EY674894

Overview
NameEY674894
Unique NameEY674894
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1081
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674894 vs. ExPASy Swiss-Prot
Match: TRPC_CHRVO (Indole-3-glycerol phosphate synthase OS=Chromobacterium violaceum GN=trpC PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 4.667e-29
Identity = 73/154 (47.40%), Postives = 93/154 (60.39%), Query Frame = 1
Query:   70 AEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLL 531
            AEVKKASPS+G++REDF P  IA SY   GAACLS+LTD +YF+G    LE  R+A    P L K+FIVD +Q+Y AR  GAD +LLIAA L    ++ +  +   LG+  LVEVH+E E+D                   TFEV ++ T KLL
Sbjct:   58 AEVKKASPSKGVIREDFQPAAIAESYAAHGAACLSVLTDRQYFQGDARYLEDARAA-CHLPALRKDFIVDEYQVYEARAMGADCILLIAAALELPKMKALEALANELGMAVLVEVHNEEELD-AALQLKTELVGVNNRNLRTFEVSLATTLKLL 209          
BLAST of EY674894 vs. ExPASy Swiss-Prot
Match: TRPC_BURVG (Indole-3-glycerol phosphate synthase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=trpC PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 4.667e-29
Identity = 76/155 (49.03%), Postives = 95/155 (61.29%), Query Frame = 1
Query:   70 AEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLE 534
            AEVKKASPS+G+LRE F P +IARSY   GAACLS+LTDE++F+GS   LE  R+A    P+L K+FIVDA+QI  AR  GADA+LLIAA L    ++ +      LGL  LVEVHD  EM++                  TFE  I  T  +L+
Sbjct:   57 AEVKKASPSKGVLREHFVPADIARSYATHGAACLSVLTDEQFFQGSVRYLEEARAA-CTLPVLRKDFIVDAYQILEARAMGADAILLIAAALDTPLMQELEAYAHSLGLAVLVEVHDRNEMEQA-LTLKTPLVGINNRNLRTFETTIQTTLDMLD 209          
BLAST of EY674894 vs. ExPASy Swiss-Prot
Match: TRPC_PSEPF (Indole-3-glycerol phosphate synthase OS=Pseudomonas fluorescens (strain Pf0-1) GN=trpC PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 6.096e-29
Identity = 68/154 (44.16%), Postives = 95/154 (61.69%), Query Frame = 1
Query:   70 AEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLL 531
            AE+KKASPS+G++RE+F P +IA+SYEKGGA CLS+LTD  YF+G+   L+  R A    P++ K+F++D +QI  AR  GAD VLLI + L D+ +  +  + K +GL  LVEVHD  E++R                  TF+V +  T  LL
Sbjct:   60 AEIKKASPSKGVIRENFVPADIAKSYEKGGATCLSVLTDIDYFQGADAYLQQARVA-CSLPVIRKDFMIDPYQIVEARALGADCVLLIVSALDDVKMAELASVAKDVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFDVSLETTLDLL 212          
BLAST of EY674894 vs. ExPASy Swiss-Prot
Match: TRPC_BORPE (Indole-3-glycerol phosphate synthase OS=Bordetella pertussis GN=trpC PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 6.096e-29
Identity = 66/122 (54.10%), Postives = 86/122 (70.49%), Query Frame = 1
Query:   70 AEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMD 435
            AE+KKASPS+G+LRE+FDP EIA SY   GAACLS+LTD ++F+GS +NL   R+A    P+L K+FI+D +QI  AR  GAD VLLI A L    +R +  +   LG+  LVEVHD +E+D
Sbjct:   58 AEIKKASPSKGVLRENFDPAEIAASYAMHGAACLSVLTDVQFFQGSHDNLRRARAA-CSLPVLRKDFIIDPYQIISARAMGADCVLLIVATLAPAQLRDLETLAIDLGMDVLVEVHDAKELD 178          
BLAST of EY674894 vs. ExPASy Swiss-Prot
Match: TRPC_BORPA (Indole-3-glycerol phosphate synthase OS=Bordetella parapertussis GN=trpC PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 6.096e-29
Identity = 66/122 (54.10%), Postives = 86/122 (70.49%), Query Frame = 1
Query:   70 AEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMD 435
            AE+KKASPS+G+LRE+FDP EIA SY   GAACLS+LTD ++F+GS +NL   R+A    P+L K+FI+D +QI  AR  GAD VLLI A L    +R +  +   LG+  LVEVHD +E+D
Sbjct:   58 AEIKKASPSKGVLRENFDPAEIAASYAMHGAACLSVLTDVQFFQGSHDNLRRARAA-CSLPVLRKDFIIDPYQIISARAMGADCVLLIVAALAPAQLRDLETLAIDLGMDVLVEVHDAKELD 178          
BLAST of EY674894 vs. ExPASy Swiss-Prot
Match: TRPC_BORBR (Indole-3-glycerol phosphate synthase OS=Bordetella bronchiseptica GN=trpC PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 6.096e-29
Identity = 66/122 (54.10%), Postives = 86/122 (70.49%), Query Frame = 1
Query:   70 AEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMD 435
            AE+KKASPS+G+LRE+FDP EIA SY   GAACLS+LTD ++F+GS +NL   R+A    P+L K+FI+D +QI  AR  GAD VLLI A L    +R +  +   LG+  LVEVHD +E+D
Sbjct:   58 AEIKKASPSKGVLRENFDPAEIAASYAMHGAACLSVLTDVQFFQGSHDNLRRARAA-CSLPVLRKDFIIDPYQIISARAMGADCVLLIVAALAPAQLRDLETLAIDLGMDVLVEVHDAKELD 178          
BLAST of EY674894 vs. ExPASy Swiss-Prot
Match: TRPC_PSEE4 (Indole-3-glycerol phosphate synthase OS=Pseudomonas entomophila (strain L48) GN=trpC PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 7.961e-29
Identity = 70/154 (45.45%), Postives = 95/154 (61.69%), Query Frame = 1
Query:   70 AEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLL 531
            AE+KKASPS+G++RE+F P +IA SYEKGGA CLS+LTD  YF+G+   L+  R+A V  P++ K+F+VD +QI  AR  GAD VLLI + L D+ +  +    K +GL  LVEVHD  E++R                  TF+V +  T  LL
Sbjct:   60 AEIKKASPSKGVIRENFVPADIAVSYEKGGATCLSVLTDVDYFQGADVYLQQARAA-VSLPVIRKDFMVDPYQIVEARALGADCVLLIVSALDDVKMAELAATAKDVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFDVSLETTLDLL 212          
BLAST of EY674894 vs. ExPASy Swiss-Prot
Match: TRPC_BURS3 (Indole-3-glycerol phosphate synthase OS=Burkholderia sp. (strain 383) GN=trpC PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 7.961e-29
Identity = 74/155 (47.74%), Postives = 96/155 (61.94%), Query Frame = 1
Query:   70 AEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLE 534
            +E+KKASPS+G+LRE F P +IARSY + GAACLS+LTDE++F+GS   LE  R+A    P+L K+FIVDA+QI  AR  GADA+LLIAA L    ++ +      LGL  LVEVHD  EM++                  TFE  I  T  +L+
Sbjct:   57 SEIKKASPSKGVLREHFVPADIARSYAEHGAACLSVLTDEQFFQGSVRYLEEARAA-CTLPVLRKDFIVDAYQIMEARAMGADAILLIAAALDTPLMQDLEAYAHSLGLAVLVEVHDRNEMEQA-LTLKTPLLGINNRNLRTFETSIQTTLDMLD 209          
BLAST of EY674894 vs. ExPASy Swiss-Prot
Match: TRPC_BURPP (Indole-3-glycerol phosphate synthase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=trpC PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 7.961e-29
Identity = 69/121 (57.02%), Postives = 86/121 (71.07%), Query Frame = 1
Query:   70 AEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREM 432
            +EVKKASPS+G+LRE F P EIARSYEK GAACLS+LTD ++F+GS   LE  R+A    P+L K+FIVD +QI  AR  GADA+LLIAA L    ++ +  +   LGL  LVEVHD  E+
Sbjct:   57 SEVKKASPSKGVLREHFVPAEIARSYEKHGAACLSVLTDVQFFQGSVAYLEEARAA-CNLPVLRKDFIVDPYQIVEARAMGADAILLIAAALETSQMQDLEALAHSLGLAVLVEVHDHDEL 176          
BLAST of EY674894 vs. ExPASy Swiss-Prot
Match: TRPC_BURCM (Indole-3-glycerol phosphate synthase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=trpC PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 7.961e-29
Identity = 76/155 (49.03%), Postives = 95/155 (61.29%), Query Frame = 1
Query:   70 AEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLE 534
            AEVKKASPS+G+LRE F P +IARSY   GAACLS+LTDE++F+GS   LE  R+A    P+L K+FIVDA+QI  AR  GADA+LLIAA L    ++ +      LGL  LVEVHD  EM++                  TFE  I  T  +L+
Sbjct:   57 AEVKKASPSKGVLREHFVPADIARSYAAHGAACLSVLTDEQFFQGSVRYLEEARAA-CTLPVLRKDFIVDAYQILEARAMGADAILLIAAALDTPLMQDLEAYAHSLGLAVLVEVHDRDEMEQA-LTLKTPLLGINNRNLRTFETSIQTTLDMLD 209          
The following BLAST results are available for this feature:
BLAST of EY674894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 395
Match NameE-valueIdentityDescription
TRPC_CHRVO4.667e-2947.40Indole-3-glycerol phosphate synthase OS=Chromobact... [more]
TRPC_BURVG4.667e-2949.03Indole-3-glycerol phosphate synthase OS=Burkholder... [more]
TRPC_PSEPF6.096e-2944.16Indole-3-glycerol phosphate synthase OS=Pseudomona... [more]
TRPC_BORPE6.096e-2954.10Indole-3-glycerol phosphate synthase OS=Bordetella... [more]
TRPC_BORPA6.096e-2954.10Indole-3-glycerol phosphate synthase OS=Bordetella... [more]
TRPC_BORBR6.096e-2954.10Indole-3-glycerol phosphate synthase OS=Bordetella... [more]
TRPC_PSEE47.961e-2945.45Indole-3-glycerol phosphate synthase OS=Pseudomona... [more]
TRPC_BURS37.961e-2947.74Indole-3-glycerol phosphate synthase OS=Burkholder... [more]
TRPC_BURPP7.961e-2957.02Indole-3-glycerol phosphate synthase OS=Burkholder... [more]
TRPC_BURCM7.961e-2949.03Indole-3-glycerol phosphate synthase OS=Burkholder... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-002-G08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674894 ID=EY674894; Name=EY674894; organism=Citrus sinensis; type=EST; length=1081bp
CGGGCGGGTACGGGTCCGGGAATTCCGGGTCGACCCCGCGTCCGCGGACG
CGTGGGCGGCCCCTTGGGTGCTGAAGTAAAGAAGGCTTCTCCGAGCAGAG
GAATCCTAAGAGAGGATTTTGATCCAGTTGAAATTGCCCGATCTTATGAG
AAAGGTGGAGCAGCATGTCTCAGTATTTTGACAGATGAAAAGTATTTTAA
GGGAAGCTTTGAAAACTTGGAGGCTGTAAGGAGTGCAGGAGTGAAGTGCC
CCCTATTGTGCAAAGAATTCATTGTAGACGCATGGCAGATCTACTATGCC
CGAACTAAAGGTGCAGATGCAGTTCTTCTGATCGCTGCTGTTTTGCCTGA
TCTTGATATCAGATACATGACTAAGATCTGCAAGATGCTTGGTTTGACTG
CACTTGTTGAGGTTCATGACGAGAGGGAAATGGATCGTGTTCTTGGAATT
GAGGGGATTGAACTTATTGGTATTAACAATCGGAACCTTGAGACGTTTGA
GGTTGATATTAGTAACACAAAGAAACTTCTTGAAGGAGAGCGTGGTGAAA
TAATCCGTCAAAAGAAACATAATTGTGGTTGGGTGAATCTGGGGCTTATT
TACTCCCGATGATATCGCATACGTACAAGAAGCTGGGTGTTAAAGCTGTT
CTGGGTGGGGGAGTCCAATAGGGGAAACAAGACGACCCCCGGGAAGGGAA
ATAACGGGAATTTTTTGGAAAAAAAAAATTTCCTGGAATGACCCCCCTAT
TTTTTTGGGTTTCCCACAAAAGGGTCCGGGGGGAAAGGTATTTTCAAATA
GGAAAAAAAAAAAAAAAGCCCCCCTTTTTGGTTTCCAATAAAATATAAAT
TAAAGCCCCCCCCCCCCTTAATGGTGTTTTCTTATACGCCCCTTTTTTTC
CCCTTTTTTCCCTTTTTTGTATTTTTTTGGGATAACTTTTTCCCCCAAAA
GGGGAGAAAAGGGGAAAAAAAAATGTGGGTTTTTGTGGAATCCCTGAAAA
AAGGGAAATGAGGGGGGGTAATGTTGGGTTGGTGGTGGGGGGGAGATTAG
GAAGAAAAATAAATATAATTAAAAAAAAAAA
back to top