EY675132

Overview
NameEY675132
Unique NameEY675132
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1026
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYM_RABIT (Serine hydroxymethyltransferase, mitochondrial OS=Oryctolagus cuniculus GN=SHMT2 PE=1 SV=2)

HSP 1 Score: 254.988 bits (650), Expect = 5.197e-67
Identity = 132/222 (59.46%), Postives = 158/222 (71.17%), Query Frame = 2
Query:   17 PFFSFSVNPENGKKEKM---DPVNEW-GNSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQ 670
            P    +V  ++GK  +    +    W G  SL   DPE+ +L+++EK RQCRG+ELIASENF   A +EALGS L NKYSEG PG RYYGG E +DEIE LC+ RAL+ F LDP QWGVNVQPYSGSPAN AAYTA+L+PHDRIMGLDLP GGHLTHG Y S  K++SATSI  ES+PYK+N  TG IDY +L   A  FR +LII G SA  R  +YA+ +
Sbjct:   18 PLVRTAVRAQHGKAAQTQTGEASRGWTGQESLSDTDPEMWELLQREKDRQCRGLELIASENFCIRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAAYTALLQPHDRIMGLDLPDGGHLTHG-YMSDVKRVSATSIFFESMPYKLNPQTGLIDYEQLALTARLFRPRLIIAGTSAYARLIDYARMR 238          
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYM_BOVIN (Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus GN=SHMT2 PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 5.197e-67
Identity = 128/195 (65.64%), Postives = 149/195 (76.41%), Query Frame = 2
Query:   86 GNSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQ 670
            G  SL   DPE+ +L+ +EK RQCRG+ELIASENF S A +EALGS L NKYSEG PG RYYGG E +DEIE LC+ RAL+ F LDP QWGVNVQPYSGSPAN AAYTA+L+PHDRIMGLDLP GGHLTHG Y S  K+ISATSI  ES+PYK+N  TG IDY++L   A  F+ +LII G SA  R  +YA+ +
Sbjct:   45 GQESLSDSDPEMWELLRREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAAYTALLQPHDRIMGLDLPDGGHLTHG-YMSDVKRISATSIFFESMPYKLNPQTGLIDYDQLALTARLFKPRLIIAGTSAYARLIDYARMR 238          
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYC_CAEEL (Serine hydroxymethyltransferase OS=Caenorhabditis elegans GN=mel-32 PE=1 SV=2)

HSP 1 Score: 254.218 bits (648), Expect = 8.864e-67
Identity = 137/256 (53.52%), Postives = 172/256 (67.19%), Query Frame = 2
Query:   98 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWG----GPFARGIGLKSMAFVAGPGNCQPLLNTGPQIPQPPTPKKLGGGPRGGDRFLPPG 853
            +E VDPE+ D+++ EK+RQ RG+ELIASENFTS AV++ALGSA+ NKYSEG PG RYYGGNEFID++E LC+ RAL+ F LDP +WGVNVQP SGSPANFA YTA++  + RIMGLDLP GGHLTHG++T   +K+SATS   +SLPYKV+ +TG IDY+KLE+ A+ FR K II G S   R  +Y +F+  A K G       A   GL +   +  P     ++ T        T  K   GPRG   F   G
Sbjct:   52 VEKVDPEVFDIMKNEKKRQRRGLELIASENFTSKAVMDALGSAMCNKYSEGYPGARYYGGNEFIDQMELLCQKRALEVFGLDPAKWGVNVQPLSGSPANFAVYTAIVGSNGRIMGLDLPDGGHLTHGFFTP-ARKVSATSEFFQSLPYKVDPTTGLIDYDKLEQNAMLFRPKAIIAGVSCYARHLDYERFRKIATKAGAYLMSDMAHISGLVAAGLIPSPFEYSDVVTT--------TTHKSLRGPRGALIFYRKG 298          
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYC_MOUSE (Serine hydroxymethyltransferase, cytosolic OS=Mus musculus GN=Shmt1 PE=1 SV=2)

HSP 1 Score: 253.832 bits (647), Expect = 1.158e-66
Identity = 128/198 (64.65%), Postives = 150/198 (75.76%), Query Frame = 2
Query:   98 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWG 691
            L+  D E++ +I+KE  RQ  G+ELIASENF S AV+EALGS+L NKYSEG PG RYYGG EFIDE+E LC+ RALQ +HLDP  WGVNVQPYSGSPANFA YTA++EPH RIMGLDLP GGHLTHG+ T   KKISATSI  ES+PYKV   TGYI+Y++LEE A  F  KLII G S   R  +YA+ +  A+  G
Sbjct:   20 LKDSDAEVYSIIKKESNRQRVGLELIASENFASRAVLEALGSSLNNKYSEGYPGQRYYGGTEFIDELEMLCQKRALQAYHLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTD-KKKISATSIFFESMPYKVYPETGYINYDQLEENASLFHPKLIIAGTSCYSRNLDYARLRKIADDNG 216          
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYC_RABIT (Serine hydroxymethyltransferase, cytosolic OS=Oryctolagus cuniculus GN=SHMT1 PE=1 SV=2)

HSP 1 Score: 252.292 bits (643), Expect = 3.368e-66
Identity = 131/215 (60.93%), Postives = 153/215 (71.16%), Query Frame = 2
Query:   98 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWGGPFARGIGLKSMAFVAG 742
            L+  D E++D+I+KE  RQ  G+ELIASENF S AV+EALGS L NKYSEG PG RYYGG E IDE+E LC+ RALQ + LDP  WGVNVQPYSGSPANFA YTA++EPH RIMGLDLP GGHLTHG+ T   KKISATSI  ES+ YKVN  TGYIDY++LEE A  F  KLII G S   R  +Y + +  A++ G      +   S   VAG
Sbjct:   26 LKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTD-KKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAG 239          
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYC_SHEEP (Serine hydroxymethyltransferase, cytosolic OS=Ovis aries GN=SHMT1 PE=1 SV=3)

HSP 1 Score: 250.751 bits (639), Expect = 9.801e-66
Identity = 127/198 (64.14%), Postives = 150/198 (75.76%), Query Frame = 2
Query:   98 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWG 691
            L+  D E++++I+KE  RQ  G+ELIASENF S AV+EALGS L NKYSEG PG RYYGG EFIDE+E LC+ RALQ + LDP  WGVNVQPYSGSPANFA YTA++EPH RIMGLDLP GGHLTHG+ T   KKISATSI  ES+PYKVN  TGYI+Y++LEE A  F  +LII G S   R  +YA+ +  A+  G
Sbjct:   26 LKDNDVEVYNIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGGTEFIDELEVLCQKRALQVYGLDPECWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTD-KKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPRLIIAGTSCYSRNLDYARLRKIADDNG 222          
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYC_BOVIN (Serine hydroxymethyltransferase, cytosolic OS=Bos taurus GN=SHMT1 PE=2 SV=3)

HSP 1 Score: 248.054 bits (632), Expect = 6.353e-65
Identity = 130/215 (60.47%), Postives = 155/215 (72.09%), Query Frame = 2
Query:   98 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWGGPFARGIGLKSMAFVAG 742
            L+  D E++++I+KE  RQ  G+ELIASENF S AV+EALGS L NKYSEG PG RYYGG EFIDE+E LC+ RALQ + LD   WGVNVQPYSGSPANFA YTA++EPH RIMGLDLP GGHLTHG+ T   KKISATSI  ES+PYKVN  TGYI+Y++LEE A  F  +LII G S   R  +YA+ +  A+  G        +  MA V+G
Sbjct:   26 LKDNDVEVYNIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGGTEFIDELEVLCQKRALQVYGLDSQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTD-KKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPRLIIAGTSCYSRNLDYARLRKIADDNGAYL-----MADMAHVSG 234          
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYC_CAEBR (Serine hydroxymethyltransferase OS=Caenorhabditis briggsae GN=mel-32 PE=3 SV=3)

HSP 1 Score: 247.284 bits (630), Expect = 1.084e-64
Identity = 133/261 (50.96%), Postives = 173/261 (66.28%), Query Frame = 2
Query:   98 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWG----GPFARGIGLKSMAFVAGPGNCQPLLNTGPQIPQPPTPKKLGGGPRGGDRFLPPGKGPLN 868
            +E +DPE+ ++++ EK RQ RG+ELIASENFTS AV++ALGSA+ NKYSEG PG RYYGGNEFID++E LC+ RAL+ F LDP +WGVNVQ  SGSPANFA YTA++  + RIMGLDLP GGHLTHG++T   +K+SATS   +S+PYKV++ +G IDY+KLEE A+ FR K++I G S   R  +Y +F+  A K G       A   GL +   +  P     ++ T        T  K   GPRG   F   G   +N
Sbjct:   56 VEKIDPEVFNIMKNEKSRQRRGLELIASENFTSKAVMDALGSAMCNKYSEGYPGARYYGGNEFIDQMEILCQKRALEVFGLDPAKWGVNVQSLSGSPANFAVYTALVGANGRIMGLDLPDGGHLTHGFFTP-ARKVSATSEFFQSMPYKVDAQSGLIDYDKLEENAMLFRPKVLIAGVSCYARHLDYERFRKIATKAGAYLMSDMAHISGLVAAGLIPSPFEYSDVVTT--------TTHKSLRGPRGAMIFYRKGVRSVN 307          
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYC_SCHPO (Probable serine hydroxymethyltransferase, cytosolic OS=Schizosaccharomyces pombe GN=shm2 PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 4.711e-60
Identity = 126/256 (49.22%), Postives = 158/256 (61.72%), Query Frame = 2
Query:   98 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWGG----PFARGIGLKSMAFVAGPGNCQPLLNTGPQIPQPPTPKKLGGGPRGGDRFLPPG 853
            L   DP ++ ++E EK RQ   I LIASENFTS AV++ALGS + NKYSEG PG RYYGGNEFID+ E LC++RAL+ FHLD  +WGVNVQP+SGSPAN  AY AV++PHDR+MGLDLP GGHL+HG+ T   K ISA S    ++PY VN  TG IDY+ LE+ A+ FR K+I+ G SA  R  +Y + +   E          A   GL +   +  P     ++ T        T  K   GPRG   F   G
Sbjct:   18 LAECDPTVYKILESEKSRQKESIALIASENFTSRAVMDALGSIMQNKYSEGYPGARYYGGNEFIDQAERLCQTRALEAFHLDGEKWGVNVQPHSGSPANLQAYQAVMKPHDRLMGLDLPHGGHLSHGFSTP-QKAISAVSTYFSTMPYNVNKETGIIDYDSLEKAAIQFRPKVIVAGASAYARLVDYKRMRKITEMCNAYLLCDMAHISGLVAAGVIPSPFEYADIVTT--------TTHKSLRGPRGAMIFYRKG 264          
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYM_NEUCR (Putative serine hydroxymethyltransferase, mitochondrial OS=Neurospora crassa GN=NCU05805 PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 5.759e-58
Identity = 125/248 (50.40%), Postives = 158/248 (63.71%), Query Frame = 2
Query:  122 HDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWG----GPFARGIGLKSMAFVAGPGNCQPLLNTGPQIPQPPTPKKLGGGPRGGDRFLPPG 853
            +D  +KEK+RQ + I LI SENFTS AV++ALGS + NKYSEG PG RYYGGNEFID  E LC+ RAL+TF LDP +WGVNVQ  SG+PAN   Y+A+++ HDR+MGLDLP GGHL+HGY T   KKIS  S   E+LPY+++  TGYIDYNKLEE A+ +R K+I+ G SA  R  +YA+ +   +K         A   GL +   + GP     ++ T        T  K   GPRG   F   G
Sbjct:   63 NDNQQKEKQRQKQFINLIPSENFTSQAVLDALGSPMQNKYSEGYPGARYYGGNEFIDASERLCQDRALETFGLDPKEWGVNVQALSGAPANLYVYSALMDTHDRLMGLDLPHGGHLSHGYQTP-TKKISFISKYFETLPYRLDEKTGYIDYNKLEELAITYRPKIIVAGASAYSRLIDYARLREICDKVNAYLMADMAHISGLVAAKVMPGPFTHADIVTT--------TSHKSLRGPRGAMIFFRRG 301          
The following BLAST results are available for this feature:
BLAST of EY675132 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYM_RABIT5.197e-6759.46Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_BOVIN5.197e-6765.64Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_CAEEL8.864e-6753.52Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYC_MOUSE1.158e-6664.65Serine hydroxymethyltransferase, cytosolic OS=Mus ... [more]
GLYC_RABIT3.368e-6660.93Serine hydroxymethyltransferase, cytosolic OS=Oryc... [more]
GLYC_SHEEP9.801e-6664.14Serine hydroxymethyltransferase, cytosolic OS=Ovis... [more]
GLYC_BOVIN6.353e-6560.47Serine hydroxymethyltransferase, cytosolic OS=Bos ... [more]
GLYC_CAEBR1.084e-6450.96Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYC_SCHPO4.711e-6049.22Probable serine hydroxymethyltransferase, cytosoli... [more]
GLYM_NEUCR5.759e-5850.40Putative serine hydroxymethyltransferase, mitochon... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-006-E06-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675132 ID=EY675132; Name=EY675132; organism=Citrus sinensis; type=EST; length=1026bp
CACGCGTCCGCATTTTCCCTTTTTTTCCTTTTCAGTGAATCCAGAAAACG
GAAAAAAAGAAAAAATGGATCCAGTGAACGAGTGGGGCAACTCATCTCTT
GAAACCGTGGACCCAGAAATTCACGACCTGATCGAGAAAGAGAAGCGCCG
ACAATGCCGCGGCATCGAGCTCATCGCCTCCGAGAACTTCACCTCCTTCG
CCGTTATCGAAGCCCTCGGCAGCGCCCTCACCAACAAATACTCAGAGGGA
ATGCCCGGCAACCGTTACTACGGAGGCAACGAATTCATCGACGAGATCGA
GAATCTCTGCCGGTCGAGAGCTTTACAAACTTTCCATTTGGACCCCACCC
AGTGGGGTGTCAACGTTCAGCCTTACTCCGGCTCGCCGGCCAACTTCGCC
GCTTACACGGCGGTGCTCGAGCCTCATGACCGTATCATGGGGCTGGACTT
GCCGTCCGGAGGGCATTTGACTCATGGGTATTACACTTCTGGCGGGAAAA
AGATATCGGCGACTTCGATTTTACTCGAGAGCTTGCCGTACAAGGTGAAT
TCGAGTACTGGGTATATTGATTACAATAAGTTGGAGGAGAAAGCGTTGGA
TTTTAGGGCGAAGTTGATCATTTGCGGGGGGAGTGCGTAACCAAGGGAAT
GGGAATATGCCAAATTCCAAACTGGTGCTGAAAAGTGGGGGGGCCCTTTT
GCTCGGGGGATAGGGCTCAAATCAATGGCCTTTGTTGCTGGCCCAGGAAA
CTGCCAACCCCTTTTGAATACTGGTCCCCAAATCCCCCAACCCCCAACCC
CAAAAAAACTTGGGGGGGGCCCCAGGGGGGGGGATAGATTTCTTCCACCG
GGAAAGGGGCCCCTAAACACCCCCCAAAAAAAGGGGCCCAACCCAAAGGG
GGGGGGCGGGTTTTTATACTTTTTAAAAAAAAAAAAAAAATAAATTTTTT
TTTGGTTGTTTCCTCCCCCCCCCCCCCCCCTCTTCAGGAGGGGGGGGGTG
CCTCCTCCCCCACACACACCCCCCAC
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