EY674885

Overview
NameEY674885
Unique NameEY674885
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length976
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY674885 vs. ExPASy Swiss-Prot
Match: MDLB_PSEPU ((S)-mandelate dehydrogenase OS=Pseudomonas putida GN=mdlB PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.948e-11
Identity = 33/83 (39.76%), Postives = 52/83 (62.65%), Query Frame = 1 
Query:  109 MAAEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALH 357
            M+    N+ ++++L +  LPKM YD+  GGAEDE+ +K N + F +  F+ + LVDVSR  L   +L  + S P++I PT L+
Sbjct:    1 MSQNLFNVEDYRKLRQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRRSLQAEVLGKRQSMPLLIGPTGLN 83
[Close]
BLAST of EY674885 vs. ExPASy Swiss-Prot
Match: HAOX2_MOUSE (Hydroxyacid oxidase 2 OS=Mus musculus GN=Hao2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.462e-11
Identity = 37/79 (46.84%), Postives = 49/79 (62.03%), Query Frame = 1 
Query:  130 LNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLA 366
            L +F+  A+  L K  +DF  G A+D  T  +N+ AF RI  R R L DVS+ID  TTI   +I+API I+PTA H +A
Sbjct:    6 LADFKAQAQKQLSKTSWDFIEGEADDGITYNDNLAAFRRIRLRPRYLRDVSKIDTRTTIQGQEINAPICISPTAFHSIA 84
The following BLAST results are available for this feature:
BLAST of EY674885 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
MDLB_PSEPU4.948e-1139.76(S)-mandelate dehydrogenase OS=Pseudomonas putida ... [more]
HAOX2_MOUSE6.462e-1146.84Hydroxyacid oxidase 2 OS=Mus musculus GN=Hao2 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-002-F11-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674885 ID=EY674885; Name=EY674885; organism=Citrus sinensis; type=EST; length=976bp
CTAATCCTTTATATGCCTCTTGACTTTGACTCTGCCCCCGACTCACTGTT
GTAATCTGCCTCACGATCGACCTTCATCAGTTGAAATTTTTAGTCATTCG
GGTTCCAAATGGCAGCTGAACCTGTTAATTTGAATGAGTTCCAAGAATTG
GCAAGGCTGGCCCTTCCAAAAATGTATTATGATTTCTACGCTGGTGGAGC
AGAAGATGAACATACCCTAAAAGAGAATGTGGAAGCCTTTCATAGAATTA
CGTTTCGGTCAAGAATTCTTGTCGATGTCAGCAGAATTGATTTATCGACT
ACCATACTTGATTACAAAATCTCGGCTCCCATTATCATTGCTCCAACGGC
TTTGCATAAGCTTGCAAACCCTGAAAGGAGAGGTAGCCACAGCCAGAGCA
GCAGCTTCATGTAACACCATAATGGTTTTTATTCCTTTCACATTCTAGCA
GCTCCATAGAGGAGGTTGCGGCCCAGCTCCCAATGGCGTTCGCTTCCTAT
CAATTATATGTAAGTTGGCTTGTCTGGGGCTCCTTCATTTTTCCTTTTTC
CCTTTTTTAATTTTTTTAATTTTCCCCCCTCCCTATTCTAATTAGAAAAA
CGGCACATTTTTTTGAACCAACAACAATTTTCCCTTTTTTATAATAATGG
TAAATTAAAGGGGTTTGAAAACAAACTATGGGCTCCCTTTTTTTGTGAAA
AGGTTATTCACAAAAAAAGAAAAATAAAACAACCTACTCCTATGTGCAAA
AAAAATAAAGAGGGAAGGGGTTTTTAAAGGGGGCTATTTGGTCCACATCA
GGCTATATAAACACCAAGAAACTTGTGGTCGAAAAGGGGGGGGGCGAAAA
AATATACAAAATAAAGAGAGTGGAATGAATTCTATTTCCTATTTTTTTAT
ATTGCTTTGGGGTGTTTCTCTAGTAAAATACATTCCCCACACGAGAAATA
CCACAACAACGCCAATCAATATTAAG
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