EY675132

Overview
NameEY675132
Unique NameEY675132
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1026
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYA_AQUAE (Serine hydroxymethyltransferase OS=Aquifex aeolicus GN=glyA PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.627e-44
Identity = 111/243 (45.68%), Postives = 142/243 (58.44%), Query Frame = 2
Query:  110 DPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWGGPFARGIGLKSMAFVAG--PGNCQPLLNTGPQIPQPPTPKKLGGGPRGG 832
            DPE+ D + KE  RQ   +E+IASENFTS AV+EA GS LTNKY+EG+PG RYYGG E++D +ENL   RA + F  +      NVQP+SGS AN A Y AVL P D IMG+DL  GGHLTH      G K++ +  L   + Y VN  T  IDY++L + A + + KLI+ G SA PR +++AK +  A++ G  F     +  MA  AG   G   P      Q     T K L  GPR G
Sbjct:    8 DPEVFDAVVKEYERQFYNLEMIASENFTSLAVMEATGSVLTNKYAEGLPGKRYYGGCEYVDVVENLAIERAKKLFGAE----HANVQPHSGSQANMAVYFAVLNPGDTIMGMDLAHGGHLTH------GAKVNFSGKLYNVIHYGVNPETELIDYDQLYKLAKEHKPKLIVGGASAYPRVFDWAKMREIADEVGALF-----MVDMAHYAGLIAGGVYPNPVPYAQFVTSTTHKTL-RGPRSG 234          
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYA_PROM4 (Serine hydroxymethyltransferase OS=Prochlorococcus marinus (strain MIT 9211) GN=glyA PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 3.624e-44
Identity = 113/256 (44.14%), Postives = 150/256 (58.59%), Query Frame = 2
Query:   89 NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWGGPFARGIGLKSMAFVAGPGNCQPLLNTGPQIPQP--------PTPKKLGGGPRGG 832
            NS+LE  DP I  LI++E +RQ   +ELIASENFTS AV+EA GS LTNKY+EG+P  RYYGG E ID+IE L   RA Q F     +W  NVQP+SG+ ANF+ + ++LEP ++IMG+DL  GGHLTH      G  ++ +    +++ Y V+  T  ++   + E AL  R KLIICG SA PR  ++  F++ A++ G        L  MA +AG      L+ TG   P P         T  K   GPRGG
Sbjct:    5 NSALEDADPNIASLIQEESKRQENHLELIASENFTSKAVMEAQGSVLTNKYAEGLPNKRYYGGCEHIDKIEGLAIERAKQLF---KAEW-ANVQPHSGAQANFSVFLSLLEPGEKIMGMDLSHGGHLTH------GSPVNVSGKWFKAIHYGVDKETQRLEMENVREIALKNRPKLIICGYSAYPRNIDFLAFRSIADEVGAYL-----LADMAHIAG------LVATGIH-PSPIPHCDVVTTTTHKTLRGPRGG 238          
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYA_SYNY3 (Serine hydroxymethyltransferase OS=Synechocystis sp. (strain PCC 6803) GN=glyA PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 4.733e-44
Identity = 110/261 (42.15%), Postives = 150/261 (57.47%), Query Frame = 2
Query:   74 VNEWGNSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWGGPFARGIGLKSMAFVAGPGNCQPLLNTGPQIPQP--------PTPKKLGGGPRGG 832
            +N+     L T DP +  +I++E +RQ   IELIASENFTS AV+ A GS LTNKY+EG+PG RYYGG EF+D+ E L  SR  + F         NVQP+SG+ ANFA +  +L+P D IMG+DL  GGHLTH      G  ++ +    E   Y V   TG +DY+K+ ++AL+ + KL+ICG SA PR+ E+ KF+  A++ G        +  +A +AG      L+ +G   P P         T  K   GPRGG
Sbjct:    1 MNQTNLDFLATSDPALAAIIDRELQRQRTHIELIASENFTSAAVMAAQGSVLTNKYAEGLPGKRYYGGCEFVDQAETLAISRVKELFGAA----HANVQPHSGAQANFAVFLTLLQPGDTIMGMDLSHGGHLTH------GSPVNVSGKWFEVAHYGVEKETGRLDYDKIRQQALEVKPKLLICGYSAYPRQIEFDKFRAIADEVGAYL-----MADIAHIAG------LVASGHH-PSPLPYCDVVTTTTHKTLRGPRGG 239          
