EY674960

Overview
NameEY674960
Unique NameEY674960
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1041
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: ECHB_RAT (Trifunctional enzyme subunit beta, mitochondrial OS=Rattus norvegicus GN=Hadhb PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.590e-13
Identity = 47/128 (36.72%), Postives = 74/128 (57.81%), Query Frame = -2
Query:   27 AMAKPRTGLSMGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDDLISPYR-----GLARDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLR 395
            A+A+  T  +MG   + +A  + + R+ QD+  L SH     A  +G   D++ P++      +++DN +R  +SLE++A L PA+ +  GT+TA NS+ LTDGAS +L+ SE  A   G    AYLR
Sbjct:  214 AVAEFSTNETMGHSADRLAAAFAVSRMEQDKYALRSHSLAKKAQDEGHLSDIV-PFKVPGKDTVSKDNGIRP-SSLEQMAKLKPAFIKPYGTVTAANSSFLTDGASAMLIMSEDRALAMGYKPKAYLR 339          
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: ECHB_PANTR (Trifunctional enzyme subunit beta, mitochondrial OS=Pan troglodytes GN=HADHB PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.590e-13
Identity = 47/128 (36.72%), Postives = 73/128 (57.03%), Query Frame = -2
Query:   27 AMAKPRTGLSMGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDDLISPYR-----GLARDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLR 395
            A+++  T  +MG   + +A  + + RL QDE  L SH     A  +G   D++ P++      + +DN +R  +SLE++A L PA+ +  GT+TA NS+ LTDGAS +L+ +E  A   G    AYLR
Sbjct:  214 AVSEFSTSETMGHSADRLAAAFAVSRLEQDEYALRSHSLAKKAQDEGLLSDVV-PFKVPGKDTVTKDNGIRP-SSLEQMAKLKPAFIKPYGTVTAANSSFLTDGASAMLIMAEEKALAMGYKPKAYLR 339          
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: ECHB_HUMAN (Trifunctional enzyme subunit beta, mitochondrial OS=Homo sapiens GN=HADHB PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 2.590e-13
Identity = 47/128 (36.72%), Postives = 73/128 (57.03%), Query Frame = -2
Query:   27 AMAKPRTGLSMGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDDLISPYR-----GLARDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLR 395
            A+++  T  +MG   + +A  + + RL QDE  L SH     A  +G   D++ P++      + +DN +R  +SLE++A L PA+ +  GT+TA NS+ LTDGAS +L+ +E  A   G    AYLR
Sbjct:  213 AVSEFSTSETMGHSADRLAAAFAVSRLEQDEYALRSHSLAKKAQDEGLLSDVV-PFKVPGKDTVTKDNGIRP-SSLEQMAKLKPAFIKPYGTVTAANSSFLTDGASAMLIMAEEKALAMGYKPKAYLR 338          
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADA_YERPS (3-ketoacyl-CoA thiolase OS=Yersinia pseudotuberculosis GN=fadA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.382e-13
Identity = 52/123 (42.28%), Postives = 67/123 (54.47%), Query Frame = -2
Query:   24 MGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDDLISPYRG------LAR---DNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 365
            MG   E +AK   I R +QDE    SHQR  AA + G F   I    G      L R   D  +R +T+L  LA L PA+D  NGT+TAG S+ L+DGAS +L+ SE+ A   GL   A +R+
Sbjct:  147 MGLTAEMLAKIHNISRQSQDEFAFRSHQRAYAATQAGHFAKEIVATNGHDAEGVLKRFDFDEVIRPETNLSGLAALRPAFDPVNGTVTAGTSSALSDGASAMLIMSESRAKSLGLTPRARIRS 269          
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADA_YERPP (3-ketoacyl-CoA thiolase OS=Yersinia pestis (strain Pestoides F) GN=fadA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.382e-13
Identity = 52/123 (42.28%), Postives = 67/123 (54.47%), Query Frame = -2
Query:   24 MGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDDLISPYRG------LAR---DNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 365
            MG   E +AK   I R +QDE    SHQR  AA + G F   I    G      L R   D  +R +T+L  LA L PA+D  NGT+TAG S+ L+DGAS +L+ SE+ A   GL   A +R+
Sbjct:  147 MGLTAEMLAKIHNISRQSQDEFAFRSHQRAYAATQAGHFAKEIVATNGHDAEGVLKRFDFDEVIRPETNLSGLAALRPAFDPVNGTVTAGTSSALSDGASAMLIMSESRAKSLGLTPRARIRS 269          
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADA_YERPN (3-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=fadA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.382e-13
Identity = 52/123 (42.28%), Postives = 67/123 (54.47%), Query Frame = -2
Query:   24 MGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDDLISPYRG------LAR---DNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 365
            MG   E +AK   I R +QDE    SHQR  AA + G F   I    G      L R   D  +R +T+L  LA L PA+D  NGT+TAG S+ L+DGAS +L+ SE+ A   GL   A +R+
Sbjct:  147 MGLTAEMLAKIHNISRQSQDEFAFRSHQRAYAATQAGHFAKEIVATNGHDAEGVLKRFDFDEVIRPETNLSGLAALRPAFDPVNGTVTAGTSSALSDGASAMLIMSESRAKSLGLTPRARIRS 269          
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADA_YERPE (3-ketoacyl-CoA thiolase OS=Yersinia pestis GN=fadA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.382e-13
Identity = 52/123 (42.28%), Postives = 67/123 (54.47%), Query Frame = -2
Query:   24 MGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDDLISPYRG------LAR---DNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 365
            MG   E +AK   I R +QDE    SHQR  AA + G F   I    G      L R   D  +R +T+L  LA L PA+D  NGT+TAG S+ L+DGAS +L+ SE+ A   GL   A +R+
Sbjct:  147 MGLTAEMLAKIHNISRQSQDEFAFRSHQRAYAATQAGHFAKEIVATNGHDAEGVLKRFDFDEVIRPETNLSGLAALRPAFDPVNGTVTAGTSSALSDGASAMLIMSESRAKSLGLTPRARIRS 269          
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADA_YERPA (3-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=fadA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.382e-13
Identity = 52/123 (42.28%), Postives = 67/123 (54.47%), Query Frame = -2
Query:   24 MGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDDLISPYRG------LAR---DNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 365
            MG   E +AK   I R +QDE    SHQR  AA + G F   I    G      L R   D  +R +T+L  LA L PA+D  NGT+TAG S+ L+DGAS +L+ SE+ A   GL   A +R+
Sbjct:  147 MGLTAEMLAKIHNISRQSQDEFAFRSHQRAYAATQAGHFAKEIVATNGHDAEGVLKRFDFDEVIRPETNLSGLAALRPAFDPVNGTVTAGTSSALSDGASAMLIMSESRAKSLGLTPRARIRS 269          
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADA_YERP3 (3-ketoacyl-CoA thiolase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=fadA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.382e-13
Identity = 52/123 (42.28%), Postives = 67/123 (54.47%), Query Frame = -2
Query:   24 MGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDDLISPYRG------LAR---DNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 365
            MG   E +AK   I R +QDE    SHQR  AA + G F   I    G      L R   D  +R +T+L  LA L PA+D  NGT+TAG S+ L+DGAS +L+ SE+ A   GL   A +R+
Sbjct:  147 MGLTAEMLAKIHNISRQSQDEFAFRSHQRAYAATQAGHFAKEIVATNGHDAEGVLKRFDFDEVIRPETNLSGLAALRPAFDPVNGTVTAGTSSALSDGASAMLIMSESRAKSLGLTPRARIRS 269          
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADA_PSEFR (3-ketoacyl-CoA thiolase OS=Pseudomonas fragi GN=fadA PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 3.382e-13
Identity = 47/123 (38.21%), Postives = 65/123 (52.85%), Query Frame = -2
Query:   24 MGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDDLISPYRGLAR---------DNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 365
            MG   E + K   I R  QD   + SHQ    A  +G F D I P +G            D  +R DT+LE LA L PA++ + GT+TAG S+ +TDGAS +++ S   A + GL  LA +R+
Sbjct:  151 MGLTAEMLGKMHGISREQQDAFAVRSHQLAHKATVEGKFKDEIIPMQGYDENGFLKIFDYDETIRPDTTLESLAALKPAFNPKGGTVTAGTSSQITDGASCMIVMSAQRAKDLGLEPLAVIRS 273          
The following BLAST results are available for this feature:
BLAST of EY674960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
ECHB_RAT2.590e-1336.72Trifunctional enzyme subunit beta, mitochondrial O... [more]
ECHB_PANTR2.590e-1336.72Trifunctional enzyme subunit beta, mitochondrial O... [more]
ECHB_HUMAN2.590e-1336.72Trifunctional enzyme subunit beta, mitochondrial O... [more]
FADA_YERPS3.382e-1342.283-ketoacyl-CoA thiolase OS=Yersinia pseudotubercul... [more]
FADA_YERPP3.382e-1342.283-ketoacyl-CoA thiolase OS=Yersinia pestis (strain... [more]
FADA_YERPN3.382e-1342.283-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Ant... [more]
FADA_YERPE3.382e-1342.283-ketoacyl-CoA thiolase OS=Yersinia pestis GN=fadA... [more]
FADA_YERPA3.382e-1342.283-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Ant... [more]
FADA_YERP33.382e-1342.283-ketoacyl-CoA thiolase OS=Yersinia pseudotubercul... [more]
FADA_PSEFR3.382e-1338.213-ketoacyl-CoA thiolase OS=Pseudomonas fragi GN=fa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-003-H04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674960 ID=EY674960; Name=EY674960; organism=Citrus sinensis; type=EST; length=1041bp
AATTCACCGCTTGCGGTTTCACCGGTCCGCAAATAAGCCAAAACCGGCAA
GCCACGTTCGGCAGCCCATGCCTCGCTGGCCAGCAGCACCACCGAGGCGC
CATCGGTCAGGGGCGTGGAGTTGCCGGCGGTGAGCGTGCCGTTCTGGCGG
TCGTAGGCCGGGGACAGGCCGGCGAGTTTCTCCAGGCTGGTGTCGGCCCG
CAGGTTGTTGTCCCGGGCCAGGCCGCGATACGGGCTGATCAAATCATCGA
AGAAACCCTGCTTGTAGGCCGCGTCCAACCGTTGGTGGCTGGTGAGGGTC
AGTTCGTCCTGGGCCAGGCGCTTGATCTGCCAACGCTTGGCCATTTCTTC
ACAGTGTTCACCCATGGACAGGCCAGTACGCGGTTTCGCCATTGCGCGGC
AGCAGCGGCTTGAAGAACATCGACGGACGCACGCCCATCAAGGCCTTCAA
CTTGGCGCCGGTGCCCTTGGCGCGGTTGGCTGAAAGCAACGTGCGGCGCA
AGGACTCGTTGAAGCCCAAGGGGCCCGTCCGAGGTGGTGGTCGGAAACCG
CCCGGAATGCCCCCCTTTCATCTGCCCCAAGGCCATCTTGTTTCGCCCCC
AGCCACCCCGCCTTTCCCGGCCCGTGGCCGCAAGGTTTGTTTGCAGTCCT
AGGGCCGGGGGGTTTCGGGGAAAAAGCGGGGGGGGAAACCAGGCTTCCCC
CCCGGGGCCAGTTTGAATTCCCCCGGGAAATGTTTGTTCTCCCACCCCGG
GGGGAAAAATCCCCCCAGAGCCCAAGGCTCGGTGAAGGGGTGGAAGAGAG
ACCCACCCGGACCTTGGTAAGGGGTGCAAAACGAAAAAAAAACCAAGGTT
ATGAGTCCAGGAGGGCAAAAAAACAATCTATTAAGGGGGAAGGGCGAAAA
TATGGAAGGGAGGGGTACTCCTATGCCGAAATTATATCCAACCCTTATAA
GGGTGAGTTGGAAGATAGTGACCAACGGGGATGGAGAAAAACTAGATTTT
TTTTCCCGACTCTTTTCTGTATCCTTTGGTGAATTCGACTT
back to top