EY674960

Overview
NameEY674960
Unique NameEY674960
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1041
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADI_SHELP (3-ketoacyl-CoA thiolase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=fadI PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 9.819e-21
Identity = 57/130 (43.85%), Postives = 80/130 (61.54%), Query Frame = -2 
Query:   24 AMAKPRTGLSMGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDDLIS-----PYRG-LARDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 395
            A+A+  TGLSMG+  E+MAK + I R  QD L   SH      +  G   D +      PY+  + RDNN+R ++SL+  A L PA+DR++G++TA NSTPLTDGAS VLL SE+ A   G   + Y+++
Sbjct:  174 AVAEYSTGLSMGQTAEQMAKTYNISRADQDALAHRSHTLATETWDSGHLRDEVMVAHVPPYKSFIDRDNNIRENSSLDSYAKLRPAFDRKHGSVTAANSTPLTDGASAVLLMSESRAKALGYEPIGYIKS 303
[Close]
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADI_AERHH (3-ketoacyl-CoA thiolase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=fadI PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 9.819e-21
Identity = 60/130 (46.15%), Postives = 77/130 (59.23%), Query Frame = -2 
Query:   24 AMAKPRTGLSMGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQG-----FFDDLISPYRG-LARDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 395
            A+A+  TGLSMG+  E+MAK  QI R AQD L   SH     A+  G      F   + PY+  L RDNN+R  + L   A L P +DR +G++TA N+TPLTDGA+ VLL  E  A E GL  L Y+R+
Sbjct:  174 AVAEYSTGLSMGQTAEQMAKSHQISREAQDALAHRSHTLAAQAWADGKLSGEVFTAHVPPYKAPLERDNNIRESSDLASYAKLKPVFDRVHGSVTAANATPLTDGAAAVLLMREGRARELGLEPLGYIRS 303
[Close]
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADI_SHESW (3-ketoacyl-CoA thiolase OS=Shewanella sp. (strain W3-18-1) GN=fadI PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.675e-20
Identity = 57/130 (43.85%), Postives = 78/130 (60.00%), Query Frame = -2 
Query:   24 AMAKPRTGLSMGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDDL-----ISPYRG-LARDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 395
            A+A+  TGLSMG+  E+MAK + I R  QD L   SH      +  G   D      I PY+  + RDNN+R ++ LE  A L PA+D+Q+GT+TA NSTPLTDGAS ++L SE  A   G   + Y+++
Sbjct:  174 AVAEYSTGLSMGQTAEQMAKTYNISRADQDALAHRSHTLASETWASGHLRDEVMVAHIPPYKQFIDRDNNIRENSVLESYAKLRPAFDKQHGTVTAANSTPLTDGASAIILMSEGRAKALGYQPIGYIKS 303
[Close]
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADI_SHEPC (3-ketoacyl-CoA thiolase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=fadI PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.675e-20
Identity = 57/130 (43.85%), Postives = 78/130 (60.00%), Query Frame = -2 
Query:   24 AMAKPRTGLSMGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDDL-----ISPYRG-LARDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 395
            A+A+  TGLSMG+  E+MAK + I R  QD L   SH      +  G   D      I PY+  + RDNN+R ++ LE  A L PA+D+Q+GT+TA NSTPLTDGAS ++L SE  A   G   + Y+++
Sbjct:  174 AVAEYSTGLSMGQTAEQMAKTYNISRADQDALAHRSHTLASETWASGHLRDEVMVAHIPPYKQFIDRDNNIRENSVLESYAKLRPAFDKQHGTVTAANSTPLTDGASAIILMSEGRAKALGYQPIGYIKS 303
[Close]
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADI_SHESH (3-ketoacyl-CoA thiolase OS=Shewanella sediminis (strain HAW-EB3) GN=fadI PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.187e-20
Identity = 56/130 (43.08%), Postives = 79/130 (60.77%), Query Frame = -2 
Query:   24 AMAKPRTGLSMGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDDLIS-----PYRG-LARDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 395
            A+A+  TGLSMG+  E+MAK + I R  QD L   SH      +  G   D +      PY+  + RDNN+R ++++E  A L PA+DR++GT+TA  STPLTDGAS VLL SE+ A   G   + Y+++
Sbjct:  174 AVAEFSTGLSMGQTAEQMAKTYNISRADQDALAHRSHSLATETWNAGHLTDEVMAAHVPPYKSFIDRDNNIRENSTIESYAKLRPAFDRKHGTVTAATSTPLTDGASAVLLMSESRAKALGYDPIGYIKS 303
[Close]
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADI_SHEB9 (3-ketoacyl-CoA thiolase OS=Shewanella baltica (strain OS195) GN=fadI PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.187e-20
Identity = 56/130 (43.08%), Postives = 78/130 (60.00%), Query Frame = -2 
Query:   24 AMAKPRTGLSMGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDDLIS-----PYRG-LARDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 395
            A+A+  TGLSMG+  E+MAK + I R  QD L   SH      +  G   D +      PY+  + RDNN+R ++ LE  A L PA+D+Q+GT+TA NSTPLTDGAS ++L SE  A   G   + Y+++
Sbjct:  174 AVAEYSTGLSMGQTAEQMAKTYNISRADQDALAHRSHTLASETWASGHLRDEVMVAHVPPYKQFIDRDNNIRENSVLESYAKLRPAFDKQHGTVTAANSTPLTDGASAIILMSEGRAKALGYQPIGYIKS 303
[Close]
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADI_SHEB8 (3-ketoacyl-CoA thiolase OS=Shewanella baltica (strain OS185) GN=fadI PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.187e-20
Identity = 56/130 (43.08%), Postives = 78/130 (60.00%), Query Frame = -2 
Query:   24 AMAKPRTGLSMGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDDLIS-----PYRG-LARDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 395
            A+A+  TGLSMG+  E+MAK + I R  QD L   SH      +  G   D +      PY+  + RDNN+R ++ LE  A L PA+D+Q+GT+TA NSTPLTDGAS ++L SE  A   G   + Y+++
Sbjct:  174 AVAEYSTGLSMGQTAEQMAKTYNISRADQDALAHRSHTLASETWASGHLRDEVMVAHVPPYKQFIDRDNNIRENSVLESYAKLRPAFDKQHGTVTAANSTPLTDGASAIILMSEGRAKALGYQPIGYIKS 303
[Close]
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADI_SHEB5 (3-ketoacyl-CoA thiolase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=fadI PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.187e-20
Identity = 56/130 (43.08%), Postives = 78/130 (60.00%), Query Frame = -2 
Query:   24 AMAKPRTGLSMGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDDLIS-----PYRG-LARDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 395
            A+A+  TGLSMG+  E+MAK + I R  QD L   SH      +  G   D +      PY+  + RDNN+R ++ LE  A L PA+D+Q+GT+TA NSTPLTDGAS ++L SE  A   G   + Y+++
Sbjct:  174 AVAEYSTGLSMGQTAEQMAKTYNISRADQDALAHRSHTLASETWASGHLRDEVMVAHVPPYKQFIDRDNNIRENSVLESYAKLRPAFDKQHGTVTAANSTPLTDGASAIILMSEGRAKALGYQPIGYIKS 303
[Close]
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADI_SHEB2 (3-ketoacyl-CoA thiolase OS=Shewanella baltica (strain OS223) GN=fadI PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.187e-20
Identity = 56/130 (43.08%), Postives = 78/130 (60.00%), Query Frame = -2 
Query:   24 AMAKPRTGLSMGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDDLIS-----PYRG-LARDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 395
            A+A+  TGLSMG+  E+MAK + I R  QD L   SH      +  G   D +      PY+  + RDNN+R ++ LE  A L PA+D+Q+GT+TA NSTPLTDGAS ++L SE  A   G   + Y+++
Sbjct:  174 AVAEYSTGLSMGQTAEQMAKTYNISRADQDALAHRSHTLASETWASGHLRDEVMVAHVPPYKQFIDRDNNIRENSVLESYAKLRPAFDKQHGTVTAANSTPLTDGASAIILMSEGRAKALGYQPIGYIKS 303
[Close]
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADI_PSEHT (3-ketoacyl-CoA thiolase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=fadI PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.731e-20
Identity = 56/130 (43.08%), Postives = 79/130 (60.77%), Query Frame = -2 
Query:   24 AMAKPRTGLSMGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDDLIS-----PYRG-LARDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 395
            A+A+  TGLSMG+  E+MAK   I R  QD L   SH     A+  G   D +      PY+  +  DNN+R ++++E  A L P +DRQ+GT+TA N+TPLTDGA+ VL+ SE+ A   G  +L Y+R+
Sbjct:  174 AVAEYSTGLSMGQTAEQMAKTHNISREDQDALAHRSHSLATQAWADGKLKDEVMTAHLPPYKSFIEEDNNIRKNSTVEGYAKLKPVFDRQHGTVTAANATPLTDGAAAVLMMSESKAKALGYEILGYVRS 303
The following BLAST results are available for this feature:
BLAST of EY674960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
FADI_SHELP9.819e-2143.853-ketoacyl-CoA thiolase OS=Shewanella loihica (str... [more]
FADI_AERHH9.819e-2146.153-ketoacyl-CoA thiolase OS=Aeromonas hydrophila su... [more]
FADI_SHESW1.675e-2043.853-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ... [more]
FADI_SHEPC1.675e-2043.853-ketoacyl-CoA thiolase OS=Shewanella putrefaciens... [more]
FADI_SHESH2.187e-2043.083-ketoacyl-CoA thiolase OS=Shewanella sediminis (s... [more]
FADI_SHEB92.187e-2043.083-ketoacyl-CoA thiolase OS=Shewanella baltica (str... [more]
FADI_SHEB82.187e-2043.083-ketoacyl-CoA thiolase OS=Shewanella baltica (str... [more]
FADI_SHEB52.187e-2043.083-ketoacyl-CoA thiolase OS=Shewanella baltica (str... [more]
FADI_SHEB22.187e-2043.083-ketoacyl-CoA thiolase OS=Shewanella baltica (str... [more]
FADI_PSEHT3.731e-2043.083-ketoacyl-CoA thiolase OS=Pseudoalteromonas halop... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-003-H04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674960 ID=EY674960; Name=EY674960; organism=Citrus sinensis; type=EST; length=1041bp
AATTCACCGCTTGCGGTTTCACCGGTCCGCAAATAAGCCAAAACCGGCAA
GCCACGTTCGGCAGCCCATGCCTCGCTGGCCAGCAGCACCACCGAGGCGC
CATCGGTCAGGGGCGTGGAGTTGCCGGCGGTGAGCGTGCCGTTCTGGCGG
TCGTAGGCCGGGGACAGGCCGGCGAGTTTCTCCAGGCTGGTGTCGGCCCG
CAGGTTGTTGTCCCGGGCCAGGCCGCGATACGGGCTGATCAAATCATCGA
AGAAACCCTGCTTGTAGGCCGCGTCCAACCGTTGGTGGCTGGTGAGGGTC
AGTTCGTCCTGGGCCAGGCGCTTGATCTGCCAACGCTTGGCCATTTCTTC
ACAGTGTTCACCCATGGACAGGCCAGTACGCGGTTTCGCCATTGCGCGGC
AGCAGCGGCTTGAAGAACATCGACGGACGCACGCCCATCAAGGCCTTCAA
CTTGGCGCCGGTGCCCTTGGCGCGGTTGGCTGAAAGCAACGTGCGGCGCA
AGGACTCGTTGAAGCCCAAGGGGCCCGTCCGAGGTGGTGGTCGGAAACCG
CCCGGAATGCCCCCCTTTCATCTGCCCCAAGGCCATCTTGTTTCGCCCCC
AGCCACCCCGCCTTTCCCGGCCCGTGGCCGCAAGGTTTGTTTGCAGTCCT
AGGGCCGGGGGGTTTCGGGGAAAAAGCGGGGGGGGAAACCAGGCTTCCCC
CCCGGGGCCAGTTTGAATTCCCCCGGGAAATGTTTGTTCTCCCACCCCGG
GGGGAAAAATCCCCCCAGAGCCCAAGGCTCGGTGAAGGGGTGGAAGAGAG
ACCCACCCGGACCTTGGTAAGGGGTGCAAAACGAAAAAAAAACCAAGGTT
ATGAGTCCAGGAGGGCAAAAAAACAATCTATTAAGGGGGAAGGGCGAAAA
TATGGAAGGGAGGGGTACTCCTATGCCGAAATTATATCCAACCCTTATAA
GGGTGAGTTGGAAGATAGTGACCAACGGGGATGGAGAAAAACTAGATTTT
TTTTCCCGACTCTTTTCTGTATCCTTTGGTGAATTCGACTT
back to top