILGLSLAAGGHLTHG 142          

HSP 2 Score: 20.7866 bits (42), Expect = 7.268e-29
Identity = 10/36 (27.78%), Postives = 19/36 (52.78%), Query Frame = 2
Query:  581 ISWEEKRRWKFLGQKLIILRGGGGFPRDGEYG*FQS 688
            I  +E R+     +  II+ GG  +PR  ++  F++
Sbjct:  166 IDMDEVRKLAQEHKPRIIIAGGSAYPRKIDFAAFRA 201          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_STRZP (Serine hydroxymethyltransferase OS=Streptococcus pneumoniae (strain P1031) GN=glyA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 7.402e-29
Identity = 66/123 (53.66%), Postives = 83/123 (67.48%), Query Frame = 3
Query:  111 DPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            D ++ + I KE+ RQ   IELIASEN  S AV+ A GS LTNKY+EG PG RYYGG + +D +E L   RA + F         NVQP+SGS AN AAY +++EP D +MG+DL +GGHLTHG
Sbjct:   12 DADLWNAIAKEEERQQNNIELIASENVVSKAVMAAQGSILTNKYAEGYPGRRYYGGTDVVDVVETLAIERAKEIFGAK----FANVQPHSGSQANCAAYMSLIEPGDTVMGMDLAAGGHLTHG 130          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_STRR6 (Serine hydroxymethyltransferase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=glyA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 7.402e-29
Identity = 66/123 (53.66%), Postives = 83/123 (67.48%), Query Frame = 3
Query:  111 DPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            D ++ + I KE+ RQ   IELIASEN  S AV+ A GS LTNKY+EG PG RYYGG + +D +E L   RA + F         NVQP+SGS AN AAY +++EP D +MG+DL +GGHLTHG
Sbjct:   12 DADLWNAIAKEEERQQNNIELIASENVVSKAVMAAQGSILTNKYAEGYPGRRYYGGTDVVDVVETLAIERAKEIFGAK----FANVQPHSGSQANCAAYMSLIEPGDTVMGMDLAAGGHLTHG 130          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_STRP2 (Serine hydroxymethyltransferase OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=glyA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 7.402e-29
Identity = 66/123 (53.66%), Postives = 83/123 (67.48%), Query Frame = 3
Query:  111 DPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            D ++ + I KE+ RQ   IELIASEN  S AV+ A GS LTNKY+EG PG RYYGG + +D +E L   RA + F         NVQP+SGS AN AAY +++EP D +MG+DL +GGHLTHG
Sbjct:   12 DADLWNAIAKEEERQQNNIELIASENVVSKAVMAAQGSILTNKYAEGYPGRRYYGGTDVVDVVETLAIERAKEIFGAK----FANVQPHSGSQANCAAYMSLIEPGDTVMGMDLAAGGHLTHG 130          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_SHEWM (Serine hydroxymethyltransferase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=glyA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 7.402e-29
Identity = 69/138 (50.00%), Postives = 88/138 (63.77%), Query Frame = 3
Query:  111 DPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISGELRF 524
            DP++   I+ E RRQ   IELIASEN+TS  V+EA GS LTNKY+EG PG RYYGG E +D  E L  SRA + F         NVQP+SGS AN A + A+LE  D ++G+ L  GGHLTHG + S   K+   +++
Sbjct:   12 DPQLFQAIQDETRRQEEHIELIASENYTSPRVLEAQGSQLTNKYAEGYPGKRYYGGCEHVDIAEELAISRAKELFGAT----YANVQPHSGSQANAAVFMALLEGGDTVLGMSLAHGGHLTHGSHVSFSGKLYNSVQY 145          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_PHYAS (Serine hydroxymethyltransferase OS=Phytoplasma australiense GN=glyA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 7.402e-29
Identity = 69/133 (51.88%), Postives = 87/133 (65.41%), Query Frame = 3
Query:   93 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTS 491
            S L   DP+I +LIE+EK+RQ   I LIASENF S  V+E  GS LTNKY+EG PG RYY G   +D+IE +   RA + F+        NVQP+SGS AN A   A+L+P+D+I+ L L  GGHLTHG+  S
Sbjct:    3 SQLSLKDPKIFELIEQEKKRQKENIILIASENFVSKEVLETQGSILTNKYAEGYPGKRYYHGCGNVDDIEQIAIERAKKLFNAR----YANVQPHSGSQANMAVLQALLQPNDKILSLSLNDGGHLTHGHKLS 131          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_MYCMO (Serine hydroxymethyltransferase OS=Mycoplasma mobile GN=glyA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 7.402e-29
Identity = 68/127 (53.54%), Postives = 86/127 (67.72%), Query Frame = 3
Query:  111 DPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTS 491
