EY674960

Overview
NameEY674960
Unique NameEY674960
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1041
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADI_SHESA (3-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ANA-3) GN=fadI PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.159e-19
Identity = 53/130 (40.77%), Postives = 77/130 (59.23%), Query Frame = -2
Query:   24 AMAKPRTGLSMGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDDLIS-----PYRG-LARDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 395
            A+A+  TGLSMG+  E+MAK + I R  QD L   SH      +  G   D +      PY+  + RDNN+R ++ L   A L PA+D+++G++TA NSTPLTDGAS ++L SE  A   G   + Y+++
Sbjct:  174 AVAEYSTGLSMGQTAEQMAKTYNISRADQDALAHRSHTLASETWASGHLRDEVMVAHVPPYKQFIERDNNIRENSDLSSYAKLRPAFDKKHGSVTAANSTPLTDGASAIILMSEGRAKALGYQPIGYIKS 303          
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADI_SHEON (3-ketoacyl-CoA thiolase OS=Shewanella oneidensis GN=fadI PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.159e-19
Identity = 53/130 (40.77%), Postives = 78/130 (60.00%), Query Frame = -2
Query:   24 AMAKPRTGLSMGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDDLIS-----PYRG-LARDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 395
            A+A+  TGLSMG+  E+MAK + I R  QD L   SH   +  +  G   D +      PY+  + RDNN+R ++ L   A L PA+D+++G++TA NSTPLTDGAS ++L SE  A   G   + Y+++
Sbjct:  174 AVAEYSTGLSMGQTAEQMAKTYNISRADQDALAHRSHTLANETWASGHLRDEVMVAHVPPYKQFIERDNNIRENSDLASYAKLRPAFDKKHGSVTAANSTPLTDGASAIILMSEGRAKALGYQPIGYIKS 303          
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADI_VIBF1 (3-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=fadI PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 5.388e-19
Identity = 57/130 (43.85%), Postives = 74/130 (56.92%), Query Frame = -2
Query:   24 AMAKPRTGLSMGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDDLI-----SPYRG-LARDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 395
            A+A+  TG+SMG+  E+MAK   I R  QD L   SH     A+K G   D +      PY   L  DNN+R D+ L   A L PA+D + G++TA NSTPLTDG + +LL SE  A E G   L Y+R+
Sbjct:  180 AVAEYSTGISMGQTAEQMAKSHGITREEQDALAHRSHTLAAKAWKDGLIQDEVMTAFPEPYTAWLDHDNNIRHDSDLASYAKLRPAFDHKYGSVTAANSTPLTDGGAALLLMSEKRAKELGYEPLGYIRS 309          
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADI_PSEA6 (3-ketoacyl-CoA thiolase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=fadI PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 9.190e-19
Identity = 53/130 (40.77%), Postives = 79/130 (60.77%), Query Frame = -2
Query:   24 AMAKPRTGLSMGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDDLI-----SPYRG-LARDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 395
            A+A+  TGLSMG+  E+MAK   I R  QD+L   SH     ++ +G     +     +PY+    +DNN+R D+ LE  A L P +D+++GT+TA N+TPLTDGAS VL+ +E+ A   G   L Y+++
Sbjct:  174 AVAEYSTGLSMGQTAEQMAKSHSISRADQDKLAHRSHSLAAQSWNEGKLAGEVMTAYPAPYKSAFEKDNNIRFDSKLEGYAKLRPVFDKKHGTVTAANATPLTDGASAVLMMTESRAKALGYTPLGYIKS 303          
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADI_COLP3 (3-ketoacyl-CoA thiolase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=fadI PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.561e-18
Identity = 53/130 (40.77%), Postives = 76/130 (58.46%), Query Frame = -2
Query:   24 AMAKPRTGLSMGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDDLI-----SPYRG-LARDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 395
            A+A+  TG+SMG+  E+MAK +QI R  QD L   SH     ++++G     +      PY+  + RDN  R ++ LE  A L P +DR++GT+TA  STPLTDG + +LL  E  A E G   L Y+R+
Sbjct:  173 AVAEYSTGISMGQTAEQMAKTYQISRQDQDALAHRSHTLATKSWQEGKLAGEVMTVHAEPYKSFIDRDNCFRENSVLESYAKLKPVFDRKHGTVTAATSTPLTDGGAAILLMREGRAKELGYKPLGYIRS 302          
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADA_VIBFM (3-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain MJ11) GN=fadA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 8.602e-17
Identity = 52/123 (42.28%), Postives = 70/123 (56.91%), Query Frame = -2
Query:   24 MGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDDLISPYRG---------LARDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 365
            MG   E + K   I R  QD   L SHQ+   A  +G+FD  I P  G         +  D  +R +T+LE LA L PA+D  NGT+TAG+S+ L+DGAS +L+ SE  A E GLP+ A +R+
Sbjct:  147 MGLTAEMLGKMHGISREQQDAFALASHQKAHKATIEGYFDSEILPIEGHDENGVLTLVTHDEVIRPETTLEGLAALRPAFDPANGTVTAGSSSALSDGASAMLVMSEEKANELGLPIRAKVRS 269          
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADA_VIBF1 (3-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=fadA PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 8.602e-17
Identity = 52/123 (42.28%), Postives = 70/123 (56.91%), Query Frame = -2
Query:   24 MGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDDLISPYRG---------LARDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 365
            MG   E + K   I R  QD   L SHQ+   A  +G+FD  I P  G         +  D  +R +T+LE LA L PA+D  NGT+TAG+S+ L+DGAS +L+ SE  A E GLP+ A +R+
Sbjct:  147 MGLTAEMLGKMHGISREQQDAFALASHQKAHKATIEGYFDSEILPMEGHDENGALTLVTHDEVIRPETTLEGLAALRPAFDPANGTVTAGSSSALSDGASAMLVMSEEKANELGLPIRAKVRS 269          
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADI_SHEAM (3-ketoacyl-CoA thiolase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=fadI PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.123e-16
Identity = 51/130 (39.23%), Postives = 73/130 (56.15%), Query Frame = -2
Query:   24 AMAKPRTGLSMGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDDLIS-----PYRG-LARDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 395
            A+A+  TGLSMG+  E+MAK   I R  QD +   SH      +  G   + +      PY   + +DNN+R  + L   A L P +DR++G++TA NSTPLTDGAS +LL SE  A   G   + Y+++
Sbjct:  174 AVAEYSTGLSMGQTAEQMAKTHGISRADQDAMAHRSHTLAAQTWASGVMKNEVMVAHVPPYNQFIEKDNNIRESSDLASYAKLRPVFDRKHGSVTAANSTPLTDGASALLLMSEGRAKALGYTPIGYIKS 303          
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: THIL_RHIME (Acetyl-CoA acetyltransferase OS=Rhizobium meliloti GN=phbA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 3.269e-16
Identity = 51/129 (39.53%), Postives = 75/129 (58.14%), Query Frame = -2
Query:   12 GLSMGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDDLISPY--------RGLARDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRTGETA 374
            G  MG   E +A++WQ+ R  QDE  L S  + +AA K G F D I P+          + +D  +R   +L+ +A L PA+D++ GT+TAGN++ L DGA+  LL +EA AA RG+  LA + +  TA
Sbjct:  155 GYHMGITAENVARKWQLTREEQDEFALASQNKAEAAQKAGRFADEIVPFVVKTRKGDVNVDQDEYIRHGATLDSIAKLRPAFDKE-GTVTAGNASGLNDGAAAALLMTEAEAARRGIQPLARIVSWATA 282          
BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADA_ERWCT (3-ketoacyl-CoA thiolase OS=Erwinia carotovora subsp. atroseptica GN=fadA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.119e-15
Identity = 52/122 (42.62%), Postives = 68/122 (55.74%), Query Frame = -2
Query:   27 MGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDDLISPYRGLARDNNL---------RADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLR 365
            MG   E +A+   I R  QD+    SHQR   A + G F   I P  G   D  L         R DT+++ LA L PA+D  NGT+TAG+S+ L+DGAS +L+ SE+ AA  GLPV A +R
Sbjct:  147 MGLTAEMLARMHNISREMQDQFAARSHQRAYHATQSGAFRHEIVPTAGHDADGALQRFDYDEVIRPDTTIDSLAALKPAFDPVNGTVTAGSSSALSDGASAMLIMSESRAASLGLPVRARIR 268          
The following BLAST results are available for this feature:
BLAST of EY674960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
FADI_SHESA3.159e-1940.773-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ... [more]
FADI_SHEON3.159e-1940.773-ketoacyl-CoA thiolase OS=Shewanella oneidensis G... [more]
FADI_VIBF15.388e-1943.853-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain... [more]
FADI_PSEA69.190e-1940.773-ketoacyl-CoA thiolase OS=Pseudoalteromonas atlan... [more]
FADI_COLP34.561e-1840.773-ketoacyl-CoA thiolase OS=Colwellia psychrerythra... [more]
FADA_VIBFM8.602e-1742.283-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain... [more]
FADA_VIBF18.602e-1742.283-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain... [more]
FADI_SHEAM1.123e-1639.233-ketoacyl-CoA thiolase OS=Shewanella amazonensis ... [more]
THIL_RHIME3.269e-1639.53Acetyl-CoA acetyltransferase OS=Rhizobium meliloti... [more]
FADA_ERWCT2.119e-1542.623-ketoacyl-CoA thiolase OS=Erwinia carotovora subs... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-003-H04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674960 ID=EY674960; Name=EY674960; organism=Citrus sinensis; type=EST; length=1041bp
AATTCACCGCTTGCGGTTTCACCGGTCCGCAAATAAGCCAAAACCGGCAA
GCCACGTTCGGCAGCCCATGCCTCGCTGGCCAGCAGCACCACCGAGGCGC
CATCGGTCAGGGGCGTGGAGTTGCCGGCGGTGAGCGTGCCGTTCTGGCGG
TCGTAGGCCGGGGACAGGCCGGCGAGTTTCTCCAGGCTGGTGTCGGCCCG
CAGGTTGTTGTCCCGGGCCAGGCCGCGATACGGGCTGATCAAATCATCGA
AGAAACCCTGCTTGTAGGCCGCGTCCAACCGTTGGTGGCTGGTGAGGGTC
AGTTCGTCCTGGGCCAGGCGCTTGATCTGCCAACGCTTGGCCATTTCTTC
ACAGTGTTCACCCATGGACAGGCCAGTACGCGGTTTCGCCATTGCGCGGC
AGCAGCGGCTTGAAGAACATCGACGGACGCACGCCCATCAAGGCCTTCAA
CTTGGCGCCGGTGCCCTTGGCGCGGTTGGCTGAAAGCAACGTGCGGCGCA
AGGACTCGTTGAAGCCCAAGGGGCCCGTCCGAGGTGGTGGTCGGAAACCG
CCCGGAATGCCCCCCTTTCATCTGCCCCAAGGCCATCTTGTTTCGCCCCC
AGCCACCCCGCCTTTCCCGGCCCGTGGCCGCAAGGTTTGTTTGCAGTCCT
AGGGCCGGGGGGTTTCGGGGAAAAAGCGGGGGGGGAAACCAGGCTTCCCC
CCCGGGGCCAGTTTGAATTCCCCCGGGAAATGTTTGTTCTCCCACCCCGG
GGGGAAAAATCCCCCCAGAGCCCAAGGCTCGGTGAAGGGGTGGAAGAGAG
ACCCACCCGGACCTTGGTAAGGGGTGCAAAACGAAAAAAAAACCAAGGTT
ATGAGTCCAGGAGGGCAAAAAAACAATCTATTAAGGGGGAAGGGCGAAAA
TATGGAAGGGAGGGGTACTCCTATGCCGAAATTATATCCAACCCTTATAA
GGGTGAGTTGGAAGATAGTGACCAACGGGGATGGAGAAAAACTAGATTTT
TTTTCCCGACTCTTTTCTGTATCCTTTGGTGAATTCGACTT
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