EY675147

Overview
NameEY675147
Unique NameEY675147
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1033
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_MYCA5 (Serine hydroxymethyltransferase OS=Mycoplasma arthritidis (strain 158L3-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 4.953e-33
Identity = 75/134 (55.97%), Postives = 89/134 (66.42%), Query Frame = 3
Query:   90 NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTS 491
            N  +   D +I DLI KE  RQ   IELIASEN+ S  V++A GS+LTNKY EG PG RYYGG EF+DEIE + + RA + F+        NVQPYSGS AN A Y A+L P D ++GL L SGGHLTHGY  S
Sbjct:    2 NKKVTLHDQDIADLINKESHRQEEHIELIASENYVSEDVMKAAGSSLTNKYGEGYPGKRYYGGCEFVDEIEKIAQERACKLFNAK----YANVQPYSGSVANAAIYMALLNPGDSVLGLSLDSGGHLTHGYRIS 131          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_CLOAB (Serine hydroxymethyltransferase OS=Clostridium acetobutylicum GN=glyA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 4.953e-33
Identity = 72/128 (56.25%), Postives = 91/128 (71.09%), Query Frame = 3
Query:   96 SLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            +++  D E++ +IE+E  RQ   IELIASENFTS AV+EA+GS LTNKY+EG PG RYYGG   +D++E L R RA + F  +      NVQP+SGS AN A Y AVL+P D IMG++L  GGHLTHG
Sbjct:    5 NIKVSDSEVYSIIEEENARQENNIELIASENFTSKAVMEAMGSYLTNKYAEGYPGKRYYGGCYVVDKVEELARERAKKLFKAE----HANVQPHSGSQANMAVYFAVLKPGDTIMGMNLTDGGHLTHG 128          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_CHLPB (Serine hydroxymethyltransferase OS=Chlorobium phaeobacteroides (strain BS1) GN=glyA PE=3 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 4.953e-33
Identity = 77/127 (60.63%), Postives = 86/127 (67.72%), Query Frame = 3
Query:   99 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            L+  D  I D I  E RRQ   +ELIASENF S AV+EA GS +TNKY+EG PG RYYGG EF+D  ENL R RA + F  D     VNVQP+SGS AN     AVL+P DRIMGLDL  GGHLTHG
Sbjct:    6 LQRQDKGIFDAITAEVRRQTETLELIASENFASRAVMEACGSVMTNKYAEGYPGKRYYGGCEFVDIAENLARDRAKKLFGCD----YVNVQPHSGSSANMGVLFAVLKPGDRIMGLDLSHGGHLTHG 128          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_LACSS (Serine hydroxymethyltransferase OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=glyA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 6.469e-33
Identity = 79/161 (49.07%), Postives = 101/161 (62.73%), Query Frame = 3
Query:   99 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG-----------YYTSGGKKISGELRFTSRACRTR 548
            L   DP I+DLI++E+ RQ   IELIASEN  S AV EA GS LTNKY+EG P  R+YGG E+ID+IE L   RA + F  D     VNVQP+SGS AN A Y A+LEP D+I+G++L  GGHLTHG           +Y+ G    + +L + S A + +
Sbjct:    2 LAKTDPVINDLIKQEENRQRHNIELIASENIVSGAVQEAQGSVLTNKYAEGYPNKRFYGGCEYIDQIETLAIERAKELFGAD----HVNVQPHSGSQANMAVYQALLEPGDKILGMNLTDGGHLTHGSPFNFSGQLYDFYSYGVADTNEQLDYASLAAKAQ 158          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_ANASP (Serine hydroxymethyltransferase OS=Anabaena sp. (strain PCC 7120) GN=glyA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 6.469e-33