            D EI  +I  E++RQ   IELIASEN+ S  V+EA GS LTNKYSEG PG RYY G EF+D+IE L   R  + F++       NVQP+SGS AN AA  A+++P  +I+G+ L +GGHLTHGY  S
Sbjct:    8 DKEIEKIINNEQQRQEEHIELIASENYVSKDVLEATGSILTNKYSEGYPGARYYDGCEFVDQIETLAIERLKKLFNVK----FANVQPHSGSSANSAAIAALVKPGGKILGMSLDAGGHLTHGYKIS 130          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_BACWK (Serine hydroxymethyltransferase OS=Bacillus weihenstephanensis (strain KBAB4) GN=glyA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 7.402e-29
Identity = 67/127 (52.76%), Postives = 85/127 (66.93%), Query Frame = 3
Query:   99 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            L+  D ++   IE E  RQ   IELIASENF S AV+EA GS LTNKY+EG PG RYYGG E +D +E++ R RA + F  +     VNVQP+SG+ AN A Y  +LE  D ++G++L  GGHLTHG
Sbjct:    4 LKRQDEKVFAAIEAELGRQRSKIELIASENFVSEAVMEAQGSVLTNKYAEGYPGKRYYGGCEHVDVVEDIARDRAKEIFGAE----HVNVQPHSGAQANMAVYFTILEQGDTVLGMNLSHGGHLTHG 126          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_AZOSB (Serine hydroxymethyltransferase OS=Azoarcus sp. (strain BH72) GN=glyA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 7.402e-29
Identity = 70/128 (54.69%), Postives = 81/128 (63.28%), Query Frame = 3
Query:   96 SLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            +L  VDPE+   I+ E RRQ   IELIASEN+ S AV+EA GS LTNKY+EG PG RYYGG E +D +E L   R  + F  D      NVQP SGS AN A   A  +P D IMG+ L  GGHLTHG
Sbjct:    7 TLAKVDPELWSAIQAENRRQEDHIELIASENYVSHAVMEAQGSQLTNKYAEGYPGKRYYGGCEHVDVVEQLAIDRLKKLFGAD----AANVQPNSGSQANQAVLMAFAKPGDTIMGMSLAEGGHLTHG 130          
The following BLAST results are available for this feature:
BLAST of EY675147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_ACTSZ5.667e-2950.36Serine hydroxymethyltransferase OS=Actinobacillus ... [more]
GLYA_HYPME7.268e-2950.39Serine hydroxymethyltransferase OS=Hyphomicrobium ... [more]
GLYA_STRZP7.402e-2953.66Serine hydroxymethyltransferase OS=Streptococcus p... [more]
GLYA_STRR67.402e-2953.66Serine hydroxymethyltransferase OS=Streptococcus p... [more]
GLYA_STRP27.402e-2953.66Serine hydroxymethyltransferase OS=Streptococcus p... [more]
GLYA_SHEWM7.402e-2950.00Serine hydroxymethyltransferase OS=Shewanella wood... [more]
GLYA_PHYAS7.402e-2951.88Serine hydroxymethyltransferase OS=Phytoplasma aus... [more]
GLYA_MYCMO7.402e-2953.54Serine hydroxymethyltransferase OS=Mycoplasma mobi... [more]
GLYA_BACWK7.402e-2952.76Serine hydroxymethyltransferase OS=Bacillus weihen... [more]
GLYA_AZOSB7.402e-2954.69Serine hydroxymethyltransferase OS=Azoarcus sp. (s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-006-F12-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675147 ID=EY675147; Name=EY675147; organism=Citrus sinensis; type=EST; length=1033bp
CCACGCGTCCGCATTTTCCCTTTTTTTCGTTTTCAGTGAATCCAGAAAAC
GGAAAAAAAGAAAAAATGGATCCAGTGAACGAGTGGGGCAACTCATCTCT
TGAAACCGTGGACCCAGAAATTCACGACCTGATCGAGAAAGAGAAGCGCC
GACAATGCCGCGGCATCGAGCTCATCGCCTCCGAGAACTTCACCTCCTTC
GCCGTTATCGAAGCCCTCGGCAGCGCCCTCACCAACAAATACTCAGAGGG
AATGCCCGGCAACCGTTACTACGGAGGCAACGAATTCATCGACGAGATCG
AGAATCTCTGCCGGTCGAGAGCTTTACAAACTTTCCATTTGGACCCCACC
CAGTGGGGTGTCAACGTTCAGCCTTACTCCGGCTCGCCGGCCAACTTCGC
CGCTTACACGGCGGTGCTCGAGCCTCATGACCGTATCATGGGGCTGGACT
TGCCGTCCGGAGGGCATTTGACTCATGGGTATTACACTTCTGGCGGGAAA
AAAATATCGGGCGAACTTCGATTTACTTCGAGAGCTTGCCGTACAAGGTG
GAATTCCAAATACTGGGTATATTGATTACAATAAGTTGGGAGGAAAAAAG
GCGTTGGAAATTTTTAGGCCAAAAGTTGATTATTTTGCGGGGGGGAGGGG
GTTTCCCAAGGGATGGGGAATATGGCTAATTTCAAAGCCGTTGGCTAATA
AAAGGGGGGGGCCCCTTTTGCCCGAGGGAAAAGGGGGCAAAAAGACAAGG
GGCTTGGGTGGGGGCCCAAGGAAGACAGGAAAACCCCTTTTGAATAAAAG
GTACATTAAGATCACAACCCCCGATACTCTCAAAAAAACATGGGGGGGGG
GCCCATCAGGGGCGAGGGGAGGAGTATTTTTTCACCCAGGAAAGGGGGGC
CAAAAAACACAAAGGACCAAAAGAGGGGGAGAGAAACACAAAAAGAGGGG
GGGGGGGAGAATCATAAAAAGGTGTCTGTAAAACATAAAACAGACTAAGT
ACTAGCATGAGCGTTTGAATGATGAGAATACTA
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