EY674960

Overview
NameEY674960
Unique NameEY674960
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1041
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: THLA_STAEQ (Probable acetyl-CoA acyltransferase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP0032 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 9.211e-11
Identity = 40/121 (33.06%), Postives = 68/121 (56.20%), Query Frame = -2
Query:   30 MGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDDLISPYRG---------LARDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYL 365
            MG   E + +++QI R  QD+    S Q+   A + G FD  I P            +++D  +R  T+++KLA L PA+ +++G++TAGN++ + DGA+ +L+ +E  A   GL  +A L
Sbjct:  157 MGITAENLVEQYQISRKEQDQFAFDSQQKASRAQQAGVFDAEIVPVEVPQRKGDPLIISQDEGIRPQTTIDKLAQLRPAF-KKDGSVTAGNASGINDGAAAMLVMTEDKAKALGLQPIAVL 276          
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADA_SALTY (3-ketoacyl-CoA thiolase OS=Salmonella typhimurium GN=fadA PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 9.211e-11
Identity = 46/123 (37.40%), Postives = 66/123 (53.66%), Query Frame = -2
Query:   24 MGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDDLISPYRGLARDNNL---------RADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 365
            MG   E +++   I R  QD+    SH R  AA + G F   I P  G   D  L         R +T++E L+ L PA+D  +GT+TAG S+ L+DGA+ +L+ SE+ A E GL   A +R+
Sbjct:  147 MGLTAEMLSRLHGISREMQDQFAARSHARAWAATQSGAFKTEIIPTGGHDADGVLKQFNYDEVIRPETTVEALSTLRPAFDPVSGTVTAGTSSALSDGAAAMLVMSESRARELGLKPRARIRS 269          
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADA_SALTI (3-ketoacyl-CoA thiolase OS=Salmonella typhi GN=fadA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 9.211e-11
Identity = 46/123 (37.40%), Postives = 66/123 (53.66%), Query Frame = -2
Query:   24 MGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDDLISPYRGLARDNNL---------RADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 365
            MG   E +++   I R  QD+    SH R  AA + G F   I P  G   D  L         R +T++E L+ L PA+D  +GT+TAG S+ L+DGA+ +L+ SE+ A E GL   A +R+
Sbjct:  147 MGLTAEMLSRLHGISREMQDQFAARSHARAWAATQSGAFKTEIIPTGGHDADGVLKQFNYDEVIRPETTVEALSTLRPAFDPVSGTVTAGTSSALSDGAAAMLVMSESRARELGLKPRARIRS 269          
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADA_SALPA (3-ketoacyl-CoA thiolase OS=Salmonella paratyphi A GN=fadA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 9.211e-11
Identity = 46/123 (37.40%), Postives = 66/123 (53.66%), Query Frame = -2
Query:   24 MGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDDLISPYRGLARDNNL---------RADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 365
            MG   E +++   I R  QD+    SH R  AA + G F   I P  G   D  L         R +T++E L+ L PA+D  +GT+TAG S+ L+DGA+ +L+ SE+ A E GL   A +R+
Sbjct:  147 MGLTAEMLSRLHGISREMQDQFAARSHARAWAATQSGAFKTEIIPTGGHDADGVLKQFNYDEVIRPETTVEALSTLRPAFDPVSGTVTAGTSSALSDGAAAMLVMSESRARELGLKPRARIRS 269          
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADA_SALCH (3-ketoacyl-CoA thiolase OS=Salmonella choleraesuis GN=fadA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 9.211e-11
Identity = 46/123 (37.40%), Postives = 66/123 (53.66%), Query Frame = -2
Query:   24 MGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDDLISPYRGLARDNNL---------RADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 365
            MG   E +++   I R  QD+    SH R  AA + G F   I P  G   D  L         R +T++E L+ L PA+D  +GT+TAG S+ L+DGA+ +L+ SE+ A E GL   A +R+
Sbjct:  147 MGLTAEMLSRLHGISREMQDQFAARSHARAWAATQSGAFKTEIIPTGGHDADGVLKQFNYDEVIRPETTVEALSTLRPAFDPVSGTVTAGTSSALSDGAAAMLVMSESRARELGLKPRARIRS 269          
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADA_PSEA6 (3-ketoacyl-CoA thiolase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=fadA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 9.211e-11
Identity = 43/131 (32.82%), Postives = 68/131 (51.91%), Query Frame = -2
Query:   27 AMAKPRTGLSMGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDDLISP--------YRGLARDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLR 395
            A    R   SMG   E + ++  I R  QD     SHQ+  AA  +G ++++++          + +  D  +R D++ E ++GL P +D  NGT+TAG S+ L+DGAS +L+ S   A   GL   A +R
Sbjct:  137 AKTAARASGSMGMTAELLGRQNGISREMQDAFGARSHQKAHAAAVEGRWNEIVATEGHDADGILKLIDADETIRPDSTTESMSGLRPVFDPVNGTVTAGTSSALSDGASAMLIMSADKAKALGLTPRAKIR 267          
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADA_ENTCL (3-ketoacyl-CoA thiolase OS=Enterobacter cloacae GN=fadA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 9.211e-11
Identity = 45/123 (36.59%), Postives = 66/123 (53.66%), Query Frame = -2
Query:   24 MGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDDLISPYRG---------LARDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 365
            MG   E +++   I R  QD     SH R  AA + G F + I P  G          + D  +R +T++E L+ L PA+D   GT+TAG S+ L+DGA+ +L+ SE+ A E GL   A +R+
Sbjct:  147 MGLTAEMLSRLHGISREMQDAFAARSHARAWAATQSGAFKNEIIPTGGHDADGVLKQFSYDEVIRPETTVEALSTLRPAFDPVTGTVTAGTSSALSDGAAAMLVMSESRARELGLTPRARVRS 269          
The following BLAST results are available for this feature:
BLAST of EY674960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
THLA_STAEQ9.211e-1133.06Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]
FADA_SALTY9.211e-1137.403-ketoacyl-CoA thiolase OS=Salmonella typhimurium ... [more]
FADA_SALTI9.211e-1137.403-ketoacyl-CoA thiolase OS=Salmonella typhi GN=fad... [more]
FADA_SALPA9.211e-1137.403-ketoacyl-CoA thiolase OS=Salmonella paratyphi A ... [more]
FADA_SALCH9.211e-1137.403-ketoacyl-CoA thiolase OS=Salmonella choleraesuis... [more]
FADA_PSEA69.211e-1132.823-ketoacyl-CoA thiolase OS=Pseudoalteromonas atlan... [more]
FADA_ENTCL9.211e-1136.593-ketoacyl-CoA thiolase OS=Enterobacter cloacae GN... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-003-H04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674960 ID=EY674960; Name=EY674960; organism=Citrus sinensis; type=EST; length=1041bp
AATTCACCGCTTGCGGTTTCACCGGTCCGCAAATAAGCCAAAACCGGCAA
GCCACGTTCGGCAGCCCATGCCTCGCTGGCCAGCAGCACCACCGAGGCGC
CATCGGTCAGGGGCGTGGAGTTGCCGGCGGTGAGCGTGCCGTTCTGGCGG
TCGTAGGCCGGGGACAGGCCGGCGAGTTTCTCCAGGCTGGTGTCGGCCCG
CAGGTTGTTGTCCCGGGCCAGGCCGCGATACGGGCTGATCAAATCATCGA
AGAAACCCTGCTTGTAGGCCGCGTCCAACCGTTGGTGGCTGGTGAGGGTC
AGTTCGTCCTGGGCCAGGCGCTTGATCTGCCAACGCTTGGCCATTTCTTC
ACAGTGTTCACCCATGGACAGGCCAGTACGCGGTTTCGCCATTGCGCGGC
AGCAGCGGCTTGAAGAACATCGACGGACGCACGCCCATCAAGGCCTTCAA
CTTGGCGCCGGTGCCCTTGGCGCGGTTGGCTGAAAGCAACGTGCGGCGCA
AGGACTCGTTGAAGCCCAAGGGGCCCGTCCGAGGTGGTGGTCGGAAACCG
CCCGGAATGCCCCCCTTTCATCTGCCCCAAGGCCATCTTGTTTCGCCCCC
AGCCACCCCGCCTTTCCCGGCCCGTGGCCGCAAGGTTTGTTTGCAGTCCT
AGGGCCGGGGGGTTTCGGGGAAAAAGCGGGGGGGGAAACCAGGCTTCCCC
CCCGGGGCCAGTTTGAATTCCCCCGGGAAATGTTTGTTCTCCCACCCCGG
GGGGAAAAATCCCCCCAGAGCCCAAGGCTCGGTGAAGGGGTGGAAGAGAG
ACCCACCCGGACCTTGGTAAGGGGTGCAAAACGAAAAAAAAACCAAGGTT
ATGAGTCCAGGAGGGCAAAAAAACAATCTATTAAGGGGGAAGGGCGAAAA
TATGGAAGGGAGGGGTACTCCTATGCCGAAATTATATCCAACCCTTATAA
GGGTGAGTTGGAAGATAGTGACCAACGGGGATGGAGAAAAACTAGATTTT
TTTTCCCGACTCTTTTCTGTATCCTTTGGTGAATTCGACTT
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