EY674900

Overview
NameEY674900
Unique NameEY674900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length999
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674900 vs. ExPASy Swiss-Prot
Match: XTH29_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 29 OS=Arabidopsis thaliana GN=XTH29 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 5.811e-31
Identity = 74/188 (39.36%), Postives = 109/188 (57.98%), Query Frame = 2
Query:  158 PATFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRD--ELDFEFLGNRTGQPYTVQTNIYANGKGDR--EQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIR--VYKTRGRAPFPMNQPRGVDSTLWGTKEWATKGGQKKINW 703
            P  F E     + + +L +    R+++L+LD+ +G GF S   Y  G  S  IKL    +AG V AFY ++    V+D  ELD EFLGN  G+P+  QTN+Y NG  +R  E+R  LWFDP+ ++H Y+ILW    I+F+VDDVPIR  + K      +P  +P  + +T+W    WAT GG+  +++
Sbjct:   37 PIFFDEGLSHLFGEGNLIRSPDDRSVRLLLDKYTGSGFISSSMYQHGFFSSLIKLPGAYTAGIVVAFYTSNGDVFVKDHDELDIEFLGNLEGKPWRFQTNMYGNGSTNRGREERYRLWFDPSKEFHRYSILWTPTKIIFWVDDVPIREILRKEEMNGDYP-QKPMSLYATIWDASSWATSGGKFGVDY 223          
BLAST of EY674900 vs. ExPASy Swiss-Prot
Match: XTH11_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 11 OS=Arabidopsis thaliana GN=XTH11 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.750e-27
Identity = 66/155 (42.58%), Postives = 90/155 (58.06%), Query Frame = 2
Query:  164 TFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKTRGRAPFPMNQ 628
            T+  ++  TW    L  I     +QL LD+NSG GF S+  Y  G  +++IK     S G +T+FY+ S +    DEL F+ LG + G PY + TN+Y  G+G ++QR  LWFDP  DYH Y+ LWN + +VFYVDD PIRVY       +P  Q
Sbjct:   23 TWGNNYYQTWGHQAL-VINKTSELQLTLDKNSGSGFESQLIYGSGYFNVRIKAPQTTSTGVITSFYLISRSSR-HDELCFQILG-KNGPPYLLNTNMYLYGEGGKDQRFRLWFDPTKDYHSYSFLWNPNQLVFYVDDTPIRVYSKNPDVYYPSVQ 174          
BLAST of EY674900 vs. ExPASy Swiss-Prot
Match: CRR1_YEAST (Probable glycosidase CRR1 OS=Saccharomyces cerevisiae GN=CRR1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 6.041e-12
Identity = 49/136 (36.03%), Postives = 70/136 (51.47%), Query Frame = 2
Query:  170 LEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGD--REQRVNLWFDPAADYHLYTILWNHHHIVFYVD 571
            LEDF  T S     +   G  +  +  + +G    S R +L+G+ S+++K     S G VTAF +   T  + DE+DFE+LG   G   T Q+N Y+ G  D  R QR  +  D  A YH Y I W+   I++YVD
Sbjct:  148 LEDFDFTHSGYTSIEASSGNIVLAMPKKTTGSLITSTRSFLYGKASVRMKTAR--SRGVVTAFDL---TSAIGDEIDFEWLG---GDLMTAQSNYYSQGHLDYTRMQRFPVGADTWATYHTYEIDWDPDRIIWYVD 275          
BLAST of EY674900 vs. ExPASy Swiss-Prot
Match: GUB_CLOTH (Beta-glucanase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=licB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.723e-11
Identity = 56/174 (32.18%), Postives = 78/174 (44.83%), Query Frame = 2
Query:  179 FKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKR-----QYLFGRVSMKIKLVPGDSAGTVTAF--YMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKTRGRAPFPMNQPRGVDSTLW---GTKEW 670
            F   W  + +     G+ I L LD+  G  +  K      +  FG    ++++    + G V++F  Y   +  N  DE+D EFLG  T +   VQ N Y NG G  E   NL FD + D+H Y   W   +I FYVD    +VY  RG    P+  P  +   LW   G  EW
Sbjct:   60 FNCVWKPSQVT-FSNGKMI-LTLDREYGGSYPYKSGEYRTKSFFGYGYYEVRMKAAKNVGIVSSFFTYTGPSDNNPWDEIDIEFLGKDTTK---VQFNWYKNGVGGNEYLHNLGFDASQDFHTYGFEWRPDYIDFYVDGK--KVY--RGTRNIPVT-PGKIMMNLWPGIGVDEW 223          
The following BLAST results are available for this feature:
BLAST of EY674900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
XTH29_ARATH5.811e-3139.36Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH11_ARATH1.750e-2742.58Probable xyloglucan endotransglucosylase/hydrolase... [more]
CRR1_YEAST6.041e-1236.03Probable glycosidase CRR1 OS=Saccharomyces cerevis... [more]
GUB_CLOTH8.723e-1132.18Beta-glucanase OS=Clostridium thermocellum (strain... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-002-H04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674900 ID=EY674900; Name=EY674900; organism=Citrus sinensis; type=EST; length=999bp
CATAACCACAACATATAATTAAAGATCTCTTTCTAATTAGTAACAGATAA
TATTTTATTGTACGGCTTGTTTTACAGCTATGGCTATCCTAAGAAATGCA
ATAGCATTATTTGTGTTGCTTTACTGTCTTGTATCCTGCTCTTGCGTTTT
AGGGCGACCGGCTACTTTTCTTGAGGATTTTAAAGTCACATGGTCCGATG
CCCATCTCAGGCAAATCGAGGGAGGGAGGGCCATCCAGCTAGTTCTAGAC
CAAAATTCAGGATGTGGGTTTGCCTCCAAAAGGCAGTACTTGTTCGGGCG
TGTAAGCATGAAGATCAAGCTCGTTCCTGGAGACTCTGCTGGAACTGTCA
CTGCATTTTATATGAATTCCAACACCGAAAATGTGAGAGACGAGCTTGAT
TTTGAGTTCCTGGGAAACCGAACGGGTCAGCCTTACACGGTCCAGACCAA
TATCTATGCAAATGGAAAAGGCGATAGAGAACAGAGAGTGAACCTCTGGT
TTGACCCTGCTGCAGATTATCACCTTTACACTATTCTCTGGAACCATCAC
CATATTGTCTTCTATGTGGATGATGTGCCCATCAGGGTTTACAAAACCCG
TGGAAGGGCTCCATTTCCCATGAACCAACCCAGGGGGGTGGATTCAACCC
TGTGGGGAACCAAAGAATGGGCAACAAAAGGGGGGCAAAAAAAAATAAAT
TGGGAACAAAACCTCCTTTTTTTGCCTTATTAACAAAAAATTTTGAAATT
TAAGGGGGGCCCCCCTTTTCCCGGGAACAACAAAATGTGGGCCCTCAAAA
CCCCGGGTAAACGGGGTGGGGGGGGGAAAAAAAATTTTTTTCCCCCCCCC
CCCCCCCCCCCGGGGAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGTTTC
CCCCCCCCCCCCCCCATTTAATATTTTTTTAAATATATTTTGGGCCACAG
AAAAAAAAAAAATAAAAAAAAAAAAACCACCCCCCACACCACCCACCCC
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