EY675147

Overview
NameEY675147
Unique NameEY675147
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1033
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_SORC5 (Serine hydroxymethyltransferase OS=Sorangium cellulosum (strain So ce56) GN=glyA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.304e-33
Identity = 75/135 (55.56%), Postives = 91/135 (67.41%), Query Frame = 3
Query:   87 GNSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTS 491
            G  +L  VDPEI +LI  E+RR+   + LIASEN+ S AV+EA GS LTNKYSEG P  RYY G + +D +E L R+R  + F  D     VNVQPYSGSPAN A Y A  + +D IMGL LP+GGHLTHG+  S
Sbjct:    9 GLRALNEVDPEIAELIRLEERREADTLRLIASENYVSRAVLEATGSVLTNKYSEGYPHKRYYEGQQQVDVVEELARTRVAKLFGAD----HVNVQPYSGSPANLAVYLAFAQANDTIMGLGLPAGGHLTHGWSVS 139          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_PELPB (Serine hydroxymethyltransferase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.702e-33
Identity = 76/127 (59.84%), Postives = 89/127 (70.08%), Query Frame = 3
Query:   99 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            L+  D E+ + I KE  RQ   +ELIASENFTS AV++A GS +TNKY+EG PG RYYGG EF+D  ENL R RA + F  D     VNVQP+SGS AN A   +VL+P DRIMGLDL  GGHLTHG
Sbjct:    6 LQKQDSELFEAIAKETGRQTETLELIASENFTSRAVMQACGSVMTNKYAEGYPGKRYYGGCEFVDIAENLARDRAKKLFGCD----YVNVQPHSGSSANMAVLFSVLKPGDRIMGLDLSHGGHLTHG 128          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA2_RHILO (Serine hydroxymethyltransferase 2 OS=Rhizobium loti GN=glyA2 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.702e-33
Identity = 71/133 (53.38%), Postives = 91/133 (68.42%), Query Frame = 3
Query:   84 WGNSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGY 482
            +G SSL  VD  +H+L+ +++R++   ++LIASENF S AV+EA GS   NKY+EG PG RYY GNE +DE+E L   R    F  +      NVQPYSGSPAN A Y A+L P D++MGL LP GGHLTHG+
Sbjct:    7 YGRSSLVQVDCRVHELLLRQRRQERTMLKLIASENFASSAVLEATGSIFANKYAEGYPGARYYAGNEIVDELETLAIERLKALFGSE----HANVQPYSGSPANQAVYRALLSPRDKVMGLPLPEGGHLTHGW 135          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_ACIC5 (Serine hydroxymethyltransferase OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=glyA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 2.223e-33
Identity = 73/129 (56.59%), Postives = 89/129 (68.99%), Query Frame = 3
Query:   96 SLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGY 482
            SL   DP++   I+ E  RQ  G+E+IASENF S AV+EA GS  TNKY+EG PG RYYGG EF D +ENL R RA Q F  +      NVQP+SGS AN AAY ++++P D I+GLDL  GGHLTHG+
Sbjct:    8 SLAQSDPDVAAAIDHEVLRQHEGLEMIASENFVSRAVLEAAGSVFTNKYAEGYPGRRYYGGCEFADVVENLARDRAKQLFGAE----HANVQPHSGSQANAAAYMSIIQPGDTILGLDLAHGGHLTHGH 132          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_SYNS9 (Serine hydroxymethyltransferase OS=Synechococcus sp. (strain CC9902) GN=glyA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.904e-33
Identity = 75/130 (57.69%), Postives = 91/130 (70.00%), Query Frame = 3
