EY674960

Overview
NameEY674960
Unique NameEY674960
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1041
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADI_SHEHH (3-ketoacyl-CoA thiolase OS=Shewanella halifaxensis (strain HAW-EB4) GN=fadI PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 6.364e-20
Identity = 56/130 (43.08%), Postives = 79/130 (60.77%), Query Frame = -2
Query:   24 AMAKPRTGLSMGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDDLIS-----PYRG-LARDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 395
            A+A+  TGLSMG+  E+MAK + I R  QD L   SH      +  G   + +      PY+  + RDNN+R +++LE  A L PA+DR++G++TA NSTPLTDGAS VLL SE  A   G   + Y+++
Sbjct:  174 AVAEYSTGLSMGQTAEQMAKTYNISRADQDALAHRSHTLATETWNAGKLAEEVMAAHVPPYKSFIDRDNNIRENSTLESYAKLRPAFDRKHGSVTAANSTPLTDGASAVLLMSEGRAKALGYTPIGYIKS 303          
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADI_SHEWM (3-ketoacyl-CoA thiolase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=fadI PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 8.312e-20
Identity = 55/130 (42.31%), Postives = 78/130 (60.00%), Query Frame = -2
Query:   24 AMAKPRTGLSMGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQG-----FFDDLISPYRG-LARDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 395
            A+A+  TGLSMG+  E+MAK + I R  QD L   SH      +  G          + PY+  + RDNN+R ++S+E  A L PA+DR++GT+TA  STPLTDGAS +LL SE+ A   G   + Y+++
Sbjct:  174 AVAEYSTGLSMGQTAEQMAKTYNISRADQDALAHRSHSLATETWNSGNLAQEVMTAHVPPYKAFIDRDNNIRENSSIESYAKLRPAFDRKHGTVTAATSTPLTDGASAILLMSESRAKALGYNPIGYIKS 303          
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADI_SHEPW (3-ketoacyl-CoA thiolase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=fadI PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 8.312e-20
Identity = 56/130 (43.08%), Postives = 78/130 (60.00%), Query Frame = -2
Query:   24 AMAKPRTGLSMGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDDLIS-----PYRG-LARDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 395
            A+A+  TGLSMG+  E+MAK + I R  QD L   SH      +  G   + +      PY+  + RDNN+R ++ LE  A L PA+DR++G++TA NSTPLTDGAS VLL SE  A   G   + Y+++
Sbjct:  174 AVAEYSTGLSMGQTAEQMAKTYNISRADQDALAHRSHTLATETWNAGKLAEEVMAAHVPPYKAFIDRDNNIRENSKLESYAKLRPAFDRKHGSVTAANSTPLTDGASAVLLMSEGRAKALGYTPIGYIKS 303          
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADI_SHEPA (3-ketoacyl-CoA thiolase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=fadI PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 8.312e-20
Identity = 56/130 (43.08%), Postives = 78/130 (60.00%), Query Frame = -2
Query:   24 AMAKPRTGLSMGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDDLIS-----PYRG-LARDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 395
            A+A+  TGLSMG+  E+MAK + I R  QD L   SH      +  G   + +      PY+  + RDNN+R ++ LE  A L PA+DR++G++TA NSTPLTDGAS VLL SE  A   G   + Y+++
Sbjct:  174 AVAEYSTGLSMGQTAEQMAKTYNISRADQDALAHRSHTLATETWNAGKLAEEVMVAHVPPYKAFIDRDNNIRENSKLESYAKLRPAFDRKHGSVTAANSTPLTDGASAVLLMSEGRAKALGYTPIGYIKS 303          
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADI_SHEFN (3-ketoacyl-CoA thiolase OS=Shewanella frigidimarina (strain NCIMB 400) GN=fadI PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 8.312e-20
Identity = 56/130 (43.08%), Postives = 78/130 (60.00%), Query Frame = -2
Query:   24 AMAKPRTGLSMGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDDL-----ISPYRG-LARDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 395
            A+A+  TGLSMG+  E+MAK + I R  QD L   SH      +  G   +      I PY+  + RDNN+R ++ LE  A L PA+DR++GT+TA NSTPLTDGAS ++L SE  A   G   + Y+++
Sbjct:  174 AVAEYSTGLSMGQTAEQMAKTYNISRADQDALAHRSHTLATETWNSGHLRNEVMTAHIPPYKQFIDRDNNIRENSVLESYAKLRPAFDRKHGTVTAANSTPLTDGASAIILMSEGRAKALGYQPIGYIKS 303          
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADI_ALTMD (3-ketoacyl-CoA thiolase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=fadI PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 8.312e-20
Identity = 56/130 (43.08%), Postives = 80/130 (61.54%), Query Frame = -2
Query:   24 AMAKPRTGLSMGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDDLI-----SPYRG-LARDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 395
            A+A+  TGLSMG+  E+MAK  QI R  QD+L   SH     +++ G     +      PY+  L RDNN+R D+ LE  A L P +D++ G++TA N+TPLTDGAS VL+ +E+ A E G   L Y+++
Sbjct:  174 AVAEYSTGLSMGQTAEQMAKTHQISREEQDKLAHRSHSLAAESWEAGKLSSEVMTAYAEPYKAALERDNNVRFDSKLEGYAKLRPVFDKKYGSVTAANATPLTDGASAVLMMTESRAKELGYTPLGYIKS 303          
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADI_SHEDO (3-ketoacyl-CoA thiolase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=fadI PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.418e-19
Identity = 55/130 (42.31%), Postives = 79/130 (60.77%), Query Frame = -2
Query:   24 AMAKPRTGLSMGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDDLI-----SPYRG-LARDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 395
            A+A+  TGLSMG+  E+MAK + I R  QD L   SH      +  G   D +     +PY+  + RDNN+R ++ LE  A L PA+DR++G++TA NSTPLTDGAS ++L SE  A   G   + Y+++
Sbjct:  174 AVAEYSTGLSMGQTAEQMAKTYGISRADQDALAHRSHTLATETWNSGNLRDEVMTAHVAPYKQFIDRDNNIRENSVLESYAKLRPAFDRKHGSVTAANSTPLTDGASAIILMSEGRAKALGYQPIGYIKS 303          
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADI_VIBFM (3-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain MJ11) GN=fadI PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.418e-19
Identity = 58/130 (44.62%), Postives = 75/130 (57.69%), Query Frame = -2
Query:   24 AMAKPRTGLSMGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDDLI-----SPYR-GLARDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 395
            A+A+  TG+SMG+  E+MAK   I R  QD L   SH     A+K G   D +      PY   L  DNN+R D+ L   A L PA+DR+ G++TA NSTPLTDG + +LL SE  A E G   L Y+R+
Sbjct:  180 AVAEYSTGISMGQTAEQMAKSHGITREEQDALAHRSHTLAAKAWKDGLIQDEVMTAFPEPYTVWLDHDNNIRHDSELASYAKLRPAFDRKYGSVTAANSTPLTDGGAALLLMSEKRAKELGYEPLGYIRS 309          
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADI_SHESR (3-ketoacyl-CoA thiolase OS=Shewanella sp. (strain MR-7) GN=fadI PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.159e-19
Identity = 53/130 (40.77%), Postives = 77/130 (59.23%), Query Frame = -2
Query:   24 AMAKPRTGLSMGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDDLIS-----PYRG-LARDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 395
            A+A+  TGLSMG+  E+MAK + I R  QD L   SH      +  G   D +      PY+  + RDNN+R ++ L   A L PA+D+++G++TA NSTPLTDGAS ++L SE  A   G   + Y+++
Sbjct:  174 AVAEYSTGLSMGQTAEQMAKTYNISRADQDALAHRSHTLASETWASGHLRDEVMVAHVPPYKQFIERDNNIRENSDLSSYAKLRPAFDKKHGSVTAANSTPLTDGASAIILMSEGRAKALGYQPIGYIKS 303          
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADI_SHESM (3-ketoacyl-CoA thiolase OS=Shewanella sp. (strain MR-4) GN=fadI PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.159e-19
Identity = 53/130 (40.77%), Postives = 77/130 (59.23%), Query Frame = -2
Query:   24 AMAKPRTGLSMGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDDLIS-----PYRG-LARDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 395
            A+A+  TGLSMG+  E+MAK + I R  QD L   SH      +  G   D +      PY+  + RDNN+R ++ L   A L PA+D+++G++TA NSTPLTDGAS ++L SE  A   G   + Y+++
Sbjct:  174 AVAEYSTGLSMGQTAEQMAKTYNISRADQDALAHRSHTLASETWASGHLRDEVMVAHVPPYKQFIERDNNIRENSDLSSYAKLRPAFDKKHGSVTAANSTPLTDGASAIILMSEGRAKALGYQPIGYIKS 303          
The following BLAST results are available for this feature:
BLAST of EY674960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
FADI_SHEHH6.364e-2043.083-ketoacyl-CoA thiolase OS=Shewanella halifaxensis... [more]
FADI_SHEWM8.312e-2042.313-ketoacyl-CoA thiolase OS=Shewanella woodyi (stra... [more]
FADI_SHEPW8.312e-2043.083-ketoacyl-CoA thiolase OS=Shewanella piezotoleran... [more]
FADI_SHEPA8.312e-2043.083-ketoacyl-CoA thiolase OS=Shewanella pealeana (st... [more]
FADI_SHEFN8.312e-2043.083-ketoacyl-CoA thiolase OS=Shewanella frigidimarin... [more]
FADI_ALTMD8.312e-2043.083-ketoacyl-CoA thiolase OS=Alteromonas macleodii (... [more]
FADI_SHEDO1.418e-1942.313-ketoacyl-CoA thiolase OS=Shewanella denitrifican... [more]
FADI_VIBFM2.418e-1944.623-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain... [more]
FADI_SHESR3.159e-1940.773-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ... [more]
FADI_SHESM3.159e-1940.773-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-003-H04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674960 ID=EY674960; Name=EY674960; organism=Citrus sinensis; type=EST; length=1041bp
AATTCACCGCTTGCGGTTTCACCGGTCCGCAAATAAGCCAAAACCGGCAA
GCCACGTTCGGCAGCCCATGCCTCGCTGGCCAGCAGCACCACCGAGGCGC
CATCGGTCAGGGGCGTGGAGTTGCCGGCGGTGAGCGTGCCGTTCTGGCGG
TCGTAGGCCGGGGACAGGCCGGCGAGTTTCTCCAGGCTGGTGTCGGCCCG
CAGGTTGTTGTCCCGGGCCAGGCCGCGATACGGGCTGATCAAATCATCGA
AGAAACCCTGCTTGTAGGCCGCGTCCAACCGTTGGTGGCTGGTGAGGGTC
AGTTCGTCCTGGGCCAGGCGCTTGATCTGCCAACGCTTGGCCATTTCTTC
ACAGTGTTCACCCATGGACAGGCCAGTACGCGGTTTCGCCATTGCGCGGC
AGCAGCGGCTTGAAGAACATCGACGGACGCACGCCCATCAAGGCCTTCAA
CTTGGCGCCGGTGCCCTTGGCGCGGTTGGCTGAAAGCAACGTGCGGCGCA
AGGACTCGTTGAAGCCCAAGGGGCCCGTCCGAGGTGGTGGTCGGAAACCG
CCCGGAATGCCCCCCTTTCATCTGCCCCAAGGCCATCTTGTTTCGCCCCC
AGCCACCCCGCCTTTCCCGGCCCGTGGCCGCAAGGTTTGTTTGCAGTCCT
AGGGCCGGGGGGTTTCGGGGAAAAAGCGGGGGGGGAAACCAGGCTTCCCC
CCCGGGGCCAGTTTGAATTCCCCCGGGAAATGTTTGTTCTCCCACCCCGG
GGGGAAAAATCCCCCCAGAGCCCAAGGCTCGGTGAAGGGGTGGAAGAGAG
ACCCACCCGGACCTTGGTAAGGGGTGCAAAACGAAAAAAAAACCAAGGTT
ATGAGTCCAGGAGGGCAAAAAAACAATCTATTAAGGGGGAAGGGCGAAAA
TATGGAAGGGAGGGGTACTCCTATGCCGAAATTATATCCAACCCTTATAA
GGGTGAGTTGGAAGATAGTGACCAACGGGGATGGAGAAAAACTAGATTTT
TTTTCCCGACTCTTTTCTGTATCCTTTGGTGAATTCGACTT
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