EY674894

Overview
NameEY674894
Unique NameEY674894
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1081
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674894 vs. ExPASy Swiss-Prot
Match: TRPC_PROM4 (Indole-3-glycerol phosphate synthase OS=Prochlorococcus marinus (strain MIT 9211) GN=trpC PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 4.975e-39
Identity = 83/165 (50.30%), Postives = 109/165 (66.06%), Query Frame = 1
Query:   70 AEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQK 564
            AE+KKASPS+G++RE+FDP+EIA +Y+ GGA CLS+LTD+ +F+G FE L  VR   V  PLLCKEFI+  +QIY AR  GADAVLLIAA+L D D+ Y+ K+   LGLT LVEVHD  E+ RV                 TF  D+  TK++++  +  I  Q+
Sbjct:   83 AEIKKASPSKGVIRENFDPIEIALAYKLGGATCLSVLTDKSFFQGGFEVLVQVRKT-VDLPLLCKEFIIQPYQIYQARVAGADAVLLIAAILSDQDLLYLRKVAISLGLTILVEVHDSNELKRVLDLEGFPLVGINNRDLKTFNTDLRTTKEVVKEHKKRISEQE 246          
BLAST of EY674894 vs. ExPASy Swiss-Prot
Match: TRPC_GLOVI (Indole-3-glycerol phosphate synthase OS=Gloeobacter violaceus GN=trpC PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 4.975e-39
Identity = 86/160 (53.75%), Postives = 107/160 (66.88%), Query Frame = 1
Query:   70 AEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGE 549
            AEVKKASPSRG+LR DFDPV +A++Y +GGA  +S+LTDE +F+GSF NL  +R   V  PLLCKEFI+  +QIY AR  GADAVLLIAA+L D D+ Y+ ++   LG+ ALVEVHD  E+DRV                  FEV +  T+ LL  ERGE
Sbjct:   83 AEVKKASPSRGVLRSDFDPVALAQAYTRGGADAISVLTDEAFFQGSFTNLSRIREQ-VPLPLLCKEFILGPYQIYLARAHGADAVLLIAAILSDTDLAYLMRVADQLGMAALVEVHDLEELDRVLALEGVALVGINNRNLLDFEVHLETTETLLT-ERGE 240          
BLAST of EY674894 vs. ExPASy Swiss-Prot
Match: TRPC_SYNS9 (Indole-3-glycerol phosphate synthase OS=Synechococcus sp. (strain CC9902) GN=trpC PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 6.498e-39
Identity = 80/161 (49.69%), Postives = 111/161 (68.94%), Query Frame = 1
Query:   70 AEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEI 552
            AEVKKASPS+G++R+DFDPV IA++Y  GGA+CLS+LTD+++F+G F+ L  VR   V  PLLCKEF++  +Q++ AR  GADAVLLIAA+L D D+RY+ K+ + LGL  LVEVHD +E++RV                 TFE D++ T+ L+   R  +
Sbjct:   83 AEVKKASPSKGVIRDDFDPVAIAKAYAAGGASCLSVLTDKQFFQGGFDVLVQVRET-VDLPLLCKEFVLSPYQLFQARAAGADAVLLIAAILTDQDLRYLNKVAQSLGLDVLVEVHDAKELERVLAIGGFSLIGINNRDLATFETDLATTEVLVNQFRDRL 242          
BLAST of EY674894 vs. ExPASy Swiss-Prot
Match: TRPC_SYNPW (Indole-3-glycerol phosphate synthase OS=Synechococcus sp. (strain WH7803) GN=trpC PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 2.469e-38
Identity = 81/155 (52.26%), Postives = 105/155 (67.74%), Query Frame = 1
Query:   70 AEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLE 534
            AEVKKASPS+G++REDFDPV IA++Y  GGA+CLS+LTD  +F+G F+ L AVR A V  PLLCK+FI+   Q+Y AR  GADA LLIAA+L D D+ Y+ K+   LGLT LVEVHD  EM+R+                 +FE D++ T+ L +
Sbjct:   83 AEVKKASPSKGVIREDFDPVAIAKAYAAGGASCLSVLTDRTFFQGGFDVLVAVREA-VDLPLLCKDFILSPHQLYQARAAGADAALLIAAILTDQDLAYLQKVAATLGLTVLVEVHDAAEMERILTLGGFPLIGINNRDLTSFETDLATTEALTQ 236          
BLAST of EY674894 vs. ExPASy Swiss-Prot
Match: TRPC_CYAP4 (Indole-3-glycerol phosphate synthase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=trpC PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 2.469e-38
Identity = 84/154 (54.55%), Postives = 105/154 (68.18%), Query Frame = 1
Query:   70 AEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLL 531
            AEVKKASPS+G+LRE+FDPV IA++Y   GAACLS+LTDEK+F+GSF  L  +R A V  PLLCKEFI+  +Q+Y AR++GADAVLLIAA+L D D++Y  KI   LG+ AL+EVH   E+DRV                  F VD+  T  LL
Sbjct:   82 AEVKKASPSKGVLREEFDPVAIAQAYATAGAACLSVLTDEKFFQGSFTYLNQIRQA-VHLPLLCKEFIIYPYQMYLARSQGADAVLLIAAILSDQDLQYFLKIATSLGMAALIEVHTLTELDRVLNLEGVSLVGINNRNLENFTVDLQTTCDLL 234          
BLAST of EY674894 vs. ExPASy Swiss-Prot
Match: TRPC_SYNPX (Indole-3-glycerol phosphate synthase OS=Synechococcus sp. (strain WH8102) GN=trpC PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 3.225e-38
Identity = 81/155 (52.26%), Postives = 106/155 (68.39%), Query Frame = 1
Query:   70 AEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLE 534
            AEVKKASPS+G++REDFDPV IA +Y  GGA CLS+LTD+ +F+G F+ L  VR A V  PLLCKEF++  +Q++ AR  GADAVLLIAA+L D D++Y+ K    LGL  LVEVHD  E++RV                 +FE D+S T++L+E
Sbjct:   83 AEVKKASPSKGVIREDFDPVAIAEAYAAGGARCLSVLTDKTFFQGGFDVLVEVRQA-VDLPLLCKEFVLSPYQLFQARAAGADAVLLIAAILTDQDLQYLKKAAAALGLDVLVEVHDAAELERVLNLGGFPLIGINNRDLTSFETDLSTTEQLME 236          
BLAST of EY674894 vs. ExPASy Swiss-Prot
Match: TRPC_SYNR3 (Indole-3-glycerol phosphate synthase OS=Synechococcus sp. (strain RCC307) GN=trpC PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 7.319e-38
Identity = 82/164 (50.00%), Postives = 110/164 (67.07%), Query Frame = 1
Query:   70 AEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQ 561
            AEVKKASPS+G++REDFDP  IA++Y +GGA+CLS+LTD+++F+G FE L  VR   V  PLLCKEFI+  +Q+Y AR  GADAVLLIAA+L D DI Y+ K+ + LGL  L+EVHD  E++R                  +F+ D++ T + L    GE +RQ
Sbjct:   83 AEVKKASPSKGVIREDFDPEAIAKAYAEGGASCLSVLTDKRFFQGGFEVLVQVRQV-VDLPLLCKEFILSPYQLYQARAAGADAVLLIAAILTDQDISYLLKVARSLGLQVLLEVHDAAELERALGFEGVQLIGINNRDLTSFDTDLATT-ETLTATYGEQLRQ 244          

HSP 2 Score: 21.557 bits (44), Expect = 7.319e-38
Identity = 9/15 (60.00%), Postives = 11/15 (73.33%), Query Frame = 2
Query:  593 GLFTPDDIAYVQEAG 637
            GLF+ DD+  VQ AG
Sbjct:  254 GLFSRDDLDRVQSAG 268          
BLAST of EY674894 vs. ExPASy Swiss-Prot
Match: TRPC_SYNS3 (Indole-3-glycerol phosphate synthase OS=Synechococcus sp. (strain CC9311) GN=trpC PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 9.382e-38
Identity = 81/165 (49.09%), Postives = 107/165 (64.85%), Query Frame = 1
Query:   70 AEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQK 564
            AEVKKASPS+G++REDFDPV IA++Y  GGA+CLS+LTD+ +F+G F  L  VR A V  PLLCK+FI+  +Q+Y AR  GADA LLIAA+L D D+ Y  K+   LGLT LVEVHD  E+ RV                 +FE D++ T+ L      +++ Q+
Sbjct:   83 AEVKKASPSKGVIREDFDPVAIAKAYASGGASCLSVLTDKAFFQGGFNVLIEVREA-VDLPLLCKDFILSPYQLYQARAAGADAALLIAAILTDQDLAYFAKVAAALGLTVLVEVHDAEELQRVLALGGFPLIGINNRDLTSFETDLATTETLTAQFAEQLLEQQ 246          
BLAST of EY674894 vs. ExPASy Swiss-Prot
Match: TRPC_PROM5 (Indole-3-glycerol phosphate synthase OS=Prochlorococcus marinus (strain MIT 9515) GN=trpC PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 2.090e-37
Identity = 77/154 (50.00%), Postives = 109/154 (70.78%), Query Frame = 1
Query:   70 AEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLL 531
            AE+KKASPS+G++REDF P EIA SYE+ GA+C+S+LTD+++F+GS+E L+ VR A    PLLCK+FI+ A+QIY AR  GADA+LLIAA+L D D+ Y+ KI   LG++ LVEVHDE+E+ R+                 TF+ D+  + +++
Sbjct:   83 AEIKKASPSKGVIREDFRPNEIAFSYERSGASCISVLTDKRFFQGSYEILQDVRGA-TNLPLLCKDFIISAYQIYKARVSGADAILLIAAILSDDDLFYLKKIADNLGMSVLVEVHDEQELKRILSFKLFDLIGINNRDLKTFKTDLKTSIEMM 235          
BLAST of EY674894 vs. ExPASy Swiss-Prot
Match: TRPC_PROM3 (Indole-3-glycerol phosphate synthase OS=Prochlorococcus marinus (strain MIT 9303) GN=trpC PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 6.081e-37
Identity = 79/153 (51.63%), Postives = 102/153 (66.67%), Query Frame = 1
Query:   70 AEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKL 528
            AEVKKASPS+G++R DFDPV IA +Y +GGA+CLS+LTD+ +F+G FE L  VR   V  PLLCK+FI+  +Q+Y AR  GADA LLI A+L D D+ Y++K+   LGLT LVEVHD  E++RV                 TFE D+  T+ L
Sbjct:   83 AEVKKASPSQGVIRADFDPVLIANAYAEGGASCLSVLTDKSFFQGGFEVLVEVRQT-VGLPLLCKDFILTPYQLYQARAAGADAALLIMAILSDQDLTYLSKVANSLGLTVLVEVHDAEELERVLNLGGFPLIGINNRDLTTFETDLETTETL 234          
The following BLAST results are available for this feature:
BLAST of EY674894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 395
Match NameE-valueIdentityDescription
TRPC_PROM44.975e-3950.30Indole-3-glycerol phosphate synthase OS=Prochloroc... [more]
TRPC_GLOVI4.975e-3953.75Indole-3-glycerol phosphate synthase OS=Gloeobacte... [more]
TRPC_SYNS96.498e-3949.69Indole-3-glycerol phosphate synthase OS=Synechococ... [more]
TRPC_SYNPW2.469e-3852.26Indole-3-glycerol phosphate synthase OS=Synechococ... [more]
TRPC_CYAP42.469e-3854.55Indole-3-glycerol phosphate synthase OS=Cyanothece... [more]
TRPC_SYNPX3.225e-3852.26Indole-3-glycerol phosphate synthase OS=Synechococ... [more]
TRPC_SYNR37.319e-3850.00Indole-3-glycerol phosphate synthase OS=Synechococ... [more]
TRPC_SYNS39.382e-3849.09Indole-3-glycerol phosphate synthase OS=Synechococ... [more]
TRPC_PROM52.090e-3750.00Indole-3-glycerol phosphate synthase OS=Prochloroc... [more]
TRPC_PROM36.081e-3751.63Indole-3-glycerol phosphate synthase OS=Prochloroc... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-002-G08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674894 ID=EY674894; Name=EY674894; organism=Citrus sinensis; type=EST; length=1081bp
CGGGCGGGTACGGGTCCGGGAATTCCGGGTCGACCCCGCGTCCGCGGACG
CGTGGGCGGCCCCTTGGGTGCTGAAGTAAAGAAGGCTTCTCCGAGCAGAG
GAATCCTAAGAGAGGATTTTGATCCAGTTGAAATTGCCCGATCTTATGAG
AAAGGTGGAGCAGCATGTCTCAGTATTTTGACAGATGAAAAGTATTTTAA
GGGAAGCTTTGAAAACTTGGAGGCTGTAAGGAGTGCAGGAGTGAAGTGCC
CCCTATTGTGCAAAGAATTCATTGTAGACGCATGGCAGATCTACTATGCC
CGAACTAAAGGTGCAGATGCAGTTCTTCTGATCGCTGCTGTTTTGCCTGA
TCTTGATATCAGATACATGACTAAGATCTGCAAGATGCTTGGTTTGACTG
CACTTGTTGAGGTTCATGACGAGAGGGAAATGGATCGTGTTCTTGGAATT
GAGGGGATTGAACTTATTGGTATTAACAATCGGAACCTTGAGACGTTTGA
GGTTGATATTAGTAACACAAAGAAACTTCTTGAAGGAGAGCGTGGTGAAA
TAATCCGTCAAAAGAAACATAATTGTGGTTGGGTGAATCTGGGGCTTATT
TACTCCCGATGATATCGCATACGTACAAGAAGCTGGGTGTTAAAGCTGTT
CTGGGTGGGGGAGTCCAATAGGGGAAACAAGACGACCCCCGGGAAGGGAA
ATAACGGGAATTTTTTGGAAAAAAAAAATTTCCTGGAATGACCCCCCTAT
TTTTTTGGGTTTCCCACAAAAGGGTCCGGGGGGAAAGGTATTTTCAAATA
GGAAAAAAAAAAAAAAAGCCCCCCTTTTTGGTTTCCAATAAAATATAAAT
TAAAGCCCCCCCCCCCCTTAATGGTGTTTTCTTATACGCCCCTTTTTTTC
CCCTTTTTTCCCTTTTTTGTATTTTTTTGGGATAACTTTTTCCCCCAAAA
GGGGAGAAAAGGGGAAAAAAAAATGTGGGTTTTTGTGGAATCCCTGAAAA
AAGGGAAATGAGGGGGGGTAATGTTGGGTTGGTGGTGGGGGGGAGATTAG
GAAGAAAAATAAATATAATTAAAAAAAAAAA
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