Identity = 74/127 (58.27%), Postives = 89/127 (70.08%), Query Frame = 3
Query:   99 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            L   DP I  LI +E +RQ   +ELIASENFTS AV+ A GS LTNKY+EG+PG RYYGG EFID+IE +   RA Q F  D      NVQP+SG+ ANFA +  +L+P D+IMG+DL  GGHLTHG
Sbjct:    9 LTNSDPAIAGLINQELQRQRDHLELIASENFTSAAVLAAQGSVLTNKYAEGLPGKRYYGGCEFIDKIEQIAIDRAKQLFGAD----HANVQPHSGAQANFAVFLTLLKPGDKIMGMDLSHGGHLTHG 131          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_SYNJB (Serine hydroxymethyltransferase OS=Synechococcus sp. GN=glyA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 8.449e-33
Identity = 74/127 (58.27%), Postives = 89/127 (70.08%), Query Frame = 3
Query:   99 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            L   DP ++ LI++E  RQ   +E+IASENFTS AV+ A GS LTNKY+EG+PG RYYGG EFIDEIE L   RA Q F         NVQP+SG+ ANFA + A+L+P D IMG+DL  GGHLTHG
Sbjct:    4 LAETDPVVYRLIQQELNRQRDHLEMIASENFTSPAVLAAQGSVLTNKYAEGLPGKRYYGGCEFIDEIEQLAIDRAKQLFGAA----HANVQPHSGAQANFAVFLALLQPGDTIMGMDLSHGGHLTHG 126          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_SYNJA (Serine hydroxymethyltransferase OS=Synechococcus sp. (strain JA-3-3Ab) GN=glyA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 8.449e-33
Identity = 74/127 (58.27%), Postives = 89/127 (70.08%), Query Frame = 3
Query:   99 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            L   DP ++ LI++E  RQ   +E+IASENFTS AV+ A GS LTNKY+EG+PG RYYGG EFIDEIE L   RA Q F         NVQP+SG+ ANFA + A+L+P D IMG+DL  GGHLTHG
Sbjct:   11 LAETDPVVYRLIQQELNRQRDHLEMIASENFTSPAVLAAQGSVLTNKYAEGLPGKRYYGGCEFIDEIEQLAIDRAKQLFGAA----HANVQPHSGAQANFAVFLALLQPGDTIMGMDLAHGGHLTHG 133          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_NOSP7 (Serine hydroxymethyltransferase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=glyA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 8.449e-33
Identity = 73/127 (57.48%), Postives = 91/127 (71.65%), Query Frame = 3
Query:   99 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            L + DP I +LI  E +RQ   +ELIASENFTS AV+ A GS LTNKY+EG+PG RYYGG E+ID+IE L  +RA Q F         NVQP+SG+ ANFA + ++L+P D+IMG+DL  GGHLTHG
Sbjct:    9 LSSTDPAIAELINDELQRQRDHLELIASENFTSAAVLAAQGSVLTNKYAEGLPGKRYYGGCEYIDKIEQLAINRAKQIFGAA----HANVQPHSGAQANFAVFLSLLQPGDKIMGMDLSHGGHLTHG 131          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_METHJ (Serine hydroxymethyltransferase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=glyA PE=3 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 8.449e-33
Identity = 73/129 (56.59%), Postives = 87/129 (67.44%), Query Frame = 3
Query:   93 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            S LET DPEI  +I+KE  RQ  G+ELIASEN  S AV+EA GS +TNKY+EG PG RYYGG EF D  ENL R R    F  +      NVQP+SGS AN A Y  VL+P D+I+ ++L  GGHL+HG
Sbjct:    2 SYLETTDPEIAAIIDKETNRQINGLELIASENVVSRAVLEASGSIMTNKYAEGYPGKRYYGGCEFHDMAENLARDRVCSLFGAE----HANVQPHSGSQANMAVYFTVLKPSDKILSMNLSQGGHLSHG 126          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_HELMI (Serine hydroxymethyltransferase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=glyA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 8.449e-33
Identity = 72/135 (53.33%), Postives = 93/135 (68.89%), Query Frame = 3
Query:   75 VNEWGNSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            ++EW +  L  VDPE+   +++EK+RQ   IELIASENF S AV+EA GS LTNKY+EG PG RYYGG EF+D++E L   RA + F  +      NVQP+SG+ AN   Y A LEP D ++G++L  GGHLTHG
Sbjct:    1 MSEWKH--LHQVDPEVAAAMDREKKRQKNNIELIASENFVSEAVMEAAGSVLTNKYAEGYPGKRYYGGCEFVDQVERLAIERAKRLFGAE----HANVQPHSGANANMGVYFACLEPGDTVLGMNLAHGGHLTHG 129          
The following BLAST results are available for this feature:
BLAST of EY675147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_MYCA54.953e-3355.97Serine hydroxymethyltransferase OS=Mycoplasma arth... [more]
GLYA_CLOAB4.953e-3356.25Serine hydroxymethyltransferase OS=Clostridium ace... [more]
GLYA_CHLPB4.953e-3360.63Serine hydroxymethyltransferase OS=Chlorobium phae... [more]
GLYA_LACSS6.469e-3349.07Serine hydroxymethyltransferase OS=Lactobacillus s... [more]
GLYA_ANASP6.469e-3358.27Serine hydroxymethyltransferase OS=Anabaena sp. (s... [more]
GLYA_SYNJB8.449e-3358.27Serine hydroxymethyltransferase OS=Synechococcus s... [more]
GLYA_SYNJA8.449e-3358.27Serine hydroxymethyltransferase OS=Synechococcus s... [more]
GLYA_NOSP78.449e-3357.48Serine hydroxymethyltransferase OS=Nostoc punctifo... [more]
GLYA_METHJ8.449e-3356.59Serine hydroxymethyltransferase OS=Methanospirillu... [more]
GLYA_HELMI8.449e-3353.33Serine hydroxymethyltransferase OS=Heliobacterium ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-006-F12-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675147 ID=EY675147; Name=EY675147; organism=Citrus sinensis; type=EST; length=1033bp
CCACGCGTCCGCATTTTCCCTTTTTTTCGTTTTCAGTGAATCCAGAAAAC
GGAAAAAAAGAAAAAATGGATCCAGTGAACGAGTGGGGCAACTCATCTCT
TGAAACCGTGGACCCAGAAATTCACGACCTGATCGAGAAAGAGAAGCGCC
GACAATGCCGCGGCATCGAGCTCATCGCCTCCGAGAACTTCACCTCCTTC
GCCGTTATCGAAGCCCTCGGCAGCGCCCTCACCAACAAATACTCAGAGGG
AATGCCCGGCAACCGTTACTACGGAGGCAACGAATTCATCGACGAGATCG
AGAATCTCTGCCGGTCGAGAGCTTTACAAACTTTCCATTTGGACCCCACC
CAGTGGGGTGTCAACGTTCAGCCTTACTCCGGCTCGCCGGCCAACTTCGC
CGCTTACACGGCGGTGCTCGAGCCTCATGACCGTATCATGGGGCTGGACT
TGCCGTCCGGAGGGCATTTGACTCATGGGTATTACACTTCTGGCGGGAAA
AAAATATCGGGCGAACTTCGATTTACTTCGAGAGCTTGCCGTACAAGGTG
GAATTCCAAATACTGGGTATATTGATTACAATAAGTTGGGAGGAAAAAAG
GCGTTGGAAATTTTTAGGCCAAAAGTTGATTATTTTGCGGGGGGGAGGGG
GTTTCCCAAGGGATGGGGAATATGGCTAATTTCAAAGCCGTTGGCTAATA
AAAGGGGGGGGCCCCTTTTGCCCGAGGGAAAAGGGGGCAAAAAGACAAGG
GGCTTGGGTGGGGGCCCAAGGAAGACAGGAAAACCCCTTTTGAATAAAAG
GTACATTAAGATCACAACCCCCGATACTCTCAAAAAAACATGGGGGGGGG
GCCCATCAGGGGCGAGGGGAGGAGTATTTTTTCACCCAGGAAAGGGGGGC
CAAAAAACACAAAGGACCAAAAGAGGGGGAGAGAAACACAAAAAGAGGGG
GGGGGGGAGAATCATAAAAAGGTGTCTGTAAAACATAAAACAGACTAAGT
ACTAGCATGAGCGTTTGAATGATGAGAATACTA
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