EY675147

Overview
NameEY675147
Unique NameEY675147
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1033
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_AMOA5 (Serine hydroxymethyltransferase OS=Amoebophilus asiaticus (strain 5a2) GN=glyA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 8.449e-33
Identity = 74/123 (60.16%), Postives = 86/123 (69.92%), Query Frame = 3
Query:  111 DPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            D +I  LIEKE +RQ  G+ELIASENF S  ++EA GS LTNKY+EG+PG RYYGG E +DEIE L   RA   FH     W  NVQP+SGS AN A   AVLEP D+I+G +L  GGHLTHG
Sbjct:    4 DTQIFTLIEKEYQRQNEGLELIASENFVSQQIMEAAGSILTNKYAEGLPGRRYYGGCEIVDEIETLAIERAKSLFH---ASW-ANVQPHSGSQANAAVMFAVLEPGDKILGFNLAHGGHLTHG 122          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_SYNPX (Serine hydroxymethyltransferase OS=Synechococcus sp. (strain WH8102) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.104e-32
Identity = 75/130 (57.69%), Postives = 89/130 (68.46%), Query Frame = 3
Query:   90 NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            N  L   DP I  LIEKE++RQ   +ELIASENF S AV++A GS LTNKY+EG+P  RYYGG E +D IE L   RA + F      W  NVQP+SG+ ANFA + A+L+P D IMGLDL  GGHLTHG
Sbjct:   10 NKGLAAADPAIAALIEKEQQRQETHLELIASENFASRAVMDAQGSVLTNKYAEGLPSKRYYGGCEHVDAIEELAIERAKELF---GAAW-ANVQPHSGAQANFAVFLALLQPGDTIMGLDLSHGGHLTHG 135          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_CLOPE (Serine hydroxymethyltransferase OS=Clostridium perfringens GN=glyA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.104e-32
Identity = 71/128 (55.47%), Postives = 89/128 (69.53%), Query Frame = 3
Query:   96 SLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            +LE  D +I  L++KEK RQ   IELIASENF S AV+EA+GS LTNKY+EG P  RYYGG   +DE+E+L R R  + F  +      NVQP+SGS AN A Y ++LEP D ++G+DL  GGHLTHG
Sbjct:    5 NLEREDEQIAHLVQKEKERQENSIELIASENFVSKAVMEAMGSYLTNKYAEGYPSKRYYGGCHVVDEVEDLARERVKKLFGAE----HANVQPHSGSQANMAVYFSILEPGDTVLGMDLSHGGHLTHG 128          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_CLOP1 (Serine hydroxymethyltransferase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.104e-32
Identity = 71/128 (55.47%), Postives = 89/128 (69.53%), Query Frame = 3
Query:   96 SLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            +LE  D +I  L++KEK RQ   IELIASENF S AV+EA+GS LTNKY+EG P  RYYGG   +DE+E+L R R  + F  +      NVQP+SGS AN A Y ++LEP D ++G+DL  GGHLTHG
Sbjct:    5 NLEREDEQIAHLVQKEKERQENSIELIASENFVSKAVMEAMGSYLTNKYAEGYPSKRYYGGCHVVDEVEDLARERVKKLFGAE----HANVQPHSGSQANMAVYFSILEPGDTVLGMDLSHGGHLTHG 128          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_ACHLI (Serine hydroxymethyltransferase OS=Acholeplasma laidlawii (strain PG-8A) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.104e-32
Identity = 73/132 (55.30%), Postives = 92/132 (69.70%), Query Frame = 3
Query:   96 SLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTS 491
            +L+  D E+ + I++E  RQ   IELIASENF S AV+EA GS LTNKY+EG P  RYYGG EF+D++E L + R  Q F+       VNVQP+SGS AN A Y A+L P DR++G+DL +GGHLTHGY  S
Sbjct:    2 TLKDYDLELFNAIQREDNRQKEHIELIASENFVSDAVLEAQGSILTNKYAEGYPNKRYYGGCEFVDQVEILAQDRLKQIFNAK----FVNVQPHSGSQANAAVYQALLSPGDRVLGMDLNAGGHLTHGYKLS 129          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_FRATW (Serine hydroxymethyltransferase OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.441e-32
Identity = 76/144 (52.78%), Postives = 95/144 (65.97%), Query Frame = 3
Query:   93 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISGELRF 524
            +SL+  D EI D IE E +RQ   +ELIASEN+ S AV+EA GS LTNKY+EG  G RYYGG EF+D  E L   RA Q F +D      NVQP+SGS AN A Y AVL+P D ++G+DL +GGHLTHG   +   KI   +++
Sbjct:    7 NSLKNTDKEIFDAIELEVKRQHEHVELIASENYASPAVMEAQGSQLTNKYAEGYHGKRYYGGCEFVDIAEKLAIERAQQLFGVD----YANVQPHSGSQANAAVYNAVLKPGDTVLGMDLGAGGHLTHGSKVNFSGKIYNSIQY 146          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_FRATT (Serine hydroxymethyltransferase OS=Francisella tularensis subsp. tularensis GN=glyA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.441e-32
Identity = 76/144 (52.78%), Postives = 95/144 (65.97%), Query Frame = 3
Query:   93 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISGELRF 524
            +SL+  D EI D IE E +RQ   +ELIASEN+ S AV+EA GS LTNKY+EG  G RYYGG EF+D  E L   RA Q F +D      NVQP+SGS AN A Y AVL+P D ++G+DL +GGHLTHG   +   KI   +++
Sbjct:    7 NSLKNTDKEIFDAIELEVKRQHEHVELIASENYASPAVMEAQGSQLTNKYAEGYHGKRYYGGCEFVDIAEKLAIERAQQLFGVD----YANVQPHSGSQANAAVYNAVLKPGDTVLGMDLGAGGHLTHGSKVNFSGKIYNSIQY 146          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_FRATO (Serine hydroxymethyltransferase OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.441e-32
Identity = 76/144 (52.78%), Postives = 95/144 (65.97%), Query Frame = 3
Query:   93 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISGELRF 524
            +SL+  D EI D IE E +RQ   +ELIASEN+ S AV+EA GS LTNKY+EG  G RYYGG EF+D  E L   RA Q F +D      NVQP+SGS AN A Y AVL+P D ++G+DL +GGHLTHG   +   KI   +++
Sbjct:    7 NSLKNTDKEIFDAIELEVKRQHEHVELIASENYASPAVMEAQGSQLTNKYAEGYHGKRYYGGCEFVDIAEKLAIERAQQLFGVD----YANVQPHSGSQANAAVYNAVLKPGDTVLGMDLGAGGHLTHGSKVNFSGKIYNSIQY 146          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_FRATN (Serine hydroxymethyltransferase OS=Francisella tularensis subsp. novicida (strain U112) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.441e-32
Identity = 76/144 (52.78%), Postives = 95/144 (65.97%), Query Frame = 3
Query:   93 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISGELRF 524
            +SL+  D EI D IE E +RQ   +ELIASEN+ S AV+EA GS LTNKY+EG  G RYYGG EF+D  E L   RA Q F +D      NVQP+SGS AN A Y AVL+P D ++G+DL +GGHLTHG   +   KI   +++
Sbjct:    7 NSLKNTDKEIFDAIELEVKRQHEHVELIASENYASPAVMEAQGSQLTNKYAEGYHGKRYYGGCEFVDIAEKLAIERAQQLFGVD----YANVQPHSGSQANAAVYNAVLKPGDTVLGMDLGAGGHLTHGSKVNFSGKIYNSIQY 146          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_FRATM (Serine hydroxymethyltransferase OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.441e-32
Identity = 76/144 (52.78%), Postives = 95/144 (65.97%), Query Frame = 3
Query:   93 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISGELRF 524
            +SL+  D EI D IE E +RQ   +ELIASEN+ S AV+EA GS LTNKY+EG  G RYYGG EF+D  E L   RA Q F +D      NVQP+SGS AN A Y AVL+P D ++G+DL +GGHLTHG   +   KI   +++
Sbjct:    7 NSLKNTDKEIFDAIELEVKRQHEHVELIASENYASPAVMEAQGSQLTNKYAEGYHGKRYYGGCEFVDIAEKLAIERAQQLFGVD----YANVQPHSGSQANAAVYNAVLKPGDTVLGMDLGAGGHLTHGSKVNFSGKIYNSIQY 146          
The following BLAST results are available for this feature:
BLAST of EY675147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_AMOA58.449e-3360.16Serine hydroxymethyltransferase OS=Amoebophilus as... [more]
GLYA_SYNPX1.104e-3257.69Serine hydroxymethyltransferase OS=Synechococcus s... [more]
GLYA_CLOPE1.104e-3255.47Serine hydroxymethyltransferase OS=Clostridium per... [more]
GLYA_CLOP11.104e-3255.47Serine hydroxymethyltransferase OS=Clostridium per... [more]
GLYA_ACHLI1.104e-3255.30Serine hydroxymethyltransferase OS=Acholeplasma la... [more]
GLYA_FRATW1.441e-3252.78Serine hydroxymethyltransferase OS=Francisella tul... [more]
GLYA_FRATT1.441e-3252.78Serine hydroxymethyltransferase OS=Francisella tul... [more]
GLYA_FRATO1.441e-3252.78Serine hydroxymethyltransferase OS=Francisella tul... [more]
GLYA_FRATN1.441e-3252.78Serine hydroxymethyltransferase OS=Francisella tul... [more]
GLYA_FRATM1.441e-3252.78Serine hydroxymethyltransferase OS=Francisella tul... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-006-F12-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675147 ID=EY675147; Name=EY675147; organism=Citrus sinensis; type=EST; length=1033bp
CCACGCGTCCGCATTTTCCCTTTTTTTCGTTTTCAGTGAATCCAGAAAAC
GGAAAAAAAGAAAAAATGGATCCAGTGAACGAGTGGGGCAACTCATCTCT
TGAAACCGTGGACCCAGAAATTCACGACCTGATCGAGAAAGAGAAGCGCC
GACAATGCCGCGGCATCGAGCTCATCGCCTCCGAGAACTTCACCTCCTTC
GCCGTTATCGAAGCCCTCGGCAGCGCCCTCACCAACAAATACTCAGAGGG
AATGCCCGGCAACCGTTACTACGGAGGCAACGAATTCATCGACGAGATCG
AGAATCTCTGCCGGTCGAGAGCTTTACAAACTTTCCATTTGGACCCCACC
CAGTGGGGTGTCAACGTTCAGCCTTACTCCGGCTCGCCGGCCAACTTCGC
CGCTTACACGGCGGTGCTCGAGCCTCATGACCGTATCATGGGGCTGGACT
TGCCGTCCGGAGGGCATTTGACTCATGGGTATTACACTTCTGGCGGGAAA
AAAATATCGGGCGAACTTCGATTTACTTCGAGAGCTTGCCGTACAAGGTG
GAATTCCAAATACTGGGTATATTGATTACAATAAGTTGGGAGGAAAAAAG
GCGTTGGAAATTTTTAGGCCAAAAGTTGATTATTTTGCGGGGGGGAGGGG
GTTTCCCAAGGGATGGGGAATATGGCTAATTTCAAAGCCGTTGGCTAATA
AAAGGGGGGGGCCCCTTTTGCCCGAGGGAAAAGGGGGCAAAAAGACAAGG
GGCTTGGGTGGGGGCCCAAGGAAGACAGGAAAACCCCTTTTGAATAAAAG
GTACATTAAGATCACAACCCCCGATACTCTCAAAAAAACATGGGGGGGGG
GCCCATCAGGGGCGAGGGGAGGAGTATTTTTTCACCCAGGAAAGGGGGGC
CAAAAAACACAAAGGACCAAAAGAGGGGGAGAGAAACACAAAAAGAGGGG
GGGGGGGAGAATCATAAAAAGGTGTCTGTAAAACATAAAACAGACTAAGT
ACTAGCATGAGCGTTTGAATGATGAGAATACTA
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