EY675117

Overview
NameEY675117
Unique NameEY675117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length983
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675117 vs. ExPASy Swiss-Prot
Match: GLYA_THEM4 (Serine hydroxymethyltransferase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=glyA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.462e-34
Identity = 78/132 (59.09%), Postives = 93/132 (70.45%), Query Frame = 3
Query:   84 WGNSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            W N  ++ VDPEI+++I KE  RQ  G+ELIASENF S AVIEA+GS LTNKY+EG PG RYYGG E++D  E L R RA + F++       NVQP+SGS AN  AY AV EP D IMG+ L  GGHLTHG
Sbjct:    2 WEN--VKKVDPEIYEVILKEWDRQEYGLELIASENFASLAVIEAMGSVLTNKYAEGYPGRRYYGGCEWVDVAEKLARDRAKELFNVK----YANVQPHSGSQANMGAYFAVSEPGDTIMGMSLSHGGHLTHG 127          
BLAST of EY675117 vs. ExPASy Swiss-Prot
Match: GLYA_ACIBL (Serine hydroxymethyltransferase OS=Acidobacteria bacterium (strain Ellin345) GN=glyA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.462e-34
Identity = 76/141 (53.90%), Postives = 95/141 (67.38%), Query Frame = 3
Query:   90 NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGY-YTSGGKRYR 509
            + SL   DP+I + I  E+RRQ  G+ELIASENF S AV++A GS  TNKY+EG PG RYYGG E+ D +ENL R RA + F  +      NVQP+SGS AN  AY A+L+P D I+GL+L  GGHLTHG+     GK Y+
Sbjct:    6 SQSLNEEDPQIAEAIANEERRQHEGLELIASENFVSEAVLQAAGSVFTNKYAEGYPGKRYYGGCEYADVVENLARDRAKELFGAE----HANVQPHSGSSANMEAYGAILQPGDTILGLNLAHGGHLTHGHPLNFSGKTYK 142          
BLAST of EY675117 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBH (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=glyA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 3.215e-34
Identity = 75/144 (52.08%), Postives = 100/144 (69.44%), Query Frame = 3
Query:   93 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTS-GGKRYRRLQF 521
            ++L+  DPE+ D+I+KE+ RQ   IELIASENFTS +V+E++GS LTNKY+EG P  RYYGG EF+DE+E+L R R  + F  +      NVQP+SGS AN A Y +VL+  D I+G+DL  GGHLTHG   +  GK Y  + +
Sbjct:    4 TNLKNTDPELLDMIKKEEERQEYNIELIASENFTSLSVMESMGSLLTNKYAEGYPHKRYYGGCEFVDEVEDLARERLKKLFAAE----HANVQPHSGSQANMAVYMSVLQTGDTILGMDLSHGGHLTHGSPVNFSGKLYNFISY 143          
BLAST of EY675117 vs. ExPASy Swiss-Prot
Match: GLYA_CLOB1 (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=glyA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 3.215e-34
Identity = 75/144 (52.08%), Postives = 100/144 (69.44%), Query Frame = 3
Query:   93 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTS-GGKRYRRLQF 521
            ++L+  DPE+ D+I+KE+ RQ   IELIASENFTS +V+E++GS LTNKY+EG P  RYYGG EF+DE+E+L R R  + F  +      NVQP+SGS AN A Y +VL+  D I+G+DL  GGHLTHG   +  GK Y  + +
Sbjct:    4 TNLKNTDPELLDMIKKEEERQEYNIELIASENFTSLSVMESMGSLLTNKYAEGYPHKRYYGGCEFVDEVEDLARERLKKLFAAE----HANVQPHSGSQANMAVYMSVLQTGDTILGMDLSHGGHLTHGSPVNFSGKLYNFISY 143          
BLAST of EY675117 vs. ExPASy Swiss-Prot
Match: GLYA_ACIC5 (Serine hydroxymethyltransferase OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=glyA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 3.215e-34
Identity = 77/139 (55.40%), Postives = 94/139 (67.63%), Query Frame = 3
Query:   96 SLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTS-GGKRYR 509
            SL   DP++   I+ E  RQ  G+E+IASENF S AV+EA GS  TNKY+EG PG RYYGG EF D +ENL R RA Q F  +      NVQP+SGS AN AAY ++++P D I+GLDL  GGHLTHG+  +  GK YR
Sbjct:    8 SLAQSDPDVAAAIDHEVLRQHEGLEMIASENFVSRAVLEAAGSVFTNKYAEGYPGRRYYGGCEFADVVENLARDRAKQLFGAE----HANVQPHSGSQANAAAYMSIIQPGDTILGLDLAHGGHLTHGHKLNFSGKLYR 142          
BLAST of EY675117 vs. ExPASy Swiss-Prot
Match: GLYA2_RHILO (Serine hydroxymethyltransferase 2 OS=Rhizobium loti GN=glyA2 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 3.215e-34
Identity = 74/147 (50.34%), Postives = 98/147 (66.67%), Query Frame = 3
Query:   84 WGNSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTS-GGKRYRRLQF 521
            +G SSL  VD  +H+L+ +++R++   ++LIASENF S AV+EA GS   NKY+EG PG RYY GNE +DE+E L   R    F  +      NVQPYSGSPAN A Y A+L P D++MGL LP GGHLTHG+  +  G  Y+R+ +
Sbjct:    7 YGRSSLVQVDCRVHELLLRQRRQERTMLKLIASENFASSAVLEATGSIFANKYAEGYPGARYYAGNEIVDELETLAIERLKALFGSE----HANVQPYSGSPANQAVYRALLSPRDKVMGLPLPEGGHLTHGWSVNFSGTDYQRVPY 149          
BLAST of EY675117 vs. ExPASy Swiss-Prot
Match: GLYA_CAMJR (Serine hydroxymethyltransferase OS=Campylobacter jejuni (strain RM1221) GN=glyA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 4.199e-34
Identity = 77/138 (55.80%), Postives = 91/138 (65.94%), Query Frame = 3
Query:   96 SLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG-YYTSGGKRY 506
            SLE  D EI DL  KE  RQC G+E+IASENFT   V+E +GS LTNKY+EG PG RYYGG EF+DEIE L   R  + F+        NVQP SGS AN   Y A++ P D+I+G+DL  GGHLTHG   +S GK Y
Sbjct:    2 SLEMFDKEIFDLTNKELERQCEGLEMIASENFTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCK----FANVQPNSGSQANQGVYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMY 135          
BLAST of EY675117 vs. ExPASy Swiss-Prot
Match: GLYA_CAMJJ (Serine hydroxymethyltransferase OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=glyA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 4.199e-34
Identity = 77/138 (55.80%), Postives = 91/138 (65.94%), Query Frame = 3
Query:   96 SLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG-YYTSGGKRY 506
            SLE  D EI DL  KE  RQC G+E+IASENFT   V+E +GS LTNKY+EG PG RYYGG EF+DEIE L   R  + F+        NVQP SGS AN   Y A++ P D+I+G+DL  GGHLTHG   +S GK Y
Sbjct:    2 SLEMFDKEIFDLTNKELERQCEGLEMIASENFTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIQRCKKLFNCK----FANVQPNSGSQANQGVYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMY 135          
BLAST of EY675117 vs. ExPASy Swiss-Prot
Match: GLYA_CAMJE (Serine hydroxymethyltransferase OS=Campylobacter jejuni GN=glyA PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 4.199e-34
Identity = 77/138 (55.80%), Postives = 91/138 (65.94%), Query Frame = 3
Query:   96 SLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG-YYTSGGKRY 506
            SLE  D EI DL  KE  RQC G+E+IASENFT   V+E +GS LTNKY+EG PG RYYGG EF+DEIE L   R  + F+        NVQP SGS AN   Y A++ P D+I+G+DL  GGHLTHG   +S GK Y
Sbjct:    2 SLEMFDKEIFDLTNKELERQCEGLEMIASENFTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCK----FANVQPNSGSQANQGVYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMY 135          
BLAST of EY675117 vs. ExPASy Swiss-Prot
Match: GLYA_CAMJD (Serine hydroxymethyltransferase OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=glyA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 4.199e-34
Identity = 77/138 (55.80%), Postives = 91/138 (65.94%), Query Frame = 3
Query:   96 SLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG-YYTSGGKRY 506
            SLE  D EI DL  KE  RQC G+E+IASENFT   V+E +GS LTNKY+EG PG RYYGG EF+DEIE L   R  + F+        NVQP SGS AN   Y A++ P D+I+G+DL  GGHLTHG   +S GK Y
Sbjct:    2 SLEMFDKEIFDLTNKELERQCEGLEMIASENFTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCK----FANVQPNSGSQANQGVYAALINPGDKILGMDLTHGGHLTHGAKVSSSGKMY 135          
The following BLAST results are available for this feature:
BLAST of EY675117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_THEM42.462e-3459.09Serine hydroxymethyltransferase OS=Thermosipho mel... [more]
GLYA_ACIBL2.462e-3453.90Serine hydroxymethyltransferase OS=Acidobacteria b... [more]
GLYA_CLOBH3.215e-3452.08Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_CLOB13.215e-3452.08Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_ACIC53.215e-3455.40Serine hydroxymethyltransferase OS=Acidobacterium ... [more]
GLYA2_RHILO3.215e-3450.34Serine hydroxymethyltransferase 2 OS=Rhizobium lot... [more]
GLYA_CAMJR4.199e-3455.80Serine hydroxymethyltransferase OS=Campylobacter j... [more]
GLYA_CAMJJ4.199e-3455.80Serine hydroxymethyltransferase OS=Campylobacter j... [more]
GLYA_CAMJE4.199e-3455.80Serine hydroxymethyltransferase OS=Campylobacter j... [more]
GLYA_CAMJD4.199e-3455.80Serine hydroxymethyltransferase OS=Campylobacter j... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-006-C11-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675117 ID=EY675117; Name=EY675117; organism=Citrus sinensis; type=EST; length=983bp
CCACGCGTCCGCATTTTCCCTTTTTTTCGTTTTCAGTGAATCCAGAAAAC
GGAAAAAAAGAAAAAATGGATCCAGTGAACGAGTGGGGCAACTCATCTCT
TGAAACCGTGGACCCAGAAATTCACGACCTGATCGAGAAAGAGAAGCGCC
GACAATGCCGCGGCATCGAGCTCATCGCCTCCGAGAACTTCACCTCCTTC
GCCGTTATCGAAGCCCTCGGCAGCGCCCTCACCAACAAATACTCAGAGGG
AATGCCCGGCAACCGTTACTACGGAGGCAACGAATTCATCGACGAGATCG
AGAATCTCTGCCGGTCGAGAGCTTTACAAACTTTCCATTTGGACCCCACC
CAGTGGGGTGTCAACGTTCAGCCTTACTCCGGCTCGCCGGCCAACTTCGC
CGCTTACACGGCGGTGCTCGAGCCTCATGACCGTATCATGGGGCTGGACT
TGCCGTCCGGAGGGCATTTGACTCATGGGTATTACACTTCCGGCGGGAAA
AGATATCGGCGACTTCAATTTACTTTCAAGAGCTTGGCCCGTACAAGGGT
GAAATTTCGAATACTGGGGTAAATTGGATTACGAAAAATTGGAGGAAAAG
GGGTTGGATTTTAGGGCCAAAGTTAATCATTTGCGGGGGGGGAATGGGTA
ACCGAAGGGGACTGGGGAATTATGGCAAATTTCAAAACTGGGTAGAGAAA
AATTGGGGGGGCCCTTTTGCCCCTGGGGTAAGGCGCGCAAATACTGGGGC
CTGGGTGGGCGCAAGGGGACGCTGCGGAGCCCCTTTAAAAAGAGGGGACC
AAGTAGCCCCACAAACAAAATGAAAAAGAACAGGGAGGGGGTGCAAAAGG
GGGGAGGGGATAGAGTCTTGTATAACAAAAAAGAGAGAGCAACAACGCAC
GACAGAGGAGGGGGGGAGAGACGCGAAAGGGGGGAGGAGTGTGTGTGTGT
AATGGTATGAAGAGGAAGGAGGAGTTAACGGAA
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