EY675132

Overview
NameEY675132
Unique NameEY675132
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1026
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYA1_PHOPR (Serine hydroxymethyltransferase 1 OS=Photobacterium profundum GN=glyA1 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.516e-37
Identity = 103/242 (42.56%), Postives = 134/242 (55.37%), Query Frame = 2
Query:  110 DPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWGGPFARGIGLKSMAFVAGPGNCQPLLNTGPQI-PQPPTPKKLGGGPRGG 832
            D E+   I++E  RQ   IELIASEN+TS  V+EA GS LTNKY+EG PG RYYGG EF+D+ E L   RA Q F  +      NVQP+SGS AN A Y A+L P D ++G+ L  GGHLTH      G  ++ +  L   +PY ++  TG IDY ++E  AL+ + K+II G SA  +  ++ + +  A+K G  F        MA VAG        N  P       T  K   GPRGG
Sbjct:   12 DAELFAAIQEETARQEEHIELIASENYTSPRVMEAQGSQLTNKYAEGYPGKRYYGGCEFVDKAEQLAIDRACQLFGAE----YANVQPHSGSQANNAVYMALLNPGDTVLGMSLAHGGHLTH------GSPVNFSGKLYNIIPYGID-ETGQIDYEEMEALALEHKPKMIIGGFSAYSQVVDWKRMREIADKVGAYF-----FVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAGPRGG 237          
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYA_RHOPB (Serine hydroxymethyltransferase OS=Rhodopseudomonas palustris (strain BisB18) GN=glyA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 3.285e-37
Identity = 102/248 (41.13%), Postives = 136/248 (54.84%), Query Frame = 2
Query:   89 NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWGGPFARGIGLKSMAFVAGPGNCQPLLNTGPQIPQPPTPKKLGGGPRGG 832
            ++++   DPEI   I  E  RQ   IELIASEN  S AV+EA GS +TNKY+EG PG+RYYGG EF+D  ENL   RA + F         NVQP SGS  N A + A+L+P D  MGLDL +GGHLTH      G  ++ +    + + Y V    G ID +++ + A   + KLII GGSA  R W++ +F+  A+  G  F   +       VAG  +  P+ +    +    T K L  GPRGG
Sbjct:   23 SATIADADPEIAAAIAGELGRQRHEIELIASENIVSRAVMEAQGSVMTNKYAEGYPGHRYYGGCEFVDVAENLAIERAKKLFGAG----FANVQPNSGSQMNQAVFLALLQPGDTFMGLDLAAGGHLTH------GSSVNMSGKWFKPVHYGVRREDGIIDMDEVAKIAEANKPKLIIAGGSAYSRAWDFKRFREIADSVGAYFMVDMA-HFAGLVAGGVHANPVPHA--HVVTTTTHKSL-RGPRGG 256          
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYA_OPITP (Serine hydroxymethyltransferase OS=Opitutus terrae (strain DSM 11246 / PB90-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 3.285e-37
Identity = 104/255 (40.78%), Postives = 138/255 (54.12%), Query Frame = 2
Query:   92 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWGGPFARGIGLKSMAFVAGPGNCQPLLNTGPQIPQP--------PTPKKLGGGPRGG 832
            S L+T+DP++   I +E  RQ   IELIASENFT  AV+EA GS LTNKY+EG P  R+YGG EF+D++E L   RA + F  +      NVQP+SG+ AN A Y AVL+P D+++G++L  GGHLTHG   +   K      L +   Y V    G IDY++L   A   + K+I  G SA  R  ++A+         G  ARG+G    A +A   +   L+  G   P P         T  K   GPRGG
Sbjct:    5 SPLQTLDPQVFSAISEELARQQSHIELIASENFTYPAVMEAQGSVLTNKYAEGYPAKRWYGGCEFVDKVEVLAIERAKKLFGAE----HANVQPHSGAQANTAVYAAVLQPGDKVLGMNLSHGGHLTHGNPANFSGK------LYQFCQYGVREDNGLIDYDELAATADREKPKMITVGASAYSRIIDFARM--------GEIARGVGAYLFADIA---HIAGLVAAGAH-PSPVPHADFVSTTTHKTLRGPRGG 237          
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYA_HYDS0 (Serine hydroxymethyltransferase OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=glyA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 3.285e-37
Identity = 102/253 (40.32%), Postives = 136/253 (53.75%), Query Frame = 2
Query:   98 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWGGPFARGIGLKSMAFVAGPGNCQPLLNTGPQIPQP--------PTPKKLGGGPRGG 832
            L+  D E++D I  E  RQ   +E+IASENFTS  ++EA GS LTNKY+EG+P  RYYGG E++D +E+L   RA + F  +      NVQP+SGS AN A Y AVL+P D I+G+ L  GGHLTHG   +   KI        ++ Y V  S   IDY+++ + A + + K+II G SA PR  ++AK +  A+  G        +  MA  AG       L  G   P P         T  K   GPR G
Sbjct:    3 LKAKDKEVYDAIASELNRQNSYLEMIASENFTSLEIMEAQGSVLTNKYAEGLPHKRYYGGCEYVDIVEDLAIQRAKELFKAE----HANVQPHSGSQANMAVYMAVLKPGDTILGMSLAHGGHLTHGATVNFSGKI------YNAVYYGVRESDYLIDYDQMYKLAKEHKPKMIIGGASAYPRVIDWAKMREIADSVGAYL-----MVDMAHYAG-------LIAGGVYPSPVEVSHFVTSTTHKTLRGPRSG 233          
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYA_ELUMP (Serine hydroxymethyltransferase OS=Elusimicrobium minutum (strain Pei191) GN=glyA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 3.285e-37
Identity = 97/251 (38.65%), Postives = 136/251 (54.18%), Query Frame = 2
Query:   92 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWGG----PFARGIGLKSMAFVAGPGNCQPLLNTGPQIPQPPTPKKLGGGPRGG 832
            S+L+  D  + D +EKE  RQ   +ELIASENFTS +V+EA GS LTNKY+EG PG RYYGG EF+D +E L   RA Q F  +      NVQP+SG+ AN AAY A++ P D ++GL+L  GGHLTHG+       ++ +    + +P  V      IDY +  + AL+ + K+I+ G S   R +++ K +  A+          A   GL +    + P     ++ T        T  K   GPRGG
Sbjct:    3 SNLQKTDKAVFDAVEKELGRQRTKLELIASENFTSLSVMEAQGSILTNKYAEGYPGKRYYGGCEFVDMVETLAIERAKQIFGAE----HANVQPHSGAQANMAAYLALINPGDTVLGLNLSHGGHLTHGH------PMNFSGKYFKIVPMNVRKEDEQIDYEEAAKLALEHKPKVIMAGASNYSRIFDWKKLREIADSVDAYLICDVAHYAGLIAAGVYSNPVPYADIVTT--------TTHKTLRGPRGG 235          
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYA_CITK8 (Serine hydroxymethyltransferase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=glyA PE=3 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 3.285e-37
Identity = 102/242 (42.15%), Postives = 135/242 (55.79%), Query Frame = 2
Query:  110 DPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWGGPFARGIGLKSMAFVAGPGNCQPLLNTGPQI-PQPPTPKKLGGGPRGG 832
            D E+   +E+EK RQ   IELIASEN+TS  V++A GS LTNKY+EG PG RYYGG E++D +E L   RA + F  D      NVQP+SGS ANFA YTA+L+P D ++G++L  GGHLTH      G  ++ +  L   +PY ++ S G IDY ++ + A   + K+II G SA     ++AK +  A+  G           MA VAG        N  P       T  K   GPRGG
Sbjct:   12 DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAD----YANVQPHSGSQANFAVYTALLQPGDTVLGMNLAQGGHLTH------GSPVNFSGKLYNIVPYGIDES-GKIDYEEMAKLAQTHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYL-----FVDMAHVAGLIAADVYPNPVPHAHVVTTTTHKTLAGPRGG 237          
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYA_BRASB (Serine hydroxymethyltransferase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=glyA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 3.285e-37
Identity = 105/257 (40.86%), Postives = 141/257 (54.86%), Query Frame = 2
Query:   74 VNEWGNSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWGG----PFARGIGLKSMAFVAGPGNCQPLLNTGPQIPQPPTPKKLGGGPRGG 832
            V+ + +++L   DPEI   I+ E  RQ   IELIASEN  S AV+EA GS +TNKY+EG PG RYYGG E++D  ENL   RA + F  +      NVQP SGS  N A + A+L+P D  MGLDL +GGHLTH      G  ++ +    ++  Y V      ID + + ++A + + KLII GGSA  R W++ +F+  A+  G       A   GL     VAG  +  P+ +    I    T K L  GPRGG
Sbjct:   12 VDSFFSATLAEADPEIAAAIKGELGRQRHEIELIASENIVSRAVLEAQGSVMTNKYAEGYPGARYYGGCEWVDVAENLAIDRAKKLFGAN----FANVQPNSGSQMNQAVFLALLQPGDTFMGLDLAAGGHLTH------GSPVNMSGKWFKAAHYTVRRDDHLIDMDAVAKQAEEVKPKLIIAGGSAYSRPWDFKRFREIADHVGAYLLVDMAHFAGL-----VAGGAHASPVPHA--HIVTTTTHKSL-RGPRGG 250          
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYA_BORHD (Serine hydroxymethyltransferase OS=Borrelia hermsii (strain DAH) GN=glyA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 3.285e-37
Identity = 99/246 (40.24%), Postives = 138/246 (56.10%), Query Frame = 2
Query:  107 VDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWGG----PFARGIGLKSMAFVAGPGNCQPLLNTGPQIPQPPTPKKLGGGPRGG 832
            +D  + DLIE+E +R+   IELIASENF S  V  A+GS LTNKY+EG P  RYYGG   +D+IE+L  SRA + F  +      NVQP+SGS AN AA  A+++P DRI+G++L  GGHLTH      G K+S + +  ++  Y V+  +  IDY+ + + A + R  LII G S+  RE ++ KF+  A++         A   GL +  F   P +   L  +        T  K   GPRGG
Sbjct:    2 IDSILFDLIEREVKREKENIELIASENFVSSDVRRAVGSILTNKYAEGYPSKRYYGGCFVVDDIESLAISRARELFGAN----YANVQPHSGSQANMAAIMALIKPGDRILGMELSHGGHLTH------GSKVSFSGMFFDAYSYGVSRESEMIDYDDVRKIAKECRPNLIIAGASSYSREIDFKKFREIADEVSAYLLCDVAHTAGLIATGFHNSPIDVAHLTTS--------TTHKTLRGPRGG 229          
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYA2_PSEPK (Serine hydroxymethyltransferase 2 OS=Pseudomonas putida (strain KT2440) GN=glyA2 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 3.285e-37
Identity = 97/245 (39.59%), Postives = 139/245 (56.73%), Query Frame = 2
Query:  110 DPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWGG----PFARGIGLKSMAFVAGPGNCQPLLNTGPQIPQPPTPKKLGGGPRGG 832
            D E+ + +++E  RQ   IELIASEN+TS AV+EA GS LTNKY+EG PG RYYGG E++D +E L   RA + F  D      NVQP++GS AN A Y A+L   D I+G+ L  GGHLTH      G  +S++  L  ++ Y ++ + G IDY+++E  A++ + K+I+ G SA  +  ++A+F+  A+K G       A   GL +      P     ++ T        T  K   GPRGG
Sbjct:   12 DAELFEAMQQEALRQEEHIELIASENYTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAD----YANVQPHAGSQANAAVYLALLSAGDTILGMSLAHGGHLTH------GASVSSSGKLYNAIQYGIDGN-GLIDYDEVERLAVEHKPKMIVAGFSAYSQVLDFARFRAIADKVGAYLFVDMAHVAGLVAAGVYPNPVPFADVVTT--------TTHKTLRGPRGG 237          
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYA2_PSEF5 (Serine hydroxymethyltransferase 2 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=glyA2 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 3.285e-37
Identity = 97/249 (38.96%), Postives = 139/249 (55.82%), Query Frame = 2
Query:   98 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWGG----PFARGIGLKSMAFVAGPGNCQPLLNTGPQIPQPPTPKKLGGGPRGG 832
            ++  D  +   I  E++RQ   IELIASEN+TS  V++A GS LTNKY+EG PG RYYGG E +D++E L   RA Q F  D      NVQP+SGS AN   Y A+L+  D I+G+ L  GGHLTH      G K+S++  L  ++ Y +++ TG IDY+++E  A++ + K+I+ G SA  +  ++ +F+  A+K G       A   GL +      P     ++ T        T  K   GPRGG
Sbjct:    8 IQGYDDALLAAINAEEQRQEDHIELIASENYTSKRVMQAQGSGLTNKYAEGYPGKRYYGGCEHVDKVEALAIERAKQLFGAD----YANVQPHSGSSANSEVYLALLQAGDTILGMSLAHGGHLTH------GAKVSSSGKLYNAVQYGIDTRTGLIDYDEVERLAVEHKPKMIVAGFSAYSKTLDFPRFRQIADKVGALLFVDMAHVAGLVAAGLYPNPLPYADVVTT--------TTHKTLRGPRGG 238          
The following BLAST results are available for this feature:
BLAST of EY675132 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA1_PHOPR2.516e-3742.56Serine hydroxymethyltransferase 1 OS=Photobacteriu... [more]
GLYA_RHOPB3.285e-3741.13Serine hydroxymethyltransferase OS=Rhodopseudomona... [more]
GLYA_OPITP3.285e-3740.78Serine hydroxymethyltransferase OS=Opitutus terrae... [more]
GLYA_HYDS03.285e-3740.32Serine hydroxymethyltransferase OS=Hydrogenobaculu... [more]
GLYA_ELUMP3.285e-3738.65Serine hydroxymethyltransferase OS=Elusimicrobium ... [more]
GLYA_CITK83.285e-3742.15Serine hydroxymethyltransferase OS=Citrobacter kos... [more]
GLYA_BRASB3.285e-3740.86Serine hydroxymethyltransferase OS=Bradyrhizobium ... [more]
GLYA_BORHD3.285e-3740.24Serine hydroxymethyltransferase OS=Borrelia hermsi... [more]
GLYA2_PSEPK3.285e-3739.59Serine hydroxymethyltransferase 2 OS=Pseudomonas p... [more]
GLYA2_PSEF53.285e-3738.96Serine hydroxymethyltransferase 2 OS=Pseudomonas f... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-006-E06-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675132 ID=EY675132; Name=EY675132; organism=Citrus sinensis; type=EST; length=1026bp
CACGCGTCCGCATTTTCCCTTTTTTTCCTTTTCAGTGAATCCAGAAAACG
GAAAAAAAGAAAAAATGGATCCAGTGAACGAGTGGGGCAACTCATCTCTT
GAAACCGTGGACCCAGAAATTCACGACCTGATCGAGAAAGAGAAGCGCCG
ACAATGCCGCGGCATCGAGCTCATCGCCTCCGAGAACTTCACCTCCTTCG
CCGTTATCGAAGCCCTCGGCAGCGCCCTCACCAACAAATACTCAGAGGGA
ATGCCCGGCAACCGTTACTACGGAGGCAACGAATTCATCGACGAGATCGA
GAATCTCTGCCGGTCGAGAGCTTTACAAACTTTCCATTTGGACCCCACCC
AGTGGGGTGTCAACGTTCAGCCTTACTCCGGCTCGCCGGCCAACTTCGCC
GCTTACACGGCGGTGCTCGAGCCTCATGACCGTATCATGGGGCTGGACTT
GCCGTCCGGAGGGCATTTGACTCATGGGTATTACACTTCTGGCGGGAAAA
AGATATCGGCGACTTCGATTTTACTCGAGAGCTTGCCGTACAAGGTGAAT
TCGAGTACTGGGTATATTGATTACAATAAGTTGGAGGAGAAAGCGTTGGA
TTTTAGGGCGAAGTTGATCATTTGCGGGGGGAGTGCGTAACCAAGGGAAT
GGGAATATGCCAAATTCCAAACTGGTGCTGAAAAGTGGGGGGGCCCTTTT
GCTCGGGGGATAGGGCTCAAATCAATGGCCTTTGTTGCTGGCCCAGGAAA
CTGCCAACCCCTTTTGAATACTGGTCCCCAAATCCCCCAACCCCCAACCC
CAAAAAAACTTGGGGGGGGCCCCAGGGGGGGGGATAGATTTCTTCCACCG
GGAAAGGGGCCCCTAAACACCCCCCAAAAAAAGGGGCCCAACCCAAAGGG
GGGGGGCGGGTTTTTATACTTTTTAAAAAAAAAAAAAAAATAAATTTTTT
TTTGGTTGTTTCCTCCCCCCCCCCCCCCCCTCTTCAGGAGGGGGGGGGTG
CCTCCTCCCCCACACACACCCCCCAC
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