EY675056

Overview
NameEY675056
Unique NameEY675056
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length992
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS3_FLAPR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Flaveria pringlei GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.864e-22
Identity = 45/70 (64.29%), Postives = 58/70 (82.86%), Query Frame = 2
Query:  431 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISF 640
            L+ G+VYRE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGF+    V+ ISF
Sbjct:   96 LEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISF 165          
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS3_AMAHP (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.864e-22
Identity = 46/76 (60.53%), Postives = 57/76 (75.00%), Query Frame = 2
Query:  431 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISFPCWPAP 658
            L+  +VYRE+H SPGY DGRYWTMWKLPMYGCTD  QVL EV E +K YP +F+RIIGF+ +  V+ +SF  +  P
Sbjct:  103 LEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIAFKPP 178          

HSP 2 Score: 72.7886 bits (177), Expect = 3.509e-12
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 3
Query:   27 CYMVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 152
            C  VWPP G KKFETLSYLPPLSD  LL ++ YLL +GWIPC
Sbjct:   57 CMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNNGWIPC 98          
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS2_FLAPR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Flaveria pringlei GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.864e-22
Identity = 45/70 (64.29%), Postives = 58/70 (82.86%), Query Frame = 2
Query:  431 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISF 640
            L+ G+VYRE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGF+    V+ ISF
Sbjct:  101 LEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISF 170          
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS1_FLAPR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Flaveria pringlei GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.864e-22
Identity = 45/70 (64.29%), Postives = 58/70 (82.86%), Query Frame = 2
Query:  431 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISF 640
            L+ G+VYRE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGF+    V+ ISF
Sbjct:   96 LEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISF 165          
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS_HELAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 6.380e-22
Identity = 44/70 (62.86%), Postives = 57/70 (81.43%), Query Frame = 2
Query:  431 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISF 640
            L+ G+VYRE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGF+    V+ I F
Sbjct:  101 LEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELAECKKEYPQAWIRIIGFDNVRQVQCIMF 170          

HSP 2 Score: 70.0922 bits (170), Expect = 2.274e-11
Identity = 28/42 (66.67%), Postives = 33/42 (78.57%), Query Frame = 3
Query:   27 CYMVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 152
            C  VWPP GLKK+ETLSYLPPL++  L KE+ YLLR  W+PC
Sbjct:   55 CMKVWPPLGLKKYETLSYLPPLTETQLAKEVDYLLRKKWVPC 96          
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS1_AMAHP (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 6.380e-22
Identity = 45/70 (64.29%), Postives = 55/70 (78.57%), Query Frame = 2
Query:  431 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISF 640
            L+  +VYRE+H SPGY DGRYWTMWKLPMYGCTD  QVL EV E +K YP +F+RIIGF+ +  V+ +SF
Sbjct:  105 LEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSF 174          

HSP 2 Score: 72.4034 bits (176), Expect = 4.582e-12
Identity = 30/42 (71.43%), Postives = 32/42 (76.19%), Query Frame = 3
Query:   27 CYMVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 152
            C  VWPP G KKFETLSYLPPLSD  LL ++ YLL  GWIPC
Sbjct:   59 CMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPC 100          
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS2_AMAHP (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 8.332e-22
Identity = 45/70 (64.29%), Postives = 55/70 (78.57%), Query Frame = 2
Query:  431 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISF 640
            L+  +VYRE+H SPGY DGRYWTMWKLPMYGCTD  QVL EV E +K YP +F+RIIGF+ +  V+ +SF
Sbjct:  106 LEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPTAFIRIIGFDNKRQVQCVSF 175          

HSP 2 Score: 72.4034 bits (176), Expect = 4.582e-12
Identity = 30/42 (71.43%), Postives = 32/42 (76.19%), Query Frame = 3
Query:   27 CYMVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 152
            C  VWPP G KKFETLSYLPPLSD  LL ++ YLL  GWIPC
Sbjct:   60 CMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPC 101          
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS_HEVBR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hevea brasiliensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.088e-21
Identity = 46/70 (65.71%), Postives = 55/70 (78.57%), Query Frame = 2
Query:  431 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISF 640
            L+ G VYRE+H SPGYYDGRYWTMWKLPM+GCTDA QVL+E+ E+ K YP  + RIIGF+    V+ ISF
Sbjct:  105 LEHGTVYREYHRSPGYYDGRYWTMWKLPMFGCTDAVQVLQELDEMIKAYPDCYGRIIGFDNVRQVQCISF 174          

HSP 2 Score: 68.9366 bits (167), Expect = 5.067e-11
Identity = 28/42 (66.67%), Postives = 32/42 (76.19%), Query Frame = 3
Query:   27 CYMVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 152
            C  VWPP G K +ETLSYLPPL+ E L KE+ YLLR GW+PC
Sbjct:   59 CMQVWPPRGKKFYETLSYLPPLTREQLAKEVEYLLRKGWVPC 100          
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.088e-21
Identity = 46/78 (58.97%), Postives = 58/78 (74.36%), Query Frame = 2
Query:  431 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISFPCWPAPRR 664
            L+  +VYRE++ SPGYYDGRYW MWKLPM+GCTDATQVL E+ E  K YP S +RIIGF+ +  V+ ISF  +  P +
Sbjct:  105 LEHPFVYRENNRSPGYYDGRYWVMWKLPMFGCTDATQVLAELQEASKTYPTSHIRIIGFDNKRQVQCISFIAYKPPAK 182          

HSP 2 Score: 71.2478 bits (173), Expect = 1.021e-11
Identity = 30/42 (71.43%), Postives = 34/42 (80.95%), Query Frame = 3
Query:   27 CYMVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 152
            C  VWPP GL+KFETLSYLPPLS E+L K+I YL+  GWIPC
Sbjct:   59 CMKVWPPLGLQKFETLSYLPPLSIESLAKQIEYLILKGWIPC 100          
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS3_FRIAG (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.421e-21
Identity = 45/77 (58.44%), Postives = 60/77 (77.92%), Query Frame = 2
Query:  419 WVA*LQ---KGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISF 640
            WV  L+   +G+V R+++ SPGYYDGRYWTMWKLPM+GCTDA QV+KE  E +KEYP +F+R+IGF+    V+ +SF
Sbjct:   97 WVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSF 173          

HSP 2 Score: 70.8626 bits (172), Expect = 1.333e-11
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 3
Query:   27 CYMVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 152
            C  VWP  GLKKFETLSYLP LS E+LLK+I YL+R+GW+PC
Sbjct:   59 CMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPC 100          
The following BLAST results are available for this feature:
BLAST of EY675056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
RBS3_FLAPR2.864e-2264.29Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS3_AMAHP2.864e-2260.53Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS2_FLAPR2.864e-2264.29Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS1_FLAPR2.864e-2264.29Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_HELAN6.380e-2262.86Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_AMAHP6.380e-2264.29Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS2_AMAHP8.332e-2264.29Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS_HEVBR1.088e-2165.71Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_FAGCR1.088e-2158.97Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_FRIAG1.421e-2158.44Ribulose bisphosphate carboxylase small chain 3, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-005-D08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675056 ID=EY675056; Name=EY675056; organism=Citrus sinensis; type=EST; length=992bp
TTTATTAATTTTCCTGTGAGCTTGTATGTTACATGGTGTGGCCACCAACT
GGCTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGA
AGCTTTGCTCAAGGAAATCAGTTACCTTCTCCGCTCCGGCTGGATTCCCT
GCTTGGAATTCGAGTTGGAGGTCATTTCTCTCTCTCTCTCTCTCTCTCTC
TGTCTCTCTTAATATATACTATTATTTTGACGGAACCTTATCTATGTGCT
TTAGGAGAAAAATTACACATGTCATGAATCTATTGGTCAGAGATATCCAT
TCAATATCAAAACCTGCATTAACAATTGCTTACTTAAAATCTAAGCTTTT
GGGTTAAGCGGATTTTATCAGGCAAATGGGTGGTGATATTTGATTTTTTT
TTTTTTTGTTTTTTCTTTTGGGTGGCGTGACTGCAGAAAGGATGGGTGTA
CCGTGAGCACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACAA
TGTGGAAACTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAG
GAGGTTGGGGAGGTCCAAAAGGAATACCCACATTCTTTCGTCCGAATTAT
CGGATTTGAACAACAAGCGCCAGTGGAGTGGATCAGTTTTCCTTGCTGGC
CAGCCCCCAGGCGTCCAAGGTTCCCAATTTAATTGTGGTAACCCCCCAGG
CCATATTGGTTGATTATTATTATGGGTAACCCCCCAAAAAGGATCTTTCA
AATCATGGGGGGTTCGGGTTTGGGTTTAATTTGTGAATTAAGGGCGGGGT
TGGCGGCGGGCCCAAAACTTTTTTGGGTTTTCCCCCCCCACCTTGGGGTT
TTTTTTTTTTTTTTTTTATTTTTTTAAAAAAATTTAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGCGGCCCC
CCCCCCTAAGGAGGGAATAACAAACCACGCTCTTTACAACGT
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