EY675147

Overview
NameEY675147
Unique NameEY675147
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1033
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_FRATH (Serine hydroxymethyltransferase OS=Francisella tularensis subsp. holarctica (strain LVS) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.441e-32
Identity = 76/144 (52.78%), Postives = 95/144 (65.97%), Query Frame = 3
Query:   93 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISGELRF 524
            +SL+  D EI D IE E +RQ   +ELIASEN+ S AV+EA GS LTNKY+EG  G RYYGG EF+D  E L   RA Q F +D      NVQP+SGS AN A Y AVL+P D ++G+DL +GGHLTHG   +   KI   +++
Sbjct:    7 NSLKNTDKEIFDAIELEVKRQHEHVELIASENYASPAVMEAQGSQLTNKYAEGYHGKRYYGGCEFVDIAEKLAIERAQQLFGVD----YANVQPHSGSQANAAVYNAVLKPGDTVLGMDLGAGGHLTHGSKVNFSGKIYNSIQY 146          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_FRATF (Serine hydroxymethyltransferase OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.441e-32
Identity = 76/144 (52.78%), Postives = 95/144 (65.97%), Query Frame = 3
Query:   93 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISGELRF 524
            +SL+  D EI D IE E +RQ   +ELIASEN+ S AV+EA GS LTNKY+EG  G RYYGG EF+D  E L   RA Q F +D      NVQP+SGS AN A Y AVL+P D ++G+DL +GGHLTHG   +   KI   +++
Sbjct:    7 NSLKNTDKEIFDAIELEVKRQHEHVELIASENYASPAVMEAQGSQLTNKYAEGYHGKRYYGGCEFVDIAEKLAIERAQQLFGVD----YANVQPHSGSQANAAVYNAVLKPGDTVLGMDLGAGGHLTHGSKVNFSGKIYNSIQY 146          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_FRAT1 (Serine hydroxymethyltransferase OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.441e-32
Identity = 76/144 (52.78%), Postives = 95/144 (65.97%), Query Frame = 3
Query:   93 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISGELRF 524
            +SL+  D EI D IE E +RQ   +ELIASEN+ S AV+EA GS LTNKY+EG  G RYYGG EF+D  E L   RA Q F +D      NVQP+SGS AN A Y AVL+P D ++G+DL +GGHLTHG   +   KI   +++
Sbjct:    7 NSLKNTDKEIFDAIELEVKRQHEHVELIASENYASPAVMEAQGSQLTNKYAEGYHGKRYYGGCEFVDIAEKLAIERAQQLFGVD----YANVQPHSGSQANAAVYNAVLKPGDTVLGMDLGAGGHLTHGSKVNFSGKIYNSIQY 146          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_ELUMP (Serine hydroxymethyltransferase OS=Elusimicrobium minutum (strain Pei191) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.441e-32
Identity = 71/130 (54.62%), Postives = 90/130 (69.23%), Query Frame = 3
Query:   93 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGY 482
            S+L+  D  + D +EKE  RQ   +ELIASENFTS +V+EA GS LTNKY+EG PG RYYGG EF+D +E L   RA Q F  +      NVQP+SG+ AN AAY A++ P D ++GL+L  GGHLTHG+
Sbjct:    3 SNLQKTDKAVFDAVEKELGRQRTKLELIASENFTSLSVMEAQGSILTNKYAEGYPGKRYYGGCEFVDMVETLAIERAKQIFGAE----HANVQPHSGAQANMAAYLALINPGDTVLGLNLSHGGHLTHGH 128          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_ANASK (Serine hydroxymethyltransferase OS=Anaeromyxobacter sp. (strain K) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.441e-32