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYA_BACV8 (Serine hydroxymethyltransferase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=glyA PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 4.733e-44
Identity = 105/245 (42.86%), Postives = 142/245 (57.96%), Query Frame = 2
Query:  110 DPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWGG----PFARGIGLKSMAFVAGPGNCQPLLNTGPQIPQPPTPKKLGGGPRGG 832
            D  I D+IEKE +RQ +GIELIASENF S  V++A+GS LTNKY+EG PG RYYGG E +D+ E +   R  Q F     +W  NVQP+SG+ AN A + AVL P D+ MGL+L  GGHL+H      G  ++ + I+     Y +N  TG +DY+++EE AL  + K+II GGSA  REW+Y + +  A+K G       A   GL +   +  P     ++ +        T  K   GPRGG
Sbjct:    4 DDLIFDIIEKEHQRQLKGIELIASENFVSDQVMQAMGSCLTNKYAEGYPGKRYYGGCEVVDQSEQIAIDRLKQIF---GAEW-ANVQPHSGAQANAAVFLAVLNPGDKFMGLNLAHGGHLSH------GSLVNTSGIIYTPCEYNLNKETGRVDYDQMEEIALREKPKMIIGGGSAYSREWDYKRMREIADKVGAILMIDMAHPAGLIAAGLLDNPVKYAHIVTS--------TTHKTLRGPRGG 230          
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYA_BACTN (Serine hydroxymethyltransferase OS=Bacteroides thetaiotaomicron GN=glyA PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 6.182e-44
Identity = 104/245 (42.45%), Postives = 142/245 (57.96%), Query Frame = 2
Query:  110 DPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWGG----PFARGIGLKSMAFVAGPGNCQPLLNTGPQIPQPPTPKKLGGGPRGG 832
            D  I D+IEKE +RQ +GIELIASENF S  V++A+GS LTNKY+EG PG RYYGG E +D+ E +   R  + F     +W  NVQP+SG+ AN A + AVL P D+ MGL+L  GGHL+H      G  ++ + I+     Y +N  TG +DY+++EE AL  + K+II GGSA  REW+Y + +  A+K G       A   GL +   +  P     ++ +        T  K   GPRGG
Sbjct:    4 DDLIFDIIEKEHQRQLKGIELIASENFVSDQVMQAMGSCLTNKYAEGYPGKRYYGGCEVVDQSEQIAIDRLKEIF---GAEW-ANVQPHSGAQANAAVFLAVLNPGDKFMGLNLAHGGHLSH------GSLVNTSGIIYTPCEYNLNQETGRVDYDQMEEVALREKPKMIIGGGSAYSREWDYKRMREIADKVGAILMIDMAHPAGLIAAGLLENPVKYAHIVTS--------TTHKTLRGPRGG 230          
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYA_ACIC1 (Serine hydroxymethyltransferase OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=glyA PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 6.182e-44
Identity = 110/248 (44.35%), Postives = 140/248 (56.45%), Query Frame = 2
Query:   92 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWGGPFARGIGLKSMAFVAG--PGNCQPLLNTGPQIPQPPTPKKLGGGPRG 829
            ++L   DP I DLI  E+RRQ   I LI SEN+ S AV+EA G+ LTNKYSEG P  RYY G +FID+IE +   RA Q F +D      NVQPYSGSPAN A Y A+L P D +MG+ LP GGHLTHG+       +SAT I   S+ Y V   TG ID++++ E A   R K+I  GG+A PR  ++A F   A +        + +  +A ++G   G   P       I    T K L  GPRG
Sbjct:    9 AALTATDPTIADLIRAEERRQSEKIRLIPSENYVSKAVLEATGTVLTNKYSEGYPNRRYYEGQQFIDQIETIAIERAKQLFGVD----HANVQPYSGSPANLAIYLALLSPGDTVMGMALPMGGHLTHGW------PVSATGIWFRSVQYGVRRDTGRIDFDEVREVARRERPKVIFAGGTAIPRIIDFAAFAEIARE-----VNAVLVADIAHISGLVAGGVHPSPVGHADIISTTTHKTL-RGPRG 240          
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYA_THELT (Serine hydroxymethyltransferase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=glyA PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.377e-43