Query:   90 NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            N+ L + DPEI  LI++E+ RQ   +ELIASENF S AV++A GS LTNKY+EG+P  RYYGG E +D IE L   RA Q F      W  NVQP+SG+ ANFA + A+L+P D IMGLDL  GGHLTHG
Sbjct:   10 NAGLASADPEISRLIDQERHRQETHLELIASENFASQAVMQAQGSVLTNKYAEGLPAKRYYGGCEHVDAIETLAIERAKQLF---DAAW-ANVQPHSGAQANFAVFLALLKPGDTIMGLDLSHGGHLTHG 135          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_SYNFM (Serine hydroxymethyltransferase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=glyA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.904e-33
Identity = 76/138 (55.07%), Postives = 95/138 (68.84%), Query Frame = 3
Query:   93 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKI 506
            S+LE +DPEI D+I +E++RQ   +ELIASENF S AV EA GS LTNKY+EG PG RYYGG EF+D  E L + RA + F  +      NVQP+SGS AN A + AVL+P D ++G+DL  GGHLTHG   S   K+
Sbjct:    2 STLERIDPEIADVICEEEKRQRGKLELIASENFVSEAVREAQGSVLTNKYAEGYPGKRYYGGCEFVDMAERLAQERAKKLFDAE----YANVQPHSGSQANMAIFFAVLQPGDTVLGMDLRQGGHLTHGSPVSFSGKL 135          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_DESPS (Serine hydroxymethyltransferase OS=Desulfotalea psychrophila GN=glyA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.904e-33
Identity = 74/129 (57.36%), Postives = 90/129 (69.77%), Query Frame = 3
Query:   93 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            ++L+  DPEI  LI++E+ RQ   I LIASEN+ S AV+EA GS LTNKYSEG PG RYY G + ID+IE++   RA   F  +     VNVQPYSGSPAN A Y A L+P D I+G+ LP GGHLTHG
Sbjct:   11 TALQQQDPEIFSLIQQEEVRQHNKIRLIASENYVSSAVLEATGSILTNKYSEGYPGKRYYEGQQLIDQIESIAIDRAKAVFGAE----HVNVQPYSGSPANMAVYLAFLKPGDTILGMALPHGGHLTHG 135          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_SYNS3 (Serine hydroxymethyltransferase OS=Synechococcus sp. (strain CC9311) GN=glyA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.793e-33
Identity = 75/130 (57.69%), Postives = 93/130 (71.54%), Query Frame = 3
Query:   90 NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            N+SL+  DP I  LI++E+ RQ   +ELIASENFTS AV+EA GS LTNKY+EG+P  RYYGG E +D IE L  +RA Q F      W  NVQP+SG+ ANFA + A+L+P D I+G+DL  GGHLTHG
Sbjct:   10 NASLKAADPAIAGLIDQEQMRQETHLELIASENFTSKAVMEAQGSVLTNKYAEGLPHKRYYGGCEHVDAIEELAITRAKQLF---GAAW-ANVQPHSGAQANFAVFLALLQPGDTILGMDLSHGGHLTHG 135          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_NITSB (Serine hydroxymethyltransferase OS=Nitratiruptor sp. (strain SB155-2) GN=glyA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.793e-33
Identity = 72/136 (52.94%), Postives = 94/136 (69.12%), Query Frame = 3
Query:   99 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKI 506
            L+  DP ++++ EKE +RQ   +E+IASENFTS AV+EA+GS  TNKY+EG PG RYYGG E+ D IE L   RA + F  +     VNVQP+SGS AN   Y A+L+P+D+I+G+DL  GGHLTHG   +   KI
Sbjct:    4 LKNQDPAVYEIFEKELQRQTDHLEMIASENFTSPAVMEAMGSVFTNKYAEGYPGKRYYGGCEYADAIEELAIQRAKELFGCE----FVNVQPHSGSQANQGVYLALLKPYDKILGMDLSHGGHLTHGAKVNASGKI 135          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_CLOB8 (Serine hydroxymethyltransferase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=glyA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.793e-33
Identity = 74/128 (57.81%), Postives = 90/128 (70.31%), Query Frame = 3
Query:   96 SLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            +++  D EI+DLIEKE  RQ +GIELIASEN  S AV+EA+GS LTNKY+EG P  RYYGG   +DEIE +   RA + F  +      NVQP+SGS AN A Y AVLEP D ++G+DL  GGHLTHG
Sbjct:    5 NIQREDKEIYDLIEKELVRQQKGIELIASENIVSPAVMEAMGSYLTNKYAEGYPNKRYYGGCHVVDEIEQIAIDRAKELFGAE----HANVQPHSGSQANMAVYFAVLEPGDTVLGMDLSHGGHLTHG 128          
The following BLAST results are available for this feature:
BLAST of EY675147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_SORC51.304e-3355.56Serine hydroxymethyltransferase OS=Sorangium cellu... [more]
GLYA_PELPB1.702e-3359.84Serine hydroxymethyltransferase OS=Pelodictyon pha... [more]
GLYA2_RHILO1.702e-3353.38Serine hydroxymethyltransferase 2 OS=Rhizobium lot... [more]
GLYA_ACIC52.223e-3356.59Serine hydroxymethyltransferase OS=Acidobacterium ... [more]
GLYA_SYNS92.904e-3357.69Serine hydroxymethyltransferase OS=Synechococcus s... [more]
GLYA_SYNFM2.904e-3355.07Serine hydroxymethyltransferase OS=Syntrophobacter... [more]
GLYA_DESPS2.904e-3357.36Serine hydroxymethyltransferase OS=Desulfotalea ps... [more]
GLYA_SYNS33.793e-3357.69Serine hydroxymethyltransferase OS=Synechococcus s... [more]
GLYA_NITSB3.793e-3352.94Serine hydroxymethyltransferase OS=Nitratiruptor s... [more]
GLYA_CLOB83.793e-3357.81Serine hydroxymethyltransferase OS=Clostridium bei... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-006-F12-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675147 ID=EY675147; Name=EY675147; organism=Citrus sinensis; type=EST; length=1033bp
CCACGCGTCCGCATTTTCCCTTTTTTTCGTTTTCAGTGAATCCAGAAAAC
GGAAAAAAAGAAAAAATGGATCCAGTGAACGAGTGGGGCAACTCATCTCT
TGAAACCGTGGACCCAGAAATTCACGACCTGATCGAGAAAGAGAAGCGCC
GACAATGCCGCGGCATCGAGCTCATCGCCTCCGAGAACTTCACCTCCTTC
GCCGTTATCGAAGCCCTCGGCAGCGCCCTCACCAACAAATACTCAGAGGG
AATGCCCGGCAACCGTTACTACGGAGGCAACGAATTCATCGACGAGATCG
AGAATCTCTGCCGGTCGAGAGCTTTACAAACTTTCCATTTGGACCCCACC
CAGTGGGGTGTCAACGTTCAGCCTTACTCCGGCTCGCCGGCCAACTTCGC
CGCTTACACGGCGGTGCTCGAGCCTCATGACCGTATCATGGGGCTGGACT
TGCCGTCCGGAGGGCATTTGACTCATGGGTATTACACTTCTGGCGGGAAA
AAAATATCGGGCGAACTTCGATTTACTTCGAGAGCTTGCCGTACAAGGTG
GAATTCCAAATACTGGGTATATTGATTACAATAAGTTGGGAGGAAAAAAG
GCGTTGGAAATTTTTAGGCCAAAAGTTGATTATTTTGCGGGGGGGAGGGG
GTTTCCCAAGGGATGGGGAATATGGCTAATTTCAAAGCCGTTGGCTAATA
AAAGGGGGGGGCCCCTTTTGCCCGAGGGAAAAGGGGGCAAAAAGACAAGG
GGCTTGGGTGGGGGCCCAAGGAAGACAGGAAAACCCCTTTTGAATAAAAG
GTACATTAAGATCACAACCCCCGATACTCTCAAAAAAACATGGGGGGGGG
GCCCATCAGGGGCGAGGGGAGGAGTATTTTTTCACCCAGGAAAGGGGGGC
CAAAAAACACAAAGGACCAAAAGAGGGGGAGAGAAACACAAAAAGAGGGG
GGGGGGGAGAATCATAAAAAGGTGTCTGTAAAACATAAAACAGACTAAGT
ACTAGCATGAGCGTTTGAATGATGAGAATACTA
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