Identity = 72/127 (56.69%), Postives = 87/127 (68.50%), Query Frame = 3
Query:   99 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            L   DP+I  LI +E RRQ  G+ELIASENF S AV+EALGS LTNKY+EG PG RYYGG E +D++E L   RA Q F  D      NVQP++GS AN AAY A+ +P D ++ + L  GGHLTHG
Sbjct:    7 LAEADPQIAKLIREETRRQAEGLELIASENFVSPAVLEALGSTLTNKYAEGYPGKRYYGGCEVVDQVEQLAIDRAKQLFGAD----HANVQPHAGSQANMAAYFALAKPGDTVLAMSLNFGGHLTHG 129          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_ANADE (Serine hydroxymethyltransferase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.441e-32
Identity = 72/127 (56.69%), Postives = 87/127 (68.50%), Query Frame = 3
Query:   99 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            L   DP+I  LI +E RRQ  G+ELIASENF S AV+EALGS LTNKY+EG PG RYYGG E +D++E L   RA Q F  D      NVQP++GS AN AAY A+ +P D ++ + L  GGHLTHG
Sbjct:    7 LAEADPQIAKLIREETRRQAEGLELIASENFVSPAVLEALGSTLTNKYAEGYPGKRYYGGCEVVDQVEQLAIDRAKQLFGAD----HANVQPHAGSQANMAAYFALAKPGDTVLAMSLNFGGHLTHG 129          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_ANAD2 (Serine hydroxymethyltransferase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.441e-32
Identity = 72/127 (56.69%), Postives = 87/127 (68.50%), Query Frame = 3
Query:   99 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            L   DP+I  LI +E RRQ  G+ELIASENF S AV+EALGS LTNKY+EG PG RYYGG E +D++E L   RA Q F  D      NVQP++GS AN AAY A+ +P D ++ + L  GGHLTHG
Sbjct:    7 LAEADPQIAKLIREETRRQAEGLELIASENFVSPAVLEALGSTLTNKYAEGYPGKRYYGGCEVVDQVEQLAIDRAKQLFGAD----HANVQPHAGSQANMAAYFALAKPGDTVLAMSLNFGGHLTHG 129          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_PROMA (Serine hydroxymethyltransferase OS=Prochlorococcus marinus GN=glyA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.882e-32
Identity = 75/130 (57.69%), Postives = 89/130 (68.46%), Query Frame = 3
Query:   90 NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            NS L   DP+I  LI +E  RQ   +ELIASENF S AV+EA GS LTNKY+EG+P  RYYGG E ID IE L  +RA   F+    +W  NVQP+SG+ ANFA + A+L P D IMG+DL  GGHLTHG
Sbjct:    5 NSDLRNTDPDISFLINQELLRQQTHLELIASENFASEAVMEAQGSVLTNKYAEGLPNKRYYGGCEHIDAIEQLAITRAQTLFN---AEW-ANVQPHSGAQANFAVFLALLNPGDTIMGMDLSHGGHLTHG 130          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_METPE (Serine hydroxymethyltransferase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.882e-32
Identity = 75/130 (57.69%), Postives = 90/130 (69.23%), Query Frame = 3
Query:   93 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLE-PHDRIMGLDLPSGGHLTHG 479
            S L T DPEI +LIE E+ RQ  G+ELIASEN  S AV+EA+GS LTNKY+EG PG RYYGG EF D IENL R R  Q F+ +      NVQP+SG+ AN A Y +V+E   DR+M + L  GGHL+HG
Sbjct:    2 SYLATADPEIAELIECERLRQVNGLELIASENLVSKAVLEAMGSILTNKYAEGYPGKRYYGGCEFHDRIENLARDRLKQLFNAE----HANVQPHSGTQANMAVYFSVMECGKDRMMSMSLTQGGHLSHG 127          
BLAST of EY675147 vs. ExPASy Swiss-Prot
Match: GLYA_CLOK5 (Serine hydroxymethyltransferase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.882e-32
Identity = 72/138 (52.17%), Postives = 95/138 (68.84%), Query Frame = 3
Query:   93 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKI 506
            + L+  D +I+ +IE+E  RQ  GIELIASENFTS +V+EA+GS LTNKY+EG PG RYYGG   +D+ E+L R R  + F+ +     VNVQP+SGS AN A Y +VL+P D ++G+ L  GGHLTHG   S   K+
Sbjct:    4 NELKNTDKDIYGIIEEEWERQKNGIELIASENFTSKSVMEAMGSFLTNKYAEGYPGKRYYGGCYIVDKAEDLARDRMKKLFNAE----HVNVQPHSGSQANMAVYMSVLKPGDTVLGMSLNHGGHLTHGSKVSFSGKL 137          
The following BLAST results are available for this feature:
BLAST of EY675147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_FRATH1.441e-3252.78Serine hydroxymethyltransferase OS=Francisella tul... [more]
GLYA_FRATF1.441e-3252.78Serine hydroxymethyltransferase OS=Francisella tul... [more]
GLYA_FRAT11.441e-3252.78Serine hydroxymethyltransferase OS=Francisella tul... [more]
GLYA_ELUMP1.441e-3254.62Serine hydroxymethyltransferase OS=Elusimicrobium ... [more]
GLYA_ANASK1.441e-3256.69Serine hydroxymethyltransferase OS=Anaeromyxobacte... [more]
GLYA_ANADE1.441e-3256.69Serine hydroxymethyltransferase OS=Anaeromyxobacte... [more]
GLYA_ANAD21.441e-3256.69Serine hydroxymethyltransferase OS=Anaeromyxobacte... [more]
GLYA_PROMA1.882e-3257.69Serine hydroxymethyltransferase OS=Prochlorococcus... [more]
GLYA_METPE1.882e-3257.69Serine hydroxymethyltransferase OS=Methanosphaerul... [more]
GLYA_CLOK51.882e-3252.17Serine hydroxymethyltransferase OS=Clostridium klu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-006-F12-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675147 ID=EY675147; Name=EY675147; organism=Citrus sinensis; type=EST; length=1033bp
CCACGCGTCCGCATTTTCCCTTTTTTTCGTTTTCAGTGAATCCAGAAAAC
GGAAAAAAAGAAAAAATGGATCCAGTGAACGAGTGGGGCAACTCATCTCT
TGAAACCGTGGACCCAGAAATTCACGACCTGATCGAGAAAGAGAAGCGCC
GACAATGCCGCGGCATCGAGCTCATCGCCTCCGAGAACTTCACCTCCTTC
GCCGTTATCGAAGCCCTCGGCAGCGCCCTCACCAACAAATACTCAGAGGG
AATGCCCGGCAACCGTTACTACGGAGGCAACGAATTCATCGACGAGATCG
AGAATCTCTGCCGGTCGAGAGCTTTACAAACTTTCCATTTGGACCCCACC
CAGTGGGGTGTCAACGTTCAGCCTTACTCCGGCTCGCCGGCCAACTTCGC
CGCTTACACGGCGGTGCTCGAGCCTCATGACCGTATCATGGGGCTGGACT
TGCCGTCCGGAGGGCATTTGACTCATGGGTATTACACTTCTGGCGGGAAA
AAAATATCGGGCGAACTTCGATTTACTTCGAGAGCTTGCCGTACAAGGTG
GAATTCCAAATACTGGGTATATTGATTACAATAAGTTGGGAGGAAAAAAG
GCGTTGGAAATTTTTAGGCCAAAAGTTGATTATTTTGCGGGGGGGAGGGG
GTTTCCCAAGGGATGGGGAATATGGCTAATTTCAAAGCCGTTGGCTAATA
AAAGGGGGGGGCCCCTTTTGCCCGAGGGAAAAGGGGGCAAAAAGACAAGG
GGCTTGGGTGGGGGCCCAAGGAAGACAGGAAAACCCCTTTTGAATAAAAG
GTACATTAAGATCACAACCCCCGATACTCTCAAAAAAACATGGGGGGGGG
GCCCATCAGGGGCGAGGGGAGGAGTATTTTTTCACCCAGGAAAGGGGGGC
CAAAAAACACAAAGGACCAAAAGAGGGGGAGAGAAACACAAAAAGAGGGG
GGGGGGGAGAATCATAAAAAGGTGTCTGTAAAACATAAAACAGACTAAGT
ACTAGCATGAGCGTTTGAATGATGAGAATACTA
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