Identity = 104/249 (41.77%), Postives = 144/249 (57.83%), Query Frame = 2
Query:   98 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWGG----PFARGIGLKSMAFVAGPGNCQPLLNTGPQIPQPPTPKKLGGGPRGG 832
            L+  D E+HDL+  E +RQ  G+ELIASENF S AV+EA+GS LTNKY+EG P  RYYGG E++D+IE+L R RA Q F +       NVQP+SGS AN AAY ++ EP D +MG+ L  GGHLTH      G  ++ +  L + + Y VN  T  I+Y+++   AL ++ K+I+ GGSA  R  ++ KF+  A++ G       A   GL +      P     ++ +        T  K   GPRGG
Sbjct:    5 LKVTDSEVHDLLIGELKRQEYGLELIASENFASVAVMEAMGSILTNKYAEGYPAKRYYGGCEWVDKIEDLARERAKQLFKVK----YANVQPHSGSQANMAAYLSIAEPGDVLMGMSLSHGGHLTH------GASVNFSGKLFKVIQYGVNPETEMINYDEVRSMALQYKPKIIVAGGSAYSRIIDFKKFREIADEAGAYLVVDMAHFAGLVAAGLYPNPAEYAHIVTS--------TTHKTLRGPRGG 235          
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYA_CHLL2 (Serine hydroxymethyltransferase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=glyA PE=3 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 1.377e-43
Identity = 111/249 (44.58%), Postives = 141/249 (56.63%), Query Frame = 2
Query:   98 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWGGPFARGIGLKSMAFVAGPGNCQPLLNTGPQIPQ----PPTPKKLGGGPRGG 832
            L   D E+ + I  E  RQ   +ELIASENFTS AV++A GS +TNKY+EG PG RYYGG EF+D  ENL R RA + F        VNVQP+SGS AN A   +VL+P DRIMGLDL  GGHLTH      G  ++ +  L ++  Y V+  TG ID N++EE AL+ R KLIICG SA  + +++  F+  A+K        +G   MA +A P            +P       T  K   GPRGG
Sbjct:    6 LRMQDKEVFEAIAGETLRQTETLELIASENFTSRAVMQACGSLMTNKYAEGYPGKRYYGGCEFVDIAENLARDRAKKLFGCQ----YVNVQPHSGSSANMAVLFSVLKPGDRIMGLDLSHGGHLTH------GSPVNFSGQLFDAHSYGVDRETGCIDMNRVEELALEVRPKLIICGASAYSQGFDFKAFREIADK--------VGALLMADIAHPAGLIAAGLLSDPMPHCHFVTTTTHKTLRGPRGG 236          
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYA_THETN (Serine hydroxymethyltransferase OS=Thermoanaerobacter tengcongensis GN=glyA PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.799e-43
Identity = 107/247 (43.32%), Postives = 143/247 (57.89%), Query Frame = 2
Query:   98 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWGGPFARGIGLKSMAFVAG--PGNCQPLLNTGPQIPQPPTPKKLGGGPRGG 832
            +   DPEI ++I KE  RQ   IELIASENF S AV+EA+G+ LTNKY+EG PG RYYGG E++D  E L R R  + F  +      NVQP+SG+ AN AAY A+L+P D ++G+DL  GGHLTH      G K++ +  +   + Y V   TGYIDY+++E+ A   + KLI+ G SA PR  ++ KF+  A+K G        +  MA +AG       P       +    T K L  GPRGG
Sbjct:    6 IRKTDPEIAEVILKELNRQRNKIELIASENFVSRAVMEAMGTPLTNKYAEGYPGRRYYGGCEYVDMAEELARERLKKLFGAE----HANVQPHSGAQANMAAYFALLKPGDTVLGMDLAHGGHLTH------GSKVNFSGQIYNFVSYGVREDTGYIDYDQVEDLAKKHKPKLIVAGASAYPRIIDFKKFREIADKVGAYL-----MVDMAHIAGLVAAGLHPNPVPYADVVTTTTHKTL-RGPRGG 236          
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYA_SYNJB (Serine hydroxymethyltransferase OS=Synechococcus sp. GN=glyA PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.799e-43
Identity = 113/253 (44.66%), Postives = 146/253 (57.71%), Query Frame = 2
Query:   98 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWGGPFARGIGLKSMAFVAGPGNCQPLLNTGPQIPQP--------PTPKKLGGGPRGG 832
            L   DP ++ LI++E  RQ   +E+IASENFTS AV+ A GS LTNKY+EG+PG RYYGG EFIDEIE L   RA Q F         NVQP+SG+ ANFA + A+L+P D IMG+DL  GGHLTH      G  ++ +      + Y V+  T  ID++++ + AL  R KLIICG SA PR  ++A F+T A++ G        L  +A +AG      L+ TG   P P         T  K   GPRGG
Sbjct:    4 LAETDPVVYRLIQQELNRQRDHLEMIASENFTSPAVLAAQGSVLTNKYAEGLPGKRYYGGCEFIDEIEQLAIDRAKQLFGAA----HANVQPHSGAQANFAVFLALLQPGDTIMGMDLSHGGHLTH------GSPVNVSGKWFRVVHYGVHPQTERIDFDQVRDLALQHRPKLIICGYSAYPRAIDFAAFRTIADEVGAYL-----LADIAHIAG------LVATGHH-PNPVPLCDVVTTTTHKTLRGPRGG 234          
The following BLAST results are available for this feature:
BLAST of EY675132 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_AQUAE1.627e-4445.68Serine hydroxymethyltransferase OS=Aquifex aeolicu... [more]
GLYA_PROM43.624e-4444.14Serine hydroxymethyltransferase OS=Prochlorococcus... [more]
GLYA_SYNY34.733e-4442.15Serine hydroxymethyltransferase OS=Synechocystis s... [more]
GLYA_BACV84.733e-4442.86Serine hydroxymethyltransferase OS=Bacteroides vul... [more]
GLYA_BACTN6.182e-4442.45Serine hydroxymethyltransferase OS=Bacteroides the... [more]
GLYA_ACIC16.182e-4444.35Serine hydroxymethyltransferase OS=Acidothermus ce... [more]
GLYA_THELT1.377e-4341.77Serine hydroxymethyltransferase OS=Thermotoga lett... [more]
GLYA_CHLL21.377e-4344.58Serine hydroxymethyltransferase OS=Chlorobium limi... [more]
GLYA_THETN1.799e-4343.32Serine hydroxymethyltransferase OS=Thermoanaerobac... [more]
GLYA_SYNJB1.799e-4344.66Serine hydroxymethyltransferase OS=Synechococcus s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-006-E06-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675132 ID=EY675132; Name=EY675132; organism=Citrus sinensis; type=EST; length=1026bp
CACGCGTCCGCATTTTCCCTTTTTTTCCTTTTCAGTGAATCCAGAAAACG
GAAAAAAAGAAAAAATGGATCCAGTGAACGAGTGGGGCAACTCATCTCTT
GAAACCGTGGACCCAGAAATTCACGACCTGATCGAGAAAGAGAAGCGCCG
ACAATGCCGCGGCATCGAGCTCATCGCCTCCGAGAACTTCACCTCCTTCG
CCGTTATCGAAGCCCTCGGCAGCGCCCTCACCAACAAATACTCAGAGGGA
ATGCCCGGCAACCGTTACTACGGAGGCAACGAATTCATCGACGAGATCGA
GAATCTCTGCCGGTCGAGAGCTTTACAAACTTTCCATTTGGACCCCACCC
AGTGGGGTGTCAACGTTCAGCCTTACTCCGGCTCGCCGGCCAACTTCGCC
GCTTACACGGCGGTGCTCGAGCCTCATGACCGTATCATGGGGCTGGACTT
GCCGTCCGGAGGGCATTTGACTCATGGGTATTACACTTCTGGCGGGAAAA
AGATATCGGCGACTTCGATTTTACTCGAGAGCTTGCCGTACAAGGTGAAT
TCGAGTACTGGGTATATTGATTACAATAAGTTGGAGGAGAAAGCGTTGGA
TTTTAGGGCGAAGTTGATCATTTGCGGGGGGAGTGCGTAACCAAGGGAAT
GGGAATATGCCAAATTCCAAACTGGTGCTGAAAAGTGGGGGGGCCCTTTT
GCTCGGGGGATAGGGCTCAAATCAATGGCCTTTGTTGCTGGCCCAGGAAA
CTGCCAACCCCTTTTGAATACTGGTCCCCAAATCCCCCAACCCCCAACCC
CAAAAAAACTTGGGGGGGGCCCCAGGGGGGGGGATAGATTTCTTCCACCG
GGAAAGGGGCCCCTAAACACCCCCCAAAAAAAGGGGCCCAACCCAAAGGG
GGGGGGCGGGTTTTTATACTTTTTAAAAAAAAAAAAAAAATAAATTTTTT
TTTGGTTGTTTCCTCCCCCCCCCCCCCCCCTCTTCAGGAGGGGGGGGGTG
CCTCCTCCCCCACACACACCCCCCAC
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