EY674957

Overview
NameEY674957
Unique NameEY674957
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1023
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674957 vs. ExPASy Swiss-Prot
Match: ABCC3_DICDI (ABC transporter C family member 3 OS=Dictyostelium discoideum GN=abcC3 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.134e-21
Identity = 55/148 (37.16%), Postives = 85/148 (57.43%), Query Frame = 1
Query:   37 MDNNIRFTLANTSSNRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVG 480
            +DNN +  L   + N+WL +RL+ L  ++ +    F  +     +     A+ +GL LSY L++T  L+    QA+  E  +N+VER+  YI  P EA  +VE +RP P WP  G+I F+++V+RYR  L PVL G+S  +   EK+G
Sbjct:  951 LDNNNKCYLTLQAMNQWLGLRLDLLANLVTFFACLFITI-----DRDTISAANVGLSLSYALSLTGNLNRATLQAADTETKMNSVERITHYIKGPVEALQIVEDHRPAPDWPPHGAITFDNLVMRYREGLDPVLKGISCEIKAKEKIG 1093          
BLAST of EY674957 vs. ExPASy Swiss-Prot
Match: ABCC8_CRICR (ATP-binding cassette transporter sub-family C member 8 OS=Cricetus cricetus GN=ABCC8 PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 1.640e-21
Identity = 43/148 (29.05%), Postives = 82/148 (55.41%), Query Frame = 1
Query:   40 DNNIRFTLANTSSNRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEA-PGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVG 480
            D+N   +L  T++NRWL + +E +G  ++ + A  ++  +   E     A  +GL L+Y L ++N L+ ++R  +  E  L AV+R+   +   +E+  G++  +  P  WP  G I+ +++ +RY   L PVL  ++  +SP +K+G
Sbjct: 1232 DSNNIASLFLTAANRWLEVCMEYIGACVVLIAAATSISNSLHRELS---AGLVGLGLTYALMVSNYLNWMVRNLADMEIQLGAVKRIHALLKTEAESYEGLLAPSLIPKNWPDQGKIQIQNLSVRYDSSLKPVLKHVNTLISPGQKIG 1376          

HSP 2 Score: 40.0466 bits (92), Expect = 1.640e-21
Identity = 22/53 (41.51%), Postives = 31/53 (58.49%), Query Frame = 2
Query:  470 RKWEIVGRTGAGKSSMLNALFQFVKLERGEKSIEGCDVSKFGLTDLRKVLNYL 628
            +K  I GRTG+GKSS   A F+ V +  G   I+G D++K  L  LR  L+ +
Sbjct: 1373 QKIGICGRTGSGKSSFSLAFFRMVDMFEGRIIIDGIDIAKLPLHTLRSRLSII 1425          

HSP 3 Score: 28.1054 bits (61), Expect = 1.640e-21
Identity = 12/16 (75.00%), Postives = 12/16 (75.00%), Query Frame = 3
Query:  633 QSPVLFPGNGRFNLDP 680
            Q PVLF G  RFNLDP
Sbjct: 1427 QDPVLFSGTIRFNLDP 1442          
BLAST of EY674957 vs. ExPASy Swiss-Prot
Match: L259_DROME (Probable multidrug resistance-associated protein lethal(2)03659 OS=Drosophila melanogaster GN=l(2)03659 PE=2 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 1.651e-21
Identity = 37/100 (37.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:  196 MGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVES---NRPPPAWPSSGSIKFEDVVLRYRP--ELPPVLHGLSFTVSPSEKVG 480
            +GL+++  + + +++   +RQ +  EN++ AVERV  Y  +  E  GM+E+    +PP  WP  G I F+++ LRY P  +   VL  LSF + P EKVG
Sbjct:  970 VGLVITQAMGLIDMVQWGVRQTAELENTMTAVERVVEYESI--EPEGMLEAPDDKKPPKTWPEQGEIIFKELNLRYTPNAKAENVLKSLSFVIQPREKVG 1067          

HSP 2 Score: 42.743 bits (99), Expect = 1.651e-21
Identity = 23/49 (46.94%), Postives = 33/49 (67.35%), Query Frame = 2
Query:  482 IVGRTGAGKSSMLNALFQFVKLERGEKSIEGCDVSKFGLTDLRKVLNYL 628
            IVGRTGAGKSS++NALF+ +    G   I+  D  + GL DLR+ ++ +
Sbjct: 1068 IVGRTGAGKSSLINALFR-LSYTDGSVLIDTRDTRQMGLHDLRRQISII 1115          

HSP 3 Score: 34.6538 bits (78), Expect = 1.651e-21
Identity = 14/20 (70.00%), Postives = 16/20 (80.00%), Query Frame = 3
Query:  630 PQSPVLFPGNGRFNLDPFNE 689
            PQ PVLF G  R+NLDPF+E
Sbjct: 1116 PQEPVLFSGTMRYNLDPFDE 1135          
BLAST of EY674957 vs. ExPASy Swiss-Prot
Match: MRP4_HUMAN (Multidrug resistance-associated protein 4 OS=Homo sapiens GN=ABCC4 PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 3.093e-21
Identity = 47/136 (34.56%), Postives = 74/136 (54.41%), Query Frame = 1
Query:   73 SSNRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVG 480
            +++RW  +RL+ +  + + ++A  +++     +     A  +GL LSY L +  +    +RQ++  EN + +VERV  Y DL  EAP   +  RPPPAWP  G I F++V   Y P  P VL  L+  +   EKVG
Sbjct:  943 TTSRWFAVRLDAICAMFVIIVAFGSLILAKTLD-----AGQVGLALSYALTLMGMFQWCVRQSAEVENMMISVERVIEYTDLEKEAPWEYQ-KRPPPAWPHEGVIIFDNVNFMYSPGGPLVLKHLTALIKSQEKVG 1072          

HSP 2 Score: 40.817 bits (94), Expect = 3.093e-21
Identity = 23/49 (46.94%), Postives = 35/49 (71.43%), Query Frame = 2
Query:  482 IVGRTGAGKSSMLNALFQFVKLERGEKSIEGCDVSKFGLTDLRKVLNYL 628
            IVGRTGAGKSS+++ALF+  + E G+  I+    ++ GL DLRK ++ +
Sbjct: 1073 IVGRTGAGKSSLISALFRLSEPE-GKIWIDKILTTEIGLHDLRKKMSII 1120          
BLAST of EY674957 vs. ExPASy Swiss-Prot
Match: NFT1_YEAST (ABC transporter NFT1 OS=Saccharomyces cerevisiae GN=NFT1 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.008e-20
Identity = 38/135 (28.15%), Postives = 70/135 (51.85%), Query Frame = 1
Query:   76 SNRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVG 480
            +  W+T R++ +G ++++  +   +M+    +     A   G+LLS   + T     +++  S  E  +++VER+  Y D+PSE+ G +    PP  WP +G ++ +++ LRY P     L  +SF V    KVG
Sbjct: 1190 ATEWITYRVDIIGTLVLFSSSVMIIMKASYLD-----AGLAGILLSNAFSFTETAQWIIKVFSSVELLMSSVERIKEYTDIPSESNGYIS---PPANWPQTGDVELKNLSLRYSPHSSKALDNVSFKVKAGTKVG 1316          

HSP 2 Score: 38.1206 bits (87), Expect = 1.008e-20
Identity = 19/47 (40.43%), Postives = 29/47 (61.70%), Query Frame = 2
Query:  482 IVGRTGAGKSSMLNALFQFVKLERGEKSIEGCDVSKFGLTDLRKVLN 622
            IVGRTGAGKSS++ A+++    E G  +I+  D+    L  LR  ++
Sbjct: 1317 IVGRTGAGKSSIIAAIYRLSDWENGTITIDNKDIKHIPLERLRNSIS 1363          

HSP 3 Score: 29.261 bits (64), Expect = 1.008e-20
Identity = 12/19 (63.16%), Postives = 13/19 (68.42%), Query Frame = 3
Query:  630 PQSPVLFPGNGRFNLDPFN 686
            PQ P LF G  R NLDPF+
Sbjct: 1366 PQDPTLFDGTVRSNLDPFD 1384          
BLAST of EY674957 vs. ExPASy Swiss-Prot
Match: ABCCF_DICDI (ABC transporter C family member 15 OS=Dictyostelium discoideum GN=abcC15 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.310e-20
Identity = 44/146 (30.14%), Postives = 75/146 (51.37%), Query Frame = 1
Query:   46 NIRFTLANTSSNRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAP-GMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVG 480
            N+R    N + +RW+ IR+E L  I++ + A F++  +    + +   + +G        IT  L+  +RQ    E+ +N+VERV +YI +P E      E  +    WPS G I+F++V +RYRP     L   S  ++  E++G
Sbjct: 1087 NLRVFFYNFAVSRWIGIRVEFLSAIVVLMSALFSIFNDNPGLSALGVTTALG--------ITFNLNWFMRQFGELESRINSVERVQSYISIPKEKETNEDEFIQTGFIWPSRGEIEFKNVEIRYRPNSIATLRNFSMKINAQERIG 1224          

HSP 2 Score: 36.965 bits (84), Expect = 1.310e-20
Identity = 17/43 (39.53%), Postives = 29/43 (67.44%), Query Frame = 2
Query:  482 IVGRTGAGKSSMLNALFQFVKLERGEKSIEGCDVSKFGLTDLR 610
            I+GR+G+GKS++  +LF+ ++   G   I+G D+S+  L  LR
Sbjct: 1225 IIGRSGSGKSTIGMSLFRMIECSSGSILIDGDDISQIDLKRLR 1267          

HSP 3 Score: 29.6462 bits (65), Expect = 1.310e-20
Identity = 11/20 (55.00%), Postives = 15/20 (75.00%), Query Frame = 3
Query:  630 PQSPVLFPGNGRFNLDPFNE 689
            PQ P +F G+ R NLDPF++
Sbjct: 1274 PQDPFIFSGSIRLNLDPFDQ 1293          
BLAST of EY674957 vs. ExPASy Swiss-Prot
Match: ABCC5_DICDI (ABC transporter C family member 5 OS=Dictyostelium discoideum GN=abcC5 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.638e-20
Identity = 58/159 (36.48%), Postives = 90/159 (56.60%), Query Frame = 1
Query:   25 NGKSMDNNIRFTLANTSSNRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYID-LPSEAPGMVESNRPPPAWPS------SGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVG 480
            N   +D+N +  L   + N+WL +RL  LG ++  L   F  +      + +A AS +GL +SYTL++T  L+   +Q +  E  +N++ER+  Y + +P E   ++ESNRPP  WPS      +  I FE+VV+ YR  LP VL G+SF +   EK+G
Sbjct: 1088 NQALLDDNNKCYLTLQAMNQWLGLRLSVLGNLITLLSCIFITVDR----SSIAIAS-VGLSISYTLSLTTNLNKATQQLAELETKMNSIERISYYTENVPQEPDQIIESNRPPMGWPSLTNSNHTPPIIFENVVMSYRQGLPAVLKGISFEIKAGEKIG 1241          
BLAST of EY674957 vs. ExPASy Swiss-Prot
Match: ABCCB_HUMAN (ATP-binding cassette transporter sub-family C member 11 OS=Homo sapiens GN=ABCC11 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.502e-19
Identity = 44/148 (29.73%), Postives = 68/148 (45.95%), Query Frame = 1
Query:   40 DNNIRFTLANTSSNRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDL-PSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVG 480
            D    + L   SS RW+ +RLE +  ++   +A F     G +    +F     + ++  L + +      R     E    AVER+  Y+ +  SEAP  +E    P  WP  G I F+D  ++YR   P VLHG++ T+   E VG
Sbjct: 1030 DAQNNYLLLFLSSTRWMALRLEIMTNLVTLAVALFVAF--GISSTPYSFKV---MAVNIVLQLASSFQATARIGLETEAQFTAVERILQYMKMCVSEAPLHMEGTSCPQGWPQHGEIIFQDYHMKYRDNTPTVLHGINLTIRGHEVVG 1172          

HSP 2 Score: 46.2098 bits (108), Expect = 3.502e-19
Identity = 24/49 (48.98%), Postives = 32/49 (65.31%), Query Frame = 2
Query:  482 IVGRTGAGKSSMLNALFQFVKLERGEKSIEGCDVSKFGLTDLRKVLNYL 628
            IVGRTG+GKSS+  ALF+ V+   G   I+G D+   GL DLR  L+ +
Sbjct: 1173 IVGRTGSGKSSLGMALFRLVEPMAGRILIDGVDICSIGLEDLRSKLSVI 1221          
BLAST of EY674957 vs. ExPASy Swiss-Prot
Match: AB6C_ARATH (ABC transporter C family member 6 OS=Arabidopsis thaliana GN=ABCC6 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 1.690e-18
Identity = 53/156 (33.97%), Postives = 78/156 (50.00%), Query Frame = 1
Query:   52 RFTLANTSSNRWLTIRLETLGGIMIWLIATFAVMQN----GRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKVGNSWKNWCRK 507
            R    +T +  WL  RLE        L++TFA   +      A   V   S  GL ++Y LN+  L + ++      EN + +VER+  Y ++PSE P ++E+ RP  +WPS G I   ++ +RY P LP VLHGL+ T     K G   +  C K
Sbjct: 1112 RLKFHSTGAMEWLCFRLE--------LLSTFAFASSLVILVSAPEGVINPSLAGLAITYALNLNTLQATLIWTLCDLENKMISVERMLQYTNIPSEPPLVIETTRPEKSWPSRGEITICNLQVRYGPHLPMVLHGLTCTFPGGLKTGIVGRTGCGK 1259          

HSP 2 Score: 30.0314 bits (66), Expect = 1.690e-18
Identity = 16/35 (45.71%), Postives = 18/35 (51.43%), Query Frame = 3
Query:  585 LSLG*RICEKFLII*PQSPVLFPGNGRFNLDPFNE 689
            LS+G       L I PQ P +F G  R NLDP  E
Sbjct: 1285 LSIGLHDLRSRLSIIPQDPTMFEGTIRSNLDPLEE 1319          
BLAST of EY674957 vs. ExPASy Swiss-Prot
Match: ABC4_SCHPO (ATP-binding cassette transporter abc4 OS=Schizosaccharomyces pombe GN=abc4 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 1.794e-18
Identity = 38/147 (25.85%), Postives = 71/147 (48.30%), Query Frame = 1
Query:   37 MDNNIRFTLANTSSNRWLTIRLETLGGIMIWLIATFAVMQNGRAENQVAFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVGTYIDLPSEAPGMVESNRPPPAWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSEKV 477
            +DN +R    + + NRW+ +R + + G++  +    A++Q   +   V F+    ++ S ++ +       +R  +  +  +N+ ERV  Y  LP E P    + + P  WP  G I F  V + Y    P +L  ++  ++PSEKV
Sbjct: 1103 LDNLVRLQSTSYNLNRWVAVRTDGISGLVGAIAGLIALLQKDLSPGVVGFSLNQAVIFSSSVLL------FVRSCNSLQAEMNSYERVLEYSKLPQE-PAPTIAGQVPATWPKEGDIVFNHVSVSYSAAGPTILKDVNLHINPSEKV 1242          

HSP 2 Score: 34.2686 bits (77), Expect = 1.794e-18
Identity = 18/52 (34.62%), Postives = 29/52 (55.77%), Query Frame = 2
Query:  473 KWEIVGRTGAGKSSMLNALFQFVKLERGEKSIEGCDVSKFGLTDLRKVLNYL 628
            K  +VGRTG+GKS++   L +F     GE  I G +     L  LR+ ++++
Sbjct: 1241 KVAVVGRTGSGKSTLGLTLLRFTHRISGEIYINGRETQSVNLNALRQRISFI 1292          

HSP 3 Score: 32.3426 bits (72), Expect = 1.794e-18
Identity = 13/20 (65.00%), Postives = 15/20 (75.00%), Query Frame = 3
Query:  630 PQSPVLFPGNGRFNLDPFNE 689
            PQ P+LF G  R NLDPF+E
Sbjct: 1293 PQDPILFSGTVRSNLDPFDE 1312          
The following BLAST results are available for this feature:
BLAST of EY674957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
ABCC3_DICDI1.134e-2137.16ABC transporter C family member 3 OS=Dictyostelium... [more]
ABCC8_CRICR1.640e-2129.05ATP-binding cassette transporter sub-family C memb... [more]
L259_DROME1.651e-2137.00Probable multidrug resistance-associated protein l... [more]
MRP4_HUMAN3.093e-2134.56Multidrug resistance-associated protein 4 OS=Homo ... [more]
NFT1_YEAST1.008e-2028.15ABC transporter NFT1 OS=Saccharomyces cerevisiae G... [more]
ABCCF_DICDI1.310e-2030.14ABC transporter C family member 15 OS=Dictyosteliu... [more]
ABCC5_DICDI1.638e-2036.48ABC transporter C family member 5 OS=Dictyostelium... [more]
ABCCB_HUMAN3.502e-1929.73ATP-binding cassette transporter sub-family C memb... [more]
AB6C_ARATH1.690e-1833.97ABC transporter C family member 6 OS=Arabidopsis t... [more]
ABC4_SCHPO1.794e-1825.85ATP-binding cassette transporter abc4 OS=Schizosac... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-003-G12-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674957 ID=EY674957; Name=EY674957; organism=Citrus sinensis; type=EST; length=1023bp
CCACGCGTCCGGATGGCCAAAATCAATGGAAAGTCGATGGATAATAACAT
CAGATTTACCCTTGCAAATACTAGTTCAAATCGTTGGCTCACCATCCGGT
TGGAAACACTAGGAGGCATCATGATTTGGTTGATAGCAACTTTTGCAGTC
ATGCAGAATGGAAGAGCAGAAAATCAGGTCGCATTTGCATCTACGATGGG
TTTACTTCTCAGTTATACTTTGAACATCACCAATCTGTTGAGTGGCGTAT
TGAGACAAGCAAGCAGGGCTGAGAATAGTTTAAATGCCGTTGAGCGTGTT
GGAACATATATAGATCTTCCTTCTGAAGCTCCGGGCATGGTAGAGAGTAA
TCGCCCCCCACCTGCTTGGCCTTCATCAGGATCAATAAAGTTTGAGGACG
TCGTCCTACGCTATAGGCCTGAACTTCCTCCAGTCTTGCATGGGTTATCA
TTCACAGTTTCCCCAAGTGAGAAAGTGGGAAATAGTTGGAAGAACTGGTG
CCGGAAAATCTAGCATGCTTAATGCTTTATTTCAATTTGTGAAACTGGAA
AGGGGGGAAAAATCCATTGAGGGTTGTGATGTCTCTAAGTTTGGGTTAAC
GGATTTGCGAAAAGTTCTTAATTATCTAACCACAATCACCAGTTCTTTTT
CCCGGAAATGGGAGGTTCAATCTTGATCCCTTTAATGAACCCCAGGGAGC
CTGAATTTTTGGGAAAGGTTTTAAAAAGGGCCACTCTGAAAGAAGTCTCT
CAGGGAAAAATTTCCTTTGGGTTGGGCCCCCAAAGGGCCACAAAAGGGGG
GGCAAAAATTTTTCAGGTGTTGGAAAAAAAAAAAAAATGGTTTAATTTCT
TGGGCCCCGAACCCCCGCGGCGCCAAAAAAAATAAAAAAAATTTTTGGTT
TTTCGGGGAAAGAAAAACAACCGTCCGGCCCCGGGTTGTTTAATGTTCGG
AGAGCAAAAAGAGCCGTCCTCTTTTTCCCCCACAAAAAAAACCACCCCAC
CCCCGGGGAAGAAGAAAAAAAAA
